Wall clock time and date at job start Tue Mar 31 2020 16:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46695 * 2 1 4 4 N 1.46505 * 109.47101 * 184.84335 * 3 2 1 5 5 C 1.38143 * 125.60344 * 88.55079 * 4 3 2 6 6 C 1.47064 * 125.43271 * 359.97438 * 5 4 3 7 7 O 1.21640 * 119.99843 * 354.31251 * 6 5 4 8 8 N 1.34775 * 119.99672 * 174.31317 * 6 5 4 9 9 C 1.47586 * 134.48882 * 174.53204 * 8 6 5 10 10 C 1.53951 * 86.11440 * 155.35802 * 9 8 6 11 11 O 1.42896 * 113.73937 * 269.15508 * 10 9 8 12 12 C 1.50701 * 113.73778 * 137.95696 * 10 9 8 13 13 H 1.08004 * 119.99554 * 256.54513 * 12 10 9 14 14 C 1.37871 * 120.00227 * 76.81860 * 12 10 9 15 15 N 1.31516 * 120.00020 * 185.02726 * 14 12 10 16 16 Si 1.86796 * 120.00094 * 5.03172 * 14 12 10 17 17 H 1.48500 * 109.47343 * 87.59696 * 16 14 12 18 18 H 1.48501 * 109.47102 * 207.59881 * 16 14 12 19 19 H 1.48502 * 109.47271 * 327.59775 * 16 14 12 20 20 C 1.47809 * 134.46192 * 354.39906 * 8 6 5 21 21 C 1.35867 * 109.13872 * 180.24902 * 5 4 3 22 22 C 1.41591 * 107.72384 * 359.64246 * 21 5 4 23 23 C 1.40107 * 133.37846 * 180.09475 * 22 21 5 24 24 C 1.36437 * 119.83185 * 180.28348 * 23 22 21 25 25 C 1.38945 * 120.61338 * 0.02562 * 24 23 22 26 26 C 1.37671 * 120.64725 * 359.97438 * 25 24 23 27 27 C 1.37478 * 125.60321 * 268.57588 * 4 3 2 28 28 H 1.08998 * 109.47191 * 304.83778 * 1 2 3 29 29 H 1.09004 * 109.47219 * 64.84460 * 1 2 3 30 30 H 1.09003 * 109.46811 * 184.83911 * 1 2 3 31 31 H 1.08995 * 109.47315 * 240.00270 * 2 1 3 32 32 H 1.08995 * 109.46995 * 119.99686 * 2 1 3 33 33 H 1.08995 * 109.47531 * 64.84564 * 3 2 1 34 34 H 1.08999 * 109.47483 * 304.84137 * 3 2 1 35 35 H 1.08998 * 113.76445 * 41.05797 * 9 8 6 36 36 H 1.08998 * 113.87324 * 269.67236 * 9 8 6 37 37 H 0.96709 * 113.99822 * 162.56763 * 11 10 9 38 38 H 0.96999 * 120.00232 * 180.02562 * 15 14 12 39 39 H 1.09003 * 113.77021 * 90.38085 * 20 8 6 40 40 H 1.09003 * 113.83570 * 318.92228 * 20 8 6 41 41 H 1.08003 * 126.14115 * 179.76772 * 21 5 4 42 42 H 1.08004 * 120.08167 * 0.30352 * 23 22 21 43 43 H 1.07994 * 119.69375 * 180.02562 * 24 23 22 44 44 H 1.07994 * 119.67213 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.09137 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5003 1.4442 -0.1166 5 6 4.2126 1.4484 -1.3003 6 6 3.6255 1.4512 -2.6486 7 8 2.4217 1.3456 -2.7880 8 7 4.4212 1.5709 -3.7298 9 6 4.2008 1.5115 -5.1879 10 6 5.4690 2.3759 -5.3092 11 8 5.2098 3.7811 -5.3072 12 6 6.3892 1.9497 -6.4240 13 1 7.2912 1.3998 -6.1991 14 6 6.0825 2.2667 -7.7302 15 7 6.8315 1.8111 -8.7106 16 14 4.6034 3.3432 -8.1076 17 1 5.0066 4.7717 -8.0632 18 1 4.0858 3.0167 -9.4607 19 1 3.5417 3.0970 -7.0989 20 6 5.8648 1.8167 -3.9307 21 6 5.5421 1.4433 -1.0202 22 6 5.6858 1.4440 0.3884 23 6 6.7965 1.4420 1.2424 24 6 6.6133 1.4376 2.5944 25 6 5.3332 1.4346 3.1349 26 6 4.2260 1.4365 2.3167 27 6 4.3871 1.4415 0.9339 28 1 -0.3633 0.5870 0.8435 29 1 -0.3634 0.4368 -0.9302 30 1 -0.3633 -1.0240 0.0867 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7492 1.9307 0.9301 34 1 1.6075 1.9808 -0.8434 35 1 3.2920 2.0164 -5.5156 36 1 4.3080 0.5123 -5.6099 37 1 5.9868 4.3241 -5.1161 38 1 6.6160 2.0344 -9.6297 39 1 6.4626 0.9066 -3.9809 40 1 6.2823 2.5647 -3.2565 41 1 6.3452 1.4413 -1.7423 42 1 7.7953 1.4442 0.8314 43 1 7.4710 1.4365 3.2505 44 1 5.2058 1.4315 4.2072 45 1 3.2352 1.4345 2.7465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193981454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:36 Heat of formation + Delta-G solvation = 18.458625 kcal Electronic energy + Delta-G solvation = -28139.035260 eV Core-core repulsion = 24316.575393 eV Total energy + Delta-G solvation = -3822.459867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.68108 -39.68882 -37.86658 -36.79106 -35.06958 -34.27723 -32.52243 -32.07887 -29.97457 -29.89314 -28.30025 -26.28498 -25.69552 -25.43627 -23.28930 -22.20035 -21.44447 -20.84622 -19.80982 -18.81534 -17.78683 -17.05788 -16.65244 -16.52483 -15.57532 -15.46398 -15.10789 -15.01349 -14.74773 -14.38496 -14.31306 -13.99128 -13.65123 -13.52094 -13.26833 -13.04087 -12.88685 -12.73991 -12.28753 -12.23030 -12.16935 -11.92824 -11.79299 -11.70443 -11.33451 -11.07895 -10.97228 -10.88079 -10.79521 -10.63574 -10.11229 -9.81827 -9.78821 -9.17352 -8.84094 -8.76944 -8.30665 -8.04135 -7.70993 -6.30723 -4.45866 0.78504 1.57193 2.18419 2.49301 3.34077 3.36273 3.42925 3.53895 3.57929 3.85701 4.36618 4.51081 4.54848 4.61523 4.78929 4.90173 4.91951 4.98213 5.02368 5.09218 5.15949 5.32328 5.35040 5.43431 5.47633 5.52645 5.58601 5.65018 5.79750 5.83840 5.88948 5.97819 5.98203 6.01111 6.10442 6.14171 6.30999 6.35303 6.36388 6.53406 6.68227 6.69272 6.72945 7.05910 7.22390 7.30789 8.03552 8.09708 8.41775 8.59458 8.72499 9.30812 10.78173 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015518 B = 0.003576 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.927531 B = 7827.697059 C = 9189.504679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.108 3.892 4 N -0.449 5.449 5 C 0.040 3.960 6 C 0.593 3.407 7 O -0.555 6.555 8 N -0.620 5.620 9 C 0.119 3.881 10 C 0.201 3.799 11 O -0.559 6.559 12 C -0.552 4.552 13 H 0.085 0.915 14 C 0.087 3.913 15 N -0.882 5.882 16 Si 0.908 3.092 17 H -0.280 1.280 18 H -0.307 1.307 19 H -0.257 1.257 20 C 0.075 3.925 21 C -0.151 4.151 22 C -0.115 4.115 23 C -0.062 4.062 24 C -0.153 4.153 25 C -0.096 4.096 26 C -0.129 4.129 27 C 0.105 3.895 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.372 0.628 38 H 0.269 0.731 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.156 0.844 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.903 -1.235 20.909 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.012 4.012 4 N -0.129 5.129 5 C -0.069 4.069 6 C 0.382 3.618 7 O -0.436 6.436 8 N -0.353 5.353 9 C -0.002 4.002 10 C 0.160 3.840 11 O -0.366 6.366 12 C -0.589 4.589 13 H 0.103 0.897 14 C -0.119 4.119 15 N -0.517 5.517 16 Si 0.738 3.262 17 H -0.206 1.206 18 H -0.235 1.235 19 H -0.182 1.182 20 C -0.047 4.047 21 C -0.177 4.177 22 C -0.119 4.119 23 C -0.081 4.081 24 C -0.173 4.173 25 C -0.116 4.116 26 C -0.149 4.149 27 C -0.004 4.004 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.220 0.780 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.174 0.826 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.621 -1.524 20.628 21.435 hybrid contribution -0.095 0.648 -0.104 0.663 sum -5.717 -0.876 20.524 21.324 Atomic orbital electron populations 1.21656 0.94532 1.01986 1.02206 1.21808 0.96678 0.95866 1.02772 1.22014 0.76228 0.98886 1.04112 1.44063 1.05856 1.59865 1.03162 1.19986 0.91067 1.09141 0.86752 1.16743 0.85557 0.77384 0.82130 1.90738 1.13858 1.52633 1.86345 1.49932 1.10700 1.68380 1.06242 1.23929 1.00296 1.00622 0.75368 1.20536 0.92117 0.79675 0.91692 1.86293 1.39147 1.17944 1.93214 1.21081 1.09438 1.38780 0.89620 0.89684 1.24992 0.96638 0.94325 0.95947 1.69932 1.39004 1.42816 0.99944 0.86395 0.83065 0.80790 0.75961 1.20599 1.23528 1.18192 1.24294 0.81195 1.00845 0.98407 1.21270 0.94704 1.07110 0.94612 1.18215 0.92540 1.07806 0.93365 1.20406 0.97247 0.97682 0.92726 1.20580 0.97001 1.04792 0.94883 1.20800 0.91927 0.99841 0.99036 1.20003 0.99271 1.06377 0.89292 1.18373 0.88935 1.03705 0.89386 0.92785 0.91926 0.92296 0.90870 0.92067 0.90088 0.87573 0.90448 0.88188 0.78045 0.92155 0.88692 0.90455 0.82625 0.85822 0.86119 0.85902 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.13 -1.59 6.26 -26.73 -0.17 -1.76 16 3 C 0.11 1.40 5.38 -4.04 -0.02 1.38 16 4 N -0.45 -6.72 2.82 -110.36 -0.31 -7.03 16 5 C 0.04 0.68 6.80 -82.29 -0.56 0.12 16 6 C 0.59 11.37 8.01 -12.68 -0.10 11.27 16 7 O -0.55 -11.66 15.35 5.24 0.08 -11.58 16 8 N -0.62 -11.87 3.61 -179.51 -0.65 -12.52 16 9 C 0.12 2.49 7.23 -2.96 -0.02 2.46 16 10 C 0.20 4.19 0.92 -90.84 -0.08 4.11 16 11 O -0.56 -11.57 10.56 -35.23 -0.37 -11.94 16 12 C -0.55 -13.60 9.18 -34.44 -0.32 -13.92 16 13 H 0.09 2.23 8.06 -52.48 -0.42 1.81 16 14 C 0.09 2.31 5.47 -17.82 -0.10 2.21 16 15 N -0.88 -24.90 13.96 55.43 0.77 -24.13 16 16 Si 0.91 21.70 25.65 -169.99 -4.36 17.34 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.31 -7.44 7.11 56.52 0.40 -7.03 16 19 H -0.26 -6.09 5.14 56.52 0.29 -5.80 16 20 C 0.08 1.30 6.02 -2.84 -0.02 1.28 16 21 C -0.15 -2.27 9.82 -39.15 -0.38 -2.66 16 22 C -0.11 -1.62 6.16 -106.93 -0.66 -2.28 16 23 C -0.06 -0.72 10.06 -39.53 -0.40 -1.12 16 24 C -0.15 -1.54 9.97 -39.97 -0.40 -1.94 16 25 C -0.10 -0.95 10.01 -39.53 -0.40 -1.35 16 26 C -0.13 -1.46 9.96 -39.42 -0.39 -1.85 16 27 C 0.11 1.47 6.81 -83.98 -0.57 0.90 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.11 1.58 6.47 -51.93 -0.34 1.24 16 35 H 0.08 1.72 6.76 -51.93 -0.35 1.37 16 36 H 0.10 2.02 8.09 -51.93 -0.42 1.60 16 37 H 0.37 6.28 9.12 45.56 0.42 6.70 16 38 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.10 1.55 8.09 -51.93 -0.42 1.13 16 40 H 0.08 1.18 7.02 -51.93 -0.36 0.81 16 41 H 0.16 2.13 5.38 -52.48 -0.28 1.85 16 42 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.12 1.09 8.05 -52.49 -0.42 0.67 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -31.08 367.55 -9.17 -40.25 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.65 Total: 8.28 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -4.22 Total: -4.20 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.19 Total: -43.68 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.29 Total: -23.52 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.36 Total: 17.34 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.08 -9.17 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193981454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.706 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds