Wall clock time and date at job start Tue Mar 31 2020 16:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46695 * 2 1 4 4 N 1.46505 * 109.47101 * 184.84335 * 3 2 1 5 5 C 1.38143 * 125.60344 * 88.55079 * 4 3 2 6 6 C 1.47064 * 125.43271 * 359.97438 * 5 4 3 7 7 O 1.21640 * 119.99843 * 354.31251 * 6 5 4 8 8 N 1.34775 * 119.99672 * 174.31317 * 6 5 4 9 9 C 1.47586 * 134.48882 * 174.53204 * 8 6 5 10 10 C 1.53951 * 86.11440 * 155.35802 * 9 8 6 11 11 O 1.42896 * 113.73937 * 269.15508 * 10 9 8 12 12 C 1.50701 * 113.73778 * 137.95696 * 10 9 8 13 13 H 1.08004 * 119.99554 * 256.54513 * 12 10 9 14 14 C 1.37871 * 120.00227 * 76.81860 * 12 10 9 15 15 N 1.31516 * 120.00020 * 185.02726 * 14 12 10 16 16 Si 1.86796 * 120.00094 * 5.03172 * 14 12 10 17 17 H 1.48500 * 109.47343 * 87.59696 * 16 14 12 18 18 H 1.48501 * 109.47102 * 207.59881 * 16 14 12 19 19 H 1.48502 * 109.47271 * 327.59775 * 16 14 12 20 20 C 1.47809 * 134.46192 * 354.39906 * 8 6 5 21 21 C 1.35867 * 109.13872 * 180.24902 * 5 4 3 22 22 C 1.41591 * 107.72384 * 359.64246 * 21 5 4 23 23 C 1.40107 * 133.37846 * 180.09475 * 22 21 5 24 24 C 1.36437 * 119.83185 * 180.28348 * 23 22 21 25 25 C 1.38945 * 120.61338 * 0.02562 * 24 23 22 26 26 C 1.37671 * 120.64725 * 359.97438 * 25 24 23 27 27 C 1.37478 * 125.60321 * 268.57588 * 4 3 2 28 28 H 1.08998 * 109.47191 * 304.83778 * 1 2 3 29 29 H 1.09004 * 109.47219 * 64.84460 * 1 2 3 30 30 H 1.09003 * 109.46811 * 184.83911 * 1 2 3 31 31 H 1.08995 * 109.47315 * 240.00270 * 2 1 3 32 32 H 1.08995 * 109.46995 * 119.99686 * 2 1 3 33 33 H 1.08995 * 109.47531 * 64.84564 * 3 2 1 34 34 H 1.08999 * 109.47483 * 304.84137 * 3 2 1 35 35 H 1.08998 * 113.76445 * 41.05797 * 9 8 6 36 36 H 1.08998 * 113.87324 * 269.67236 * 9 8 6 37 37 H 0.96709 * 113.99822 * 162.56763 * 11 10 9 38 38 H 0.96999 * 120.00232 * 180.02562 * 15 14 12 39 39 H 1.09003 * 113.77021 * 90.38085 * 20 8 6 40 40 H 1.09003 * 113.83570 * 318.92228 * 20 8 6 41 41 H 1.08003 * 126.14115 * 179.76772 * 21 5 4 42 42 H 1.08004 * 120.08167 * 0.30352 * 23 22 21 43 43 H 1.07994 * 119.69375 * 180.02562 * 24 23 22 44 44 H 1.07994 * 119.67213 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.09137 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5003 1.4442 -0.1166 5 6 4.2126 1.4484 -1.3003 6 6 3.6255 1.4512 -2.6486 7 8 2.4217 1.3456 -2.7880 8 7 4.4212 1.5709 -3.7298 9 6 4.2008 1.5115 -5.1879 10 6 5.4690 2.3759 -5.3092 11 8 5.2098 3.7811 -5.3072 12 6 6.3892 1.9497 -6.4240 13 1 7.2912 1.3998 -6.1991 14 6 6.0825 2.2667 -7.7302 15 7 6.8315 1.8111 -8.7106 16 14 4.6034 3.3432 -8.1076 17 1 5.0066 4.7717 -8.0632 18 1 4.0858 3.0167 -9.4607 19 1 3.5417 3.0970 -7.0989 20 6 5.8648 1.8167 -3.9307 21 6 5.5421 1.4433 -1.0202 22 6 5.6858 1.4440 0.3884 23 6 6.7965 1.4420 1.2424 24 6 6.6133 1.4376 2.5944 25 6 5.3332 1.4346 3.1349 26 6 4.2260 1.4365 2.3167 27 6 4.3871 1.4415 0.9339 28 1 -0.3633 0.5870 0.8435 29 1 -0.3634 0.4368 -0.9302 30 1 -0.3633 -1.0240 0.0867 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7492 1.9307 0.9301 34 1 1.6075 1.9808 -0.8434 35 1 3.2920 2.0164 -5.5156 36 1 4.3080 0.5123 -5.6099 37 1 5.9868 4.3241 -5.1161 38 1 6.6160 2.0344 -9.6297 39 1 6.4626 0.9066 -3.9809 40 1 6.2823 2.5647 -3.2565 41 1 6.3452 1.4413 -1.7423 42 1 7.7953 1.4442 0.8314 43 1 7.4710 1.4365 3.2505 44 1 5.2058 1.4315 4.2072 45 1 3.2352 1.4345 2.7465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193981454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:35 Heat of formation + Delta-G solvation = -1.446811 kcal Electronic energy + Delta-G solvation = -28139.898425 eV Core-core repulsion = 24316.575393 eV Total energy + Delta-G solvation = -3823.323031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.73790 -41.18960 -39.25071 -37.85696 -36.20837 -35.73319 -34.52514 -33.03338 -31.32430 -30.77511 -29.65558 -27.51615 -27.29895 -26.78867 -24.47768 -23.13908 -22.39654 -22.03939 -21.23411 -20.24095 -19.57486 -18.15143 -17.90589 -17.76729 -17.00617 -16.75771 -16.67386 -16.11678 -16.02666 -15.76520 -15.39862 -15.10935 -15.02170 -14.82056 -14.58484 -14.30361 -14.17227 -13.95293 -13.82498 -13.69670 -13.15528 -13.10536 -13.02386 -12.65853 -12.60019 -12.59451 -12.51842 -12.01054 -11.94102 -11.84777 -11.76490 -11.32104 -11.02680 -10.78418 -10.75463 -10.48818 -9.74170 -9.16262 -8.68490 -8.36835 -6.51190 -0.23435 0.69713 1.08090 1.31556 1.42931 1.46885 1.63371 2.04685 2.21654 2.38128 2.96134 2.97623 3.16879 3.43710 3.61003 3.67880 3.81772 3.86359 4.07294 4.18007 4.21005 4.26280 4.35923 4.39766 4.43832 4.50845 4.56033 4.57326 4.64405 4.67795 4.71198 4.75307 4.88634 4.89887 4.98148 5.05193 5.08369 5.13369 5.24669 5.45020 5.54010 5.67787 5.71140 5.75794 6.06342 6.08503 6.28486 6.57503 6.64747 6.94667 7.08759 7.30362 8.75664 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015518 B = 0.003576 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.927531 B = 7827.697059 C = 9189.504679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.108 3.892 4 N -0.455 5.455 5 C 0.004 3.996 6 C 0.589 3.411 7 O -0.584 6.584 8 N -0.623 5.623 9 C 0.113 3.887 10 C 0.197 3.803 11 O -0.567 6.567 12 C -0.538 4.538 13 H 0.066 0.934 14 C 0.045 3.955 15 N -0.926 5.926 16 Si 0.956 3.044 17 H -0.278 1.278 18 H -0.313 1.313 19 H -0.257 1.257 20 C 0.092 3.908 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.070 4.070 24 C -0.150 4.150 25 C -0.083 4.083 26 C -0.142 4.142 27 C 0.094 3.906 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.389 0.611 38 H 0.269 0.731 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.165 0.835 42 H 0.141 0.859 43 H 0.152 0.848 44 H 0.158 0.842 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.433 -0.809 24.974 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.013 4.013 4 N -0.136 5.136 5 C -0.105 4.105 6 C 0.381 3.619 7 O -0.467 6.467 8 N -0.355 5.355 9 C -0.009 4.009 10 C 0.156 3.844 11 O -0.376 6.376 12 C -0.576 4.576 13 H 0.084 0.916 14 C -0.156 4.156 15 N -0.564 5.564 16 Si 0.786 3.214 17 H -0.204 1.204 18 H -0.242 1.242 19 H -0.182 1.182 20 C -0.029 4.029 21 C -0.167 4.167 22 C -0.146 4.146 23 C -0.089 4.089 24 C -0.169 4.169 25 C -0.103 4.103 26 C -0.162 4.162 27 C -0.015 4.015 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.239 0.761 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.182 0.818 42 H 0.158 0.842 43 H 0.169 0.831 44 H 0.175 0.825 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.138 -1.083 24.719 25.270 hybrid contribution -0.149 0.498 -1.162 1.273 sum -5.286 -0.586 23.557 24.150 Atomic orbital electron populations 1.21632 0.92962 1.02973 1.02301 1.21729 0.97969 0.95076 1.01537 1.22072 0.75619 0.99285 1.04302 1.44151 1.06412 1.60083 1.02914 1.19662 0.91915 1.12846 0.86097 1.17129 0.85210 0.76514 0.83071 1.90710 1.15118 1.53918 1.86926 1.49843 1.11386 1.68804 1.05490 1.23798 0.99433 1.00534 0.77099 1.20386 0.91584 0.79923 0.92525 1.86244 1.40355 1.17739 1.93306 1.21300 1.08862 1.37020 0.90404 0.91635 1.25564 0.98349 0.95476 0.96257 1.70023 1.40934 1.45090 1.00337 0.85628 0.80968 0.79555 0.75266 1.20395 1.24241 1.18168 1.24222 0.80574 1.01744 0.96392 1.21442 0.94128 1.05404 0.95710 1.18466 0.93703 1.09372 0.93060 1.20708 0.97340 0.97492 0.93351 1.21022 0.98328 1.02919 0.94623 1.21298 0.91288 0.96996 1.00693 1.20352 1.01033 1.06656 0.88187 1.18798 0.88709 1.03750 0.90248 0.90470 0.93621 0.91245 0.94389 0.90808 0.87255 0.90204 0.92198 0.88159 0.76109 0.92213 0.87536 0.87748 0.81800 0.84160 0.83067 0.82456 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.91 71.98 0.71 -1.96 16 2 C -0.12 -2.96 6.26 30.59 0.19 -2.77 16 3 C 0.11 2.75 5.38 86.38 0.46 3.22 16 4 N -0.45 -13.40 2.82 -503.07 -1.42 -14.81 16 5 C 0.00 0.14 6.80 39.91 0.27 0.41 16 6 C 0.59 23.15 8.01 86.56 0.69 23.84 16 7 O -0.58 -25.63 15.35 -4.16 -0.06 -25.69 16 8 N -0.62 -23.99 3.61 -843.90 -3.05 -27.03 16 9 C 0.11 4.82 7.23 86.49 0.63 5.44 16 10 C 0.20 8.16 0.92 -10.88 -0.01 8.15 16 11 O -0.57 -22.92 10.56 -148.98 -1.57 -24.49 16 12 C -0.54 -26.66 9.18 25.60 0.24 -26.43 16 13 H 0.07 3.47 8.06 -2.91 -0.02 3.45 16 14 C 0.05 2.43 5.47 84.65 0.46 2.89 16 15 N -0.93 -53.39 13.96 21.45 0.30 -53.09 16 16 Si 0.96 45.38 25.65 68.60 1.76 47.14 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 18 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 19 H -0.26 -12.10 5.14 99.48 0.51 -11.59 16 20 C 0.09 3.10 6.02 86.44 0.52 3.62 16 21 C -0.14 -4.08 9.82 22.55 0.22 -3.86 16 22 C -0.14 -3.73 6.16 -21.36 -0.13 -3.86 16 23 C -0.07 -1.41 10.06 22.30 0.22 -1.18 16 24 C -0.15 -2.34 9.97 22.02 0.22 -2.12 16 25 C -0.08 -1.25 10.01 22.31 0.22 -1.03 16 26 C -0.14 -2.73 9.96 22.37 0.22 -2.50 16 27 C 0.09 2.45 6.81 39.14 0.27 2.72 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 1.16 8.10 -2.39 -0.02 1.14 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.11 2.08 8.09 -2.39 -0.02 2.06 16 34 H 0.08 2.46 6.47 -2.39 -0.02 2.45 16 35 H 0.06 2.73 6.76 -2.39 -0.02 2.71 16 36 H 0.10 4.17 8.09 -2.39 -0.02 4.15 16 37 H 0.39 12.51 9.12 -74.05 -0.68 11.84 16 38 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.11 3.35 8.09 -2.39 -0.02 3.33 16 40 H 0.10 2.95 7.02 -2.39 -0.02 2.94 16 41 H 0.16 4.25 5.38 -2.91 -0.02 4.23 16 42 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 43 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 44 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 45 H 0.14 2.01 8.05 -2.91 -0.02 1.99 16 Total: -1.00 -69.30 367.55 1.51 -67.79 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.14 Total: 25.62 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 5.41 Total: 4.58 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -4.17 Total: -94.94 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -1.64 Total: -50.19 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.76 Total: 47.14 kcal Total: -69.30 1.51 -67.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193981454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.344 kcal (2) G-P(sol) polarization free energy of solvation -69.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds