Wall clock time and date at job start Tue Mar 31 2020 15:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3 17 17 H 1.09010 * 109.46880 * 60.00413 * 16 14 13 18 18 C 1.52994 * 109.47701 * 300.00314 * 16 14 13 19 19 N 1.46499 * 109.47347 * 179.97438 * 16 14 13 20 20 C 1.36544 * 118.86038 * 59.73418 * 19 16 14 21 21 C 1.34289 * 122.41278 * 179.69858 * 20 19 16 22 22 C 1.46377 * 119.41660 * 0.56830 * 21 20 19 23 23 C 1.39570 * 122.04488 * 179.70410 * 22 21 20 24 24 C 1.36728 * 119.49081 * 180.02562 * 23 22 21 25 25 C 1.38897 * 120.89005 * 0.02562 * 24 23 22 26 26 C 1.36742 * 120.88635 * 359.97438 * 25 24 23 27 27 C 1.39467 * 119.50516 * 0.02562 * 26 25 24 28 28 C 1.34786 * 118.86912 * 240.00434 * 19 16 14 29 29 O 1.21786 * 120.38195 * 0.02562 * 28 19 16 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 36 36 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 37 37 H 1.08997 * 109.47165 * 300.00330 * 18 16 14 38 38 H 1.09009 * 109.47137 * 59.99628 * 18 16 14 39 39 H 1.09000 * 109.47565 * 179.97438 * 18 16 14 40 40 H 1.07995 * 118.79099 * 0.02562 * 20 19 16 41 41 H 1.07996 * 120.29322 * 180.31302 * 21 20 19 42 42 H 1.07997 * 120.25987 * 0.02562 * 23 22 21 43 43 H 1.08001 * 119.55678 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.55704 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.25070 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0363 3.3375 2.6549 17 1 0.7277 4.1529 2.8680 18 6 0.0798 2.3204 3.7970 19 7 -1.3222 3.8709 2.5269 20 6 -2.3453 3.0093 2.2526 21 6 -3.6177 3.4198 2.1262 22 6 -3.9324 4.8417 2.2734 23 6 -5.2341 5.3290 2.1470 24 6 -5.4689 6.6679 2.2943 25 6 -4.4298 7.5483 2.5671 26 6 -3.1447 7.0990 2.6962 27 6 -2.8749 5.7384 2.5512 28 6 -1.5181 5.1957 2.6785 29 8 -0.5793 5.9339 2.9174 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8292 -0.0609 -2.9500 36 1 2.2719 2.1231 1.9979 37 1 -0.6115 1.5051 3.5839 38 1 1.0908 1.9239 3.8921 39 1 -0.2082 2.8074 4.7286 40 1 -2.1239 1.9585 2.1381 41 1 -4.4013 2.7076 1.9137 42 1 -6.0498 4.6538 1.9346 43 1 -6.4757 7.0462 2.1963 44 1 -4.6395 8.6018 2.6788 45 1 -2.3446 7.7926 2.9089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279311718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:49 Heat of formation + Delta-G solvation = -50.897727 kcal Electronic energy + Delta-G solvation = -28170.862713 eV Core-core repulsion = 24345.395329 eV Total energy + Delta-G solvation = -3825.467384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.56316 -40.78098 -39.36544 -38.05523 -36.86284 -34.99357 -34.23203 -32.88947 -32.37422 -31.29524 -30.22356 -28.89245 -26.17242 -25.21441 -24.87561 -24.16237 -22.68998 -22.03790 -21.14986 -19.65515 -18.95537 -18.80116 -18.21852 -17.59981 -17.10652 -16.58192 -16.40713 -16.27919 -16.15063 -15.86648 -15.57617 -14.89668 -14.82746 -14.62355 -14.30722 -14.07281 -13.76577 -13.73872 -13.66455 -13.46260 -13.34188 -13.18434 -12.89828 -12.79704 -12.72458 -12.58316 -12.42173 -12.15113 -12.04870 -11.97722 -11.57806 -11.21676 -11.05762 -10.89361 -10.57265 -10.39213 -10.04478 -9.70564 -8.69333 -8.18474 -6.35420 -0.24943 -0.00559 1.18852 1.40140 1.41769 1.44721 1.54962 1.64053 1.89379 2.32944 2.53639 3.02365 3.11288 3.34022 3.61375 3.73948 3.81540 3.83762 3.95997 4.04832 4.09088 4.37052 4.42192 4.51313 4.54638 4.59532 4.66592 4.74241 4.76444 4.88632 4.92387 5.03745 5.06011 5.07887 5.26535 5.29439 5.43941 5.47642 5.50910 5.53255 5.58093 5.59752 5.78877 5.88808 5.95971 6.10676 6.16275 6.71637 6.72240 6.86864 7.28895 7.45065 8.86668 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021816 B = 0.002935 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.143175 B = 9538.169281 C = 9889.430393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.005 1.005 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.287 1.287 13 N -0.695 5.695 14 C 0.494 3.506 15 O -0.569 6.569 16 C 0.100 3.900 17 H 0.125 0.875 18 C -0.147 4.147 19 N -0.499 5.499 20 C 0.124 3.876 21 C -0.207 4.207 22 C -0.002 4.002 23 C -0.126 4.126 24 C -0.077 4.077 25 C -0.139 4.139 26 C -0.070 4.070 27 C -0.186 4.186 28 C 0.533 3.467 29 O -0.572 6.572 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.022 0.978 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.265 0.735 36 H 0.405 0.595 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.162 0.838 41 H 0.178 0.822 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.155 0.845 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.128 5.889 13.866 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.013 0.987 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.213 1.213 13 N -0.344 5.344 14 C 0.278 3.722 15 O -0.450 6.450 16 C -0.006 4.006 17 H 0.142 0.858 18 C -0.205 4.205 19 N -0.213 5.213 20 C 0.005 3.995 21 C -0.229 4.229 22 C -0.004 4.004 23 C -0.144 4.144 24 C -0.095 4.095 25 C -0.157 4.157 26 C -0.089 4.089 27 C -0.190 4.190 28 C 0.330 3.670 29 O -0.455 6.455 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.240 0.760 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.179 0.821 41 H 0.196 0.804 42 H 0.180 0.820 43 H 0.182 0.818 44 H 0.173 0.827 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.033 6.176 13.172 22.400 hybrid contribution 1.735 0.005 -0.490 1.803 sum -15.298 6.180 12.681 20.809 Atomic orbital electron populations 1.21669 0.96620 0.99318 1.00300 1.21755 0.94083 0.98535 1.01481 1.18400 0.93543 0.89450 0.80883 0.98686 1.21608 0.91536 1.38843 1.06714 0.91170 1.25718 1.03090 0.94435 0.95054 1.70041 1.36892 1.38351 1.09833 0.85371 0.79438 0.77887 0.78092 1.18588 1.20221 1.21296 1.46200 1.14900 1.55411 1.17857 1.20895 0.82745 0.79018 0.89509 1.90702 1.52279 1.60570 1.41408 1.21480 0.84439 0.99822 0.94903 0.85780 1.22131 1.05539 0.97370 0.95481 1.44806 1.08340 1.07300 1.60813 1.21575 0.87218 0.96122 0.94621 1.21788 0.95819 0.94483 1.10815 1.19437 0.93691 0.93002 0.94292 1.21276 0.95017 0.97007 1.01130 1.21520 1.00749 0.92883 0.94310 1.21239 0.91455 1.01889 1.01071 1.20922 0.98602 0.93006 0.96338 1.19961 0.91463 0.96168 1.11364 1.18677 0.90215 0.81095 0.76982 1.90790 1.44845 1.57992 1.51864 0.93197 0.93353 0.95881 0.93578 0.91219 0.92607 0.75983 0.90381 0.88218 0.89536 0.82086 0.80440 0.81974 0.81764 0.82737 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 8.51 71.98 0.61 -4.41 16 2 C -0.12 -5.57 5.45 30.59 0.17 -5.40 16 3 C 0.28 13.91 2.24 44.24 0.10 14.01 16 4 H 0.00 -0.29 7.58 -2.39 -0.02 -0.30 16 5 C -0.55 -28.56 8.73 25.60 0.22 -28.33 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -51.55 11.29 21.45 0.24 -51.31 16 9 Si 0.97 41.92 29.54 68.60 2.03 43.94 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 12 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 13 N -0.69 -27.32 4.91 -446.11 -2.19 -29.51 16 14 C 0.49 18.73 5.50 87.66 0.48 19.21 16 15 O -0.57 -25.67 12.24 -3.04 -0.04 -25.70 16 16 C 0.10 3.00 2.99 44.24 0.13 3.14 16 17 H 0.12 3.96 6.81 -2.38 -0.02 3.95 16 18 C -0.15 -3.03 9.05 71.98 0.65 -2.37 16 19 N -0.50 -15.51 2.37 -626.02 -1.48 -16.99 16 20 C 0.12 3.28 8.01 83.06 0.67 3.95 16 21 C -0.21 -4.61 10.03 23.49 0.24 -4.38 16 22 C 0.00 -0.06 5.89 -20.06 -0.12 -0.18 16 23 C -0.13 -2.10 9.83 22.24 0.22 -1.88 16 24 C -0.08 -1.08 9.96 22.07 0.22 -0.86 16 25 C -0.14 -2.40 9.96 22.08 0.22 -2.18 16 26 C -0.07 -1.75 9.62 22.22 0.21 -1.54 16 27 C -0.19 -5.48 5.90 -20.00 -0.12 -5.59 16 28 C 0.53 18.49 7.62 86.45 0.66 19.15 16 29 O -0.57 -22.87 15.80 -4.62 -0.07 -22.94 16 30 H 0.05 1.89 5.64 -2.39 -0.01 1.87 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.02 1.04 7.85 -2.38 -0.02 1.02 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 3.71 5.95 -2.39 -0.01 3.69 16 35 H 0.26 14.18 8.31 -92.71 -0.77 13.40 16 36 H 0.40 13.40 7.96 -92.71 -0.74 12.66 16 37 H 0.08 1.47 7.15 -2.39 -0.02 1.46 16 38 H 0.10 1.75 7.57 -2.38 -0.02 1.74 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.16 3.89 7.03 -2.91 -0.02 3.87 16 41 H 0.18 2.67 8.06 -2.91 -0.02 2.64 16 42 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 43 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 44 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 45 H 0.12 3.21 7.80 -2.91 -0.02 3.19 16 Total: -1.00 -73.33 366.08 3.77 -69.55 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.28 Total: 29.26 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.01 Total: 3.69 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -3.43 Total: -97.81 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -0.11 Total: -48.65 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -73.33 3.77 -69.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279311718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.655 kcal (2) G-P(sol) polarization free energy of solvation -73.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds