Wall clock time and date at job start Tue Mar 31 2020 15:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47349 * 2 1 4 4 H 1.09001 * 109.46802 * 54.99750 * 3 2 1 5 5 C 1.52997 * 109.46902 * 174.99608 * 3 2 1 6 6 O 1.42895 * 109.46672 * 294.99566 * 3 2 1 7 7 C 1.35702 * 116.99707 * 155.06390 * 6 3 2 8 8 C 1.38585 * 120.15784 * 5.60184 * 7 6 3 9 9 C 1.38151 * 120.11169 * 180.02562 * 8 7 6 10 10 C 1.38575 * 120.43704 * 359.97438 * 9 8 7 11 11 C 1.37748 * 120.32478 * 359.78629 * 10 9 8 12 12 C 1.39961 * 119.87612 * 0.46498 * 11 10 9 13 13 C 1.46889 * 120.21223 * 179.79409 * 12 11 10 14 14 C 1.35154 * 120.00358 * 49.20115 * 13 12 11 15 15 C 1.41785 * 119.99810 * 10.22817 * 14 13 12 16 16 O 1.21780 * 120.00093 * 6.86414 * 15 14 13 17 17 N 1.34778 * 119.99784 * 186.58549 * 15 14 13 18 18 C 1.36742 * 120.00014 * 180.27553 * 17 15 14 19 19 H 1.08003 * 120.00305 * 28.14089 * 18 17 15 20 20 C 1.39096 * 120.00500 * 208.14153 * 18 17 15 21 21 N 1.31345 * 119.99513 * 354.51739 * 20 18 17 22 22 Si 1.86802 * 120.00627 * 174.51866 * 20 18 17 23 23 H 1.48501 * 109.46782 * 59.99721 * 22 20 18 24 24 H 1.48497 * 109.47170 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47026 * 300.00228 * 22 20 18 26 26 C 1.46503 * 119.99867 * 0.28473 * 17 15 14 27 27 C 1.47196 * 109.47198 * 83.92772 * 26 17 15 28 28 N 9.93046 * 79.35844 * 308.55313 * 2 1 3 29 29 H 1.08999 * 109.46719 * 59.99961 * 1 2 3 30 30 H 1.08999 * 109.47486 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47181 * 300.00515 * 1 2 3 32 32 H 1.08999 * 109.47181 * 239.99485 * 2 1 3 33 33 H 1.08999 * 109.46719 * 120.00039 * 2 1 3 34 34 H 1.08999 * 109.47013 * 179.97438 * 5 3 2 35 35 H 1.08995 * 109.47203 * 300.00211 * 5 3 2 36 36 H 1.09011 * 109.47165 * 59.99858 * 5 3 2 37 37 H 1.07999 * 119.94986 * 0.04835 * 8 7 6 38 38 H 1.07996 * 119.78195 * 179.97438 * 9 8 7 39 39 H 1.08000 * 119.83752 * 180.02562 * 10 9 8 40 40 H 1.08002 * 120.05976 * 180.23620 * 11 10 9 41 41 H 1.08006 * 119.99506 * 229.20129 * 13 12 11 42 42 H 1.08000 * 119.99942 * 190.23410 * 14 13 12 43 43 H 0.97001 * 119.99694 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.46724 * 203.92625 * 26 17 15 45 45 H 1.08995 * 109.47124 * 323.92222 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4442 0.1258 6 8 1.6621 2.0812 -1.2211 7 6 1.5538 3.4338 -1.2009 8 6 1.9164 4.1445 -0.0677 9 6 1.8052 5.5213 -0.0481 10 6 1.3320 6.2034 -1.1577 11 6 0.9712 5.5154 -2.2952 12 6 1.0734 4.1199 -2.3279 13 6 0.6864 3.3786 -3.5355 14 6 1.1546 3.7629 -4.7437 15 6 2.1821 4.7363 -4.8288 16 8 2.7294 5.1341 -3.8163 17 7 2.5570 5.2170 -6.0308 18 6 3.5518 6.1516 -6.1134 19 1 4.3257 6.1845 -5.3608 20 6 3.5671 7.0599 -7.1667 21 7 2.6902 6.9531 -8.1388 22 14 4.8345 8.4318 -7.1989 23 1 6.1987 7.8450 -7.2113 24 1 4.6392 9.2577 -8.4174 25 1 4.6730 9.2833 -5.9931 26 6 1.8985 4.7384 -7.2489 27 6 0.6559 5.4972 -7.4654 28 7 -0.3038 6.0826 -7.6324 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9283 2.4718 0.1254 35 1 3.8532 0.9569 1.0572 36 1 3.9996 0.9050 -0.7160 37 1 2.2868 3.6212 0.8013 38 1 2.0888 6.0698 0.8380 39 1 1.2494 7.2799 -1.1318 40 1 0.6065 6.0516 -3.1589 41 1 0.0276 2.5262 -3.4579 42 1 0.7461 3.3288 -5.6442 43 1 2.7006 7.5867 -8.8731 44 1 2.5636 4.8796 -8.1009 45 1 1.6637 3.6794 -7.1429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255290616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:42 Heat of formation + Delta-G solvation = 3.274365 kcal Electronic energy + Delta-G solvation = -28099.551147 eV Core-core repulsion = 24276.432842 eV Total energy + Delta-G solvation = -3823.118306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.40511 -40.61265 -38.66119 -37.50735 -36.19805 -35.09805 -34.46057 -33.69888 -31.17739 -30.79636 -30.18024 -29.13392 -26.99576 -24.93449 -24.73179 -23.50898 -22.50992 -21.41878 -19.95828 -19.59495 -19.12386 -18.28526 -17.98653 -16.99513 -16.63314 -16.26919 -16.13720 -15.78719 -15.70373 -15.21996 -14.96697 -14.73624 -14.69559 -14.47235 -14.44612 -14.06818 -13.87357 -13.66623 -13.53106 -13.32436 -13.10284 -13.04475 -12.91536 -12.75617 -12.56483 -12.42255 -12.34363 -12.16582 -12.10424 -11.92218 -11.88668 -11.51203 -11.35780 -11.02949 -10.73385 -10.29131 -9.82824 -9.19923 -8.75166 -8.35632 -5.99134 -0.04776 0.67292 0.97256 1.41739 1.45805 1.51562 1.96879 2.23212 2.33067 2.35523 2.64148 2.98011 3.11635 3.31087 3.67608 3.78037 3.88025 3.97071 4.05484 4.13858 4.18008 4.25481 4.33601 4.45623 4.53426 4.59264 4.63794 4.72505 4.75055 4.77447 4.90613 5.01831 5.06165 5.12908 5.14577 5.23215 5.25649 5.26615 5.35059 5.44722 5.45786 5.54785 5.63293 5.78521 5.98063 6.16327 6.51088 6.63793 7.02658 7.17400 7.39058 8.03493 8.63216 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.003531 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.617175 B = 7928.843157 C = 8514.684865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C 0.072 3.928 4 H 0.081 0.919 5 C -0.179 4.179 6 O -0.315 6.315 7 C 0.139 3.861 8 C -0.222 4.222 9 C -0.077 4.077 10 C -0.183 4.183 11 C -0.022 4.022 12 C -0.103 4.103 13 C -0.021 4.021 14 C -0.218 4.218 15 C 0.477 3.523 16 O -0.593 6.593 17 N -0.454 5.454 18 C -0.322 4.322 19 H 0.080 0.920 20 C 0.005 3.995 21 N -0.897 5.897 22 Si 0.983 3.017 23 H -0.261 1.261 24 H -0.278 1.278 25 H -0.286 1.286 26 C 0.219 3.781 27 C 0.265 3.735 28 N -0.517 5.517 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.273 0.727 44 H 0.133 0.867 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.614 -13.947 14.576 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C 0.017 3.983 4 H 0.099 0.901 5 C -0.236 4.236 6 O -0.229 6.229 7 C 0.094 3.906 8 C -0.241 4.241 9 C -0.095 4.095 10 C -0.202 4.202 11 C -0.041 4.041 12 C -0.103 4.103 13 C -0.041 4.041 14 C -0.239 4.239 15 C 0.271 3.729 16 O -0.479 6.479 17 N -0.173 5.173 18 C -0.450 4.450 19 H 0.098 0.902 20 C -0.197 4.197 21 N -0.536 5.536 22 Si 0.808 3.192 23 H -0.186 1.186 24 H -0.203 1.203 25 H -0.212 1.212 26 C 0.093 3.907 27 C -0.053 4.053 28 N -0.198 5.198 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.140 0.860 40 H 0.107 0.893 41 H 0.174 0.826 42 H 0.167 0.833 43 H 0.083 0.917 44 H 0.151 0.849 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.778 -12.924 14.438 19.576 hybrid contribution 1.117 1.253 -0.531 1.760 sum -1.661 -11.672 13.907 18.231 Atomic orbital electron populations 1.21757 0.95191 1.02364 1.01758 1.21654 0.96734 0.92696 1.04022 1.22788 0.95418 0.94752 0.85380 0.90077 1.22376 0.94972 1.02509 1.03742 1.86034 1.83646 1.16060 1.37176 1.19011 0.95331 0.82857 0.93433 1.21316 1.08715 0.95328 0.98706 1.21193 0.96209 0.93842 0.98248 1.21010 1.04706 1.00133 0.94320 1.20794 0.94896 0.92421 0.95945 1.18313 1.05842 0.92736 0.93444 1.22353 0.95603 0.95898 0.90266 1.22327 1.00135 1.01762 0.99637 1.17682 0.86255 0.85790 0.83177 1.90729 1.58859 1.63840 1.34468 1.43695 1.32004 1.37320 1.04293 1.19496 1.04938 1.09674 1.10889 0.90208 1.25960 0.99381 0.99148 0.95169 1.69737 1.36154 1.37247 1.10502 0.85127 0.78874 0.78141 0.77070 1.18602 1.20305 1.21204 1.19151 0.85720 0.94353 0.91470 1.29842 0.92615 0.91958 0.90854 1.80906 1.16684 1.11347 1.10845 0.93678 0.91234 0.92454 0.91321 0.87707 0.93278 0.88448 0.92391 0.83204 0.83460 0.86006 0.89327 0.82557 0.83279 0.91711 0.84949 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.81 71.98 0.71 -1.58 16 2 C -0.11 -1.67 5.64 30.60 0.17 -1.50 16 3 C 0.07 1.40 2.22 30.59 0.07 1.47 16 4 H 0.08 1.41 6.32 -2.39 -0.02 1.39 16 5 C -0.18 -3.31 9.17 71.98 0.66 -2.65 16 6 O -0.31 -8.84 8.79 -90.22 -0.79 -9.64 16 7 C 0.14 4.51 6.62 22.88 0.15 4.67 16 8 C -0.22 -6.30 8.23 22.33 0.18 -6.12 16 9 C -0.08 -2.25 10.03 22.33 0.22 -2.02 16 10 C -0.18 -6.43 10.02 22.23 0.22 -6.21 16 11 C -0.02 -0.88 6.79 22.57 0.15 -0.73 16 12 C -0.10 -3.81 4.29 -20.06 -0.09 -3.89 16 13 C -0.02 -0.70 9.33 23.83 0.22 -0.47 16 14 C -0.22 -8.02 8.87 22.44 0.20 -7.83 16 15 C 0.48 22.17 6.61 85.12 0.56 22.73 16 16 O -0.59 -31.09 12.03 -4.60 -0.06 -31.15 16 17 N -0.45 -21.56 2.59 -655.35 -1.70 -23.26 16 18 C -0.32 -16.93 9.18 84.13 0.77 -16.16 16 19 H 0.08 4.48 7.49 -2.91 -0.02 4.46 16 20 C 0.00 0.24 5.36 84.97 0.46 0.69 16 21 N -0.90 -44.97 8.78 21.69 0.19 -44.78 16 22 Si 0.98 41.82 29.56 68.60 2.03 43.85 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 24 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 26 C 0.22 8.74 4.79 84.57 0.41 9.15 16 27 C 0.26 11.75 13.36 89.44 1.19 12.95 16 28 N -0.52 -24.82 18.54 20.01 0.37 -24.45 16 29 H 0.04 0.84 7.82 -2.39 -0.02 0.82 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.08 6.90 -2.39 -0.02 1.06 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.15 3.25 5.42 -2.91 -0.02 3.24 16 38 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 39 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 40 H 0.09 3.96 7.51 -2.91 -0.02 3.94 16 41 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 42 H 0.15 4.45 6.12 -2.91 -0.02 4.43 16 43 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 44 H 0.13 5.50 6.36 -2.38 -0.02 5.49 16 45 H 0.13 3.77 6.34 -2.39 -0.02 3.75 16 Total: -1.00 -68.48 373.56 7.31 -61.16 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 1.01 Total: 25.75 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 6.27 Total: 2.51 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -1.14 Total: -92.49 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.85 Total: -40.79 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -68.48 7.31 -61.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255290616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.438 kcal (2) G-P(sol) polarization free energy of solvation -68.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds