Wall clock time and date at job start Tue Mar 31 2020 15:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47349 * 2 1 4 4 H 1.09001 * 109.46802 * 54.99750 * 3 2 1 5 5 C 1.52997 * 109.46902 * 174.99608 * 3 2 1 6 6 O 1.42895 * 109.46672 * 294.99566 * 3 2 1 7 7 C 1.35702 * 116.99707 * 155.06390 * 6 3 2 8 8 C 1.38585 * 120.15784 * 5.60184 * 7 6 3 9 9 C 1.38151 * 120.11169 * 180.02562 * 8 7 6 10 10 C 1.38575 * 120.43704 * 359.97438 * 9 8 7 11 11 C 1.37748 * 120.32478 * 359.78629 * 10 9 8 12 12 C 1.39961 * 119.87612 * 0.46498 * 11 10 9 13 13 C 1.46889 * 120.21223 * 179.79409 * 12 11 10 14 14 C 1.35154 * 120.00358 * 49.20115 * 13 12 11 15 15 C 1.41785 * 119.99810 * 10.22817 * 14 13 12 16 16 O 1.21780 * 120.00093 * 6.86414 * 15 14 13 17 17 N 1.34778 * 119.99784 * 186.58549 * 15 14 13 18 18 C 1.36742 * 120.00014 * 180.27553 * 17 15 14 19 19 H 1.08003 * 120.00305 * 28.14089 * 18 17 15 20 20 C 1.39096 * 120.00500 * 208.14153 * 18 17 15 21 21 N 1.31345 * 119.99513 * 354.51739 * 20 18 17 22 22 Si 1.86802 * 120.00627 * 174.51866 * 20 18 17 23 23 H 1.48501 * 109.46782 * 59.99721 * 22 20 18 24 24 H 1.48497 * 109.47170 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47026 * 300.00228 * 22 20 18 26 26 C 1.46503 * 119.99867 * 0.28473 * 17 15 14 27 27 C 1.47196 * 109.47198 * 83.92772 * 26 17 15 28 28 N 9.93046 * 79.35844 * 308.55313 * 2 1 3 29 29 H 1.08999 * 109.46719 * 59.99961 * 1 2 3 30 30 H 1.08999 * 109.47486 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47181 * 300.00515 * 1 2 3 32 32 H 1.08999 * 109.47181 * 239.99485 * 2 1 3 33 33 H 1.08999 * 109.46719 * 120.00039 * 2 1 3 34 34 H 1.08999 * 109.47013 * 179.97438 * 5 3 2 35 35 H 1.08995 * 109.47203 * 300.00211 * 5 3 2 36 36 H 1.09011 * 109.47165 * 59.99858 * 5 3 2 37 37 H 1.07999 * 119.94986 * 0.04835 * 8 7 6 38 38 H 1.07996 * 119.78195 * 179.97438 * 9 8 7 39 39 H 1.08000 * 119.83752 * 180.02562 * 10 9 8 40 40 H 1.08002 * 120.05976 * 180.23620 * 11 10 9 41 41 H 1.08006 * 119.99506 * 229.20129 * 13 12 11 42 42 H 1.08000 * 119.99942 * 190.23410 * 14 13 12 43 43 H 0.97001 * 119.99694 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.46724 * 203.92625 * 26 17 15 45 45 H 1.08995 * 109.47124 * 323.92222 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4442 0.1258 6 8 1.6621 2.0812 -1.2211 7 6 1.5538 3.4338 -1.2009 8 6 1.9164 4.1445 -0.0677 9 6 1.8052 5.5213 -0.0481 10 6 1.3320 6.2034 -1.1577 11 6 0.9712 5.5154 -2.2952 12 6 1.0734 4.1199 -2.3279 13 6 0.6864 3.3786 -3.5355 14 6 1.1546 3.7629 -4.7437 15 6 2.1821 4.7363 -4.8288 16 8 2.7294 5.1341 -3.8163 17 7 2.5570 5.2170 -6.0308 18 6 3.5518 6.1516 -6.1134 19 1 4.3257 6.1845 -5.3608 20 6 3.5671 7.0599 -7.1667 21 7 2.6902 6.9531 -8.1388 22 14 4.8345 8.4318 -7.1989 23 1 6.1987 7.8450 -7.2113 24 1 4.6392 9.2577 -8.4174 25 1 4.6730 9.2833 -5.9931 26 6 1.8985 4.7384 -7.2489 27 6 0.6559 5.4972 -7.4654 28 7 -0.3038 6.0826 -7.6324 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9283 2.4718 0.1254 35 1 3.8532 0.9569 1.0572 36 1 3.9996 0.9050 -0.7160 37 1 2.2868 3.6212 0.8013 38 1 2.0888 6.0698 0.8380 39 1 1.2494 7.2799 -1.1318 40 1 0.6065 6.0516 -3.1589 41 1 0.0276 2.5262 -3.4579 42 1 0.7461 3.3288 -5.6442 43 1 2.7006 7.5867 -8.8731 44 1 2.5636 4.8796 -8.1009 45 1 1.6637 3.6794 -7.1429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255290616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:43 Heat of formation + Delta-G solvation = 18.465468 kcal Electronic energy + Delta-G solvation = -28098.892412 eV Core-core repulsion = 24276.432842 eV Total energy + Delta-G solvation = -3822.459570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.13625 -39.03239 -37.39815 -35.77731 -34.41807 -34.16293 -33.00361 -31.87091 -30.18640 -29.63460 -28.85429 -27.41837 -25.27351 -24.07373 -23.30895 -22.36323 -21.09512 -20.36375 -18.45621 -17.91154 -17.69298 -16.82639 -16.27696 -15.71043 -15.18860 -15.09434 -14.75378 -14.55612 -14.06132 -14.00844 -13.68497 -13.43329 -13.35834 -13.04345 -12.97400 -12.91437 -12.71777 -12.16505 -12.03282 -11.91181 -11.79395 -11.65441 -11.51602 -11.28930 -11.22506 -11.17913 -11.01067 -10.88828 -10.57052 -10.52204 -10.44334 -10.42821 -10.29205 -9.29686 -9.18086 -8.60655 -8.05401 -7.76420 -7.36984 -6.49220 -4.05353 1.34936 1.99244 2.36166 3.16172 3.21209 3.24373 3.38498 3.72501 3.98625 4.13664 4.29897 4.38085 4.57244 4.79717 4.90834 4.94602 4.99505 5.10619 5.18465 5.25187 5.32056 5.36869 5.44939 5.48320 5.51792 5.68534 5.73374 5.75287 5.79384 5.87197 5.94922 5.99070 6.08591 6.14997 6.21662 6.24490 6.45669 6.59504 6.65265 6.75531 6.89157 6.96867 7.14028 7.27520 7.41293 7.80943 8.01849 8.34339 8.78407 9.03938 9.18994 9.82647 10.53159 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.003531 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.617175 B = 7928.843157 C = 8514.684865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.082 3.918 4 H 0.070 0.930 5 C -0.181 4.181 6 O -0.304 6.304 7 C 0.138 3.862 8 C -0.224 4.224 9 C -0.082 4.082 10 C -0.165 4.165 11 C 0.000 4.000 12 C -0.069 4.069 13 C -0.045 4.045 14 C -0.193 4.193 15 C 0.477 3.523 16 O -0.561 6.561 17 N -0.437 5.437 18 C -0.297 4.297 19 H 0.104 0.896 20 C 0.033 3.967 21 N -0.885 5.885 22 Si 0.932 3.068 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.216 3.784 27 C 0.252 3.748 28 N -0.483 5.483 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.275 0.725 44 H 0.139 0.861 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 -11.897 12.656 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.025 3.975 4 H 0.088 0.912 5 C -0.238 4.238 6 O -0.218 6.218 7 C 0.093 3.907 8 C -0.243 4.243 9 C -0.100 4.100 10 C -0.183 4.183 11 C -0.018 4.018 12 C -0.070 4.070 13 C -0.067 4.067 14 C -0.214 4.214 15 C 0.270 3.730 16 O -0.445 6.445 17 N -0.156 5.156 18 C -0.425 4.425 19 H 0.122 0.878 20 C -0.170 4.170 21 N -0.525 5.525 22 Si 0.759 3.241 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.198 1.198 26 C 0.089 3.911 27 C -0.066 4.066 28 N -0.163 5.163 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.086 0.914 44 H 0.156 0.844 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.896 -10.847 12.525 16.820 hybrid contribution 1.175 0.718 -0.174 1.388 sum -1.721 -10.128 12.351 16.065 Atomic orbital electron populations 1.21755 0.95225 1.01603 1.02464 1.21617 0.96750 0.94231 1.02949 1.22413 0.94904 0.93665 0.86504 0.91190 1.22376 0.95534 1.03414 1.02487 1.86041 1.83837 1.17132 1.34808 1.18931 0.96230 0.81803 0.93706 1.20934 1.09848 0.95251 0.98223 1.20804 0.97847 0.93410 0.97971 1.20790 1.04111 0.99494 0.93934 1.20910 0.93226 0.91659 0.96026 1.18093 1.04151 0.92745 0.92036 1.21906 0.97295 0.96399 0.91050 1.22345 0.99877 1.01401 0.97809 1.17022 0.86181 0.86010 0.83814 1.90758 1.57622 1.62778 1.33328 1.43595 1.31823 1.37054 1.03137 1.19635 1.04212 1.07832 1.10841 0.87802 1.25438 0.97904 0.98039 0.95579 1.69645 1.35376 1.37001 1.10465 0.85891 0.80021 0.80481 0.77756 1.19684 1.20939 1.19779 1.18930 0.87022 0.92251 0.92886 1.29397 0.92666 0.92609 0.91896 1.80912 1.15400 1.10320 1.09699 0.91752 0.92666 0.92976 0.90771 0.90447 0.91542 0.91514 0.91428 0.86226 0.86851 0.86682 0.86334 0.85884 0.86225 0.91444 0.84353 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.81 37.16 0.36 -0.98 16 2 C -0.12 -1.05 5.64 -26.73 -0.15 -1.20 16 3 C 0.08 0.91 2.22 -26.73 -0.06 0.85 16 4 H 0.07 0.73 6.32 -51.93 -0.33 0.40 16 5 C -0.18 -1.91 9.17 37.16 0.34 -1.57 16 6 O -0.30 -4.55 8.79 -18.81 -0.17 -4.71 16 7 C 0.14 2.33 6.62 -38.63 -0.26 2.07 16 8 C -0.22 -3.41 8.23 -39.49 -0.33 -3.73 16 9 C -0.08 -1.26 10.03 -39.49 -0.40 -1.66 16 10 C -0.16 -2.86 10.02 -39.64 -0.40 -3.26 16 11 C 0.00 0.00 6.79 -39.12 -0.27 -0.26 16 12 C -0.07 -1.29 4.29 -104.93 -0.45 -1.74 16 13 C -0.05 -0.79 9.33 -37.18 -0.35 -1.13 16 14 C -0.19 -3.62 8.87 -39.32 -0.35 -3.96 16 15 C 0.48 10.88 6.61 -14.90 -0.10 10.78 16 16 O -0.56 -14.20 12.03 5.12 0.06 -14.14 16 17 N -0.44 -10.21 2.59 -121.14 -0.31 -10.52 16 18 C -0.30 -7.59 9.18 -15.04 -0.14 -7.72 16 19 H 0.10 2.78 7.49 -52.48 -0.39 2.38 16 20 C 0.03 0.82 5.36 -17.44 -0.09 0.73 16 21 N -0.89 -21.96 8.78 55.50 0.49 -21.48 16 22 Si 0.93 20.06 29.56 -169.99 -5.02 15.04 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 26 C 0.22 4.35 4.79 -6.83 -0.03 4.32 16 27 C 0.25 5.61 13.36 -20.75 -0.28 5.33 16 28 N -0.48 -11.52 18.54 42.17 0.78 -10.74 16 29 H 0.06 0.66 7.82 -51.93 -0.41 0.26 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.80 6.90 -51.93 -0.36 0.44 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.12 1.50 5.42 -52.49 -0.28 1.22 16 38 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 40 H 0.12 2.46 7.51 -52.49 -0.39 2.07 16 41 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 42 H 0.12 1.91 6.12 -52.49 -0.32 1.58 16 43 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 44 H 0.14 2.88 6.36 -51.93 -0.33 2.55 16 45 H 0.08 1.24 6.34 -51.93 -0.33 0.91 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -30.40 373.56 -7.56 -37.96 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.09 Total: 6.11 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.93 Total: -3.15 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.96 Total: -42.73 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.10 Total: -18.85 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.40 -7.56 -37.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255290616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.429 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds