Wall clock time and date at job start Tue Mar 31 2020 15:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47056 * 2 1 4 4 H 1.09008 * 109.47101 * 304.99610 * 3 2 1 5 5 C 1.50703 * 109.47348 * 185.00028 * 3 2 1 6 6 H 1.08001 * 120.00392 * 239.99941 * 5 3 2 7 7 C 1.37883 * 119.99908 * 59.99228 * 5 3 2 8 8 N 1.31508 * 119.99870 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99783 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47049 * 60.00316 * 9 7 5 11 11 H 1.48503 * 109.46931 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47111 * 300.00385 * 9 7 5 13 13 O 1.45196 * 109.47656 * 64.99621 * 3 2 1 14 14 C 1.34762 * 117.00027 * 270.00518 * 13 3 2 15 15 O 1.21520 * 119.99951 * 359.97438 * 14 13 3 16 16 C 1.47265 * 119.99707 * 179.71965 * 14 13 3 17 17 C 1.41386 * 126.42475 * 0.30201 * 16 14 13 18 18 N 1.30451 * 108.05745 * 179.97438 * 17 16 14 19 19 N 1.39933 * 108.93890 * 359.97438 * 18 17 16 20 20 C 1.40153 * 125.75820 * 179.97438 * 19 18 17 21 21 C 1.38871 * 120.06427 * 127.85989 * 20 19 18 22 22 C 1.38091 * 119.93091 * 179.79107 * 21 20 19 23 23 C 1.38304 * 120.07071 * 0.46136 * 22 21 20 24 24 C 1.38262 * 120.13157 * 359.79111 * 23 22 21 25 25 C 1.38139 * 120.06950 * 359.97438 * 24 23 22 26 26 C 1.50702 * 120.03600 * 180.02562 * 25 24 23 27 27 C 1.34502 * 108.47478 * 359.73040 * 19 18 17 28 28 C 1.50705 * 126.30996 * 180.27077 * 27 19 18 29 29 H 1.08997 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47221 * 300.00467 * 1 2 3 31 31 H 1.09007 * 109.46837 * 60.00427 * 1 2 3 32 32 H 1.09001 * 109.47674 * 239.99912 * 2 1 3 33 33 H 1.09002 * 109.47539 * 119.99651 * 2 1 3 34 34 H 0.97004 * 119.99544 * 179.97438 * 8 7 5 35 35 H 1.08002 * 125.96947 * 359.95959 * 17 16 14 36 36 H 1.08000 * 120.03383 * 0.02562 * 21 20 19 37 37 H 1.08004 * 119.96964 * 180.23117 * 22 21 20 38 38 H 1.07993 * 119.93616 * 179.76965 * 23 22 21 39 39 H 1.08002 * 119.96609 * 179.97438 * 24 23 22 40 40 H 1.08996 * 109.46957 * 273.41069 * 26 25 24 41 41 H 1.08997 * 109.47009 * 33.41099 * 26 25 24 42 42 H 1.08996 * 109.47077 * 153.41005 * 26 25 24 43 43 H 1.08997 * 109.47035 * 273.78263 * 28 27 19 44 44 H 1.08997 * 109.46973 * 33.79120 * 28 27 19 45 45 H 1.09007 * 109.46728 * 153.78753 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1473 1.8890 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3373 -2.1732 9 14 6.0051 0.8801 -1.3811 10 1 6.5967 0.1454 -0.2342 11 1 6.3979 0.2166 -2.6503 12 1 6.5005 2.2800 -1.3808 13 8 1.6558 2.0918 1.2406 14 6 0.4680 2.7280 1.2558 15 8 -0.2276 2.7402 0.2594 16 6 0.0103 3.4037 2.4817 17 6 0.7059 3.4750 3.7106 18 7 -0.0242 4.1569 4.5495 19 7 -1.2046 4.5500 3.9089 20 6 -2.2394 5.2986 4.4860 21 6 -2.7064 6.4433 3.8535 22 6 -3.7291 7.1763 4.4224 23 6 -4.2817 6.7769 5.6257 24 6 -3.8153 5.6406 6.2605 25 6 -2.7958 4.9004 5.6940 26 6 -2.2884 3.6617 6.3862 27 6 -1.1758 4.0929 2.6443 28 6 -2.2429 4.2921 1.5988 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8294 -0.0606 -2.9501 35 1 1.6726 3.0407 3.9184 36 1 -2.2728 6.7577 2.9157 37 1 -4.0953 8.0646 3.9291 38 1 -5.0789 7.3539 6.0705 39 1 -4.2485 5.3314 7.2002 40 1 -1.5152 3.9372 7.1034 41 1 -3.1117 3.1745 6.9087 42 1 -1.8715 2.9775 5.6473 43 1 -2.9953 3.5093 1.6940 44 1 -2.7117 5.2660 1.7393 45 1 -1.7930 4.2451 0.6070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188108506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:24 Heat of formation + Delta-G solvation = -6.140180 kcal Electronic energy + Delta-G solvation = -27720.815241 eV Core-core repulsion = 23897.288690 eV Total energy + Delta-G solvation = -3823.526551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.96068 -40.99899 -40.08272 -37.49127 -35.47702 -34.82770 -34.09487 -33.33752 -32.85617 -30.56860 -29.41228 -28.58324 -27.81421 -25.50510 -24.58942 -23.71570 -23.10091 -22.01940 -21.23084 -20.66838 -19.12896 -18.62898 -17.77092 -17.33535 -17.19006 -16.79684 -16.70373 -16.29912 -15.94668 -15.28696 -15.06065 -14.89344 -14.74119 -14.64062 -14.38968 -14.14966 -13.88517 -13.82899 -13.46322 -13.33958 -13.31463 -13.25505 -13.08966 -12.97274 -12.77029 -12.53412 -12.41075 -12.26197 -12.12699 -11.97541 -11.71629 -11.40339 -11.16572 -11.01109 -10.77542 -10.49002 -10.06906 -9.84892 -9.47617 -8.24290 -6.40329 -0.23500 0.27004 0.45916 0.97695 1.11271 1.43126 1.46550 1.54474 2.13816 2.21576 2.45954 2.62435 3.05260 3.40136 3.57564 3.71513 3.78486 3.82830 4.06140 4.08308 4.30973 4.36739 4.41331 4.42409 4.43993 4.48558 4.51794 4.61231 4.62487 4.66944 4.78615 4.86704 4.89521 4.99406 5.11531 5.13364 5.21251 5.26558 5.31946 5.40139 5.44785 5.45205 5.55423 5.70107 5.71538 6.01690 6.04670 6.18162 6.33845 6.64727 7.09383 7.31863 8.82373 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024677 B = 0.002669 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.369160 B =10487.602362 C =10682.074736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.229 3.771 4 H 0.009 0.991 5 C -0.549 4.549 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.270 1.270 13 O -0.359 6.359 14 C 0.531 3.469 15 O -0.543 6.543 16 C -0.297 4.297 17 C 0.106 3.894 18 N -0.301 5.301 19 N -0.308 5.308 20 C 0.100 3.900 21 C -0.122 4.122 22 C -0.106 4.106 23 C -0.098 4.098 24 C -0.108 4.108 25 C -0.080 4.080 26 C -0.109 4.109 27 C 0.171 3.829 28 C -0.101 4.101 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.270 0.730 35 H 0.212 0.788 36 H 0.133 0.867 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.040 0.960 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.451 12.106 16.620 26.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.175 3.825 4 H 0.027 0.973 5 C -0.587 4.587 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.195 1.195 13 O -0.275 6.275 14 C 0.378 3.622 15 O -0.436 6.436 16 C -0.310 4.310 17 C -0.082 4.082 18 N -0.118 5.118 19 N -0.081 5.081 20 C 0.012 3.988 21 C -0.142 4.142 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.127 4.127 25 C -0.082 4.082 26 C -0.165 4.165 27 C 0.040 3.960 28 C -0.159 4.159 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.229 0.771 36 H 0.150 0.850 37 H 0.180 0.820 38 H 0.182 0.818 39 H 0.175 0.825 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.059 0.941 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.741 12.490 17.387 27.804 hybrid contribution 1.419 -0.716 -1.492 2.180 sum -16.322 11.774 15.895 25.646 Atomic orbital electron populations 1.21689 0.96283 1.00400 1.00121 1.21858 0.94481 0.98133 1.02192 1.20355 0.94383 0.89197 0.78534 0.97313 1.21305 0.90596 1.39886 1.06875 0.91716 1.25765 1.04054 0.93937 0.94385 1.70004 1.37393 1.37953 1.09811 0.85299 0.77937 0.78698 0.77870 1.18949 1.20178 1.19532 1.86498 1.35281 1.63207 1.42559 1.20215 0.79646 0.75543 0.86839 1.90702 1.56125 1.60419 1.36357 1.19257 0.99723 1.16490 0.95490 1.24517 0.99900 0.94468 0.89348 1.77322 0.93721 1.19729 1.21007 1.45600 1.14609 1.40413 1.07527 1.17710 0.90317 0.94036 0.96787 1.21333 0.99063 0.92571 1.01241 1.21400 0.94838 1.00111 0.96095 1.21734 0.99550 0.95870 0.94482 1.21326 0.95276 0.95057 1.00996 1.20106 0.96330 0.98083 0.93647 1.20730 1.01859 0.93958 0.99980 1.21859 0.95691 0.91563 0.86890 1.20886 0.94887 1.04584 0.95563 0.92215 0.94713 0.94251 0.89502 0.93816 0.92060 0.77121 0.84960 0.82049 0.81794 0.82488 0.90541 0.89187 0.94114 0.88368 0.87904 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.56 71.98 0.62 -5.14 16 2 C -0.13 -6.63 5.49 30.59 0.17 -6.46 16 3 C 0.23 12.73 2.25 29.85 0.07 12.80 16 4 H 0.01 0.56 7.16 -2.38 -0.02 0.55 16 5 C -0.55 -31.72 8.90 25.60 0.23 -31.49 16 6 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.03 5.29 84.66 0.45 1.47 16 8 N -0.91 -52.79 11.29 21.45 0.24 -52.55 16 9 Si 0.98 43.53 29.54 68.60 2.03 45.56 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 O -0.36 -18.05 9.65 -56.73 -0.55 -18.59 16 14 C 0.53 23.95 6.40 70.20 0.45 24.40 16 15 O -0.54 -25.96 11.96 19.77 0.24 -25.72 16 16 C -0.30 -11.00 6.13 -20.15 -0.12 -11.12 16 17 C 0.11 3.50 11.87 85.67 1.02 4.52 16 18 N -0.30 -9.43 10.95 -56.21 -0.62 -10.05 16 19 N -0.31 -8.79 2.94 -174.46 -0.51 -9.31 16 20 C 0.10 2.28 5.97 38.10 0.23 2.51 16 21 C -0.12 -2.13 8.42 22.39 0.19 -1.94 16 22 C -0.11 -1.17 10.04 22.25 0.22 -0.95 16 23 C -0.10 -0.90 10.04 22.29 0.22 -0.68 16 24 C -0.11 -1.32 9.71 22.25 0.22 -1.11 16 25 C -0.08 -1.53 5.90 -19.75 -0.12 -1.65 16 26 C -0.11 -2.11 9.19 71.24 0.65 -1.45 16 27 C 0.17 5.30 6.86 42.13 0.29 5.59 16 28 C -0.10 -2.56 9.58 71.24 0.68 -1.88 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.03 1.53 6.06 -2.39 -0.01 1.51 16 31 H 0.04 1.85 7.79 -2.38 -0.02 1.83 16 32 H 0.09 4.85 5.95 -2.39 -0.01 4.84 16 33 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.21 6.24 8.06 -2.91 -0.02 6.21 16 36 H 0.13 2.22 7.05 -2.91 -0.02 2.20 16 37 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 38 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 39 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 1.27 8.11 -2.39 -0.02 1.25 16 42 H 0.04 1.01 6.78 -2.39 -0.02 1.00 16 43 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.10 1.92 5.65 -2.39 -0.01 1.91 16 45 H 0.09 2.78 6.32 -2.38 -0.02 2.76 16 Total: -1.00 -71.36 370.04 7.30 -64.07 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 1.01 Total: 19.17 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.46 Total: -12.58 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -0.89 Total: -71.90 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.31 Total: -44.32 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -71.36 7.30 -64.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188108506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.926 kcal (2) G-P(sol) polarization free energy of solvation -71.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds