Wall clock time and date at job start Tue Mar 31 2020 15:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 18 18 C 1.53008 * 109.46978 * 300.00009 * 16 14 13 19 19 N 1.46496 * 109.46791 * 180.02562 * 16 14 13 20 20 C 1.36540 * 118.86808 * 59.73014 * 19 16 14 21 21 C 1.34291 * 122.41056 * 179.69659 * 20 19 16 22 22 C 1.46366 * 119.42137 * 0.56192 * 21 20 19 23 23 C 1.39580 * 122.04844 * 179.70367 * 22 21 20 24 24 C 1.36725 * 119.49127 * 180.02562 * 23 22 21 25 25 C 1.38898 * 120.89186 * 0.02562 * 24 23 22 26 26 C 1.36748 * 120.88691 * 359.97438 * 25 24 23 27 27 C 1.39471 * 119.50360 * 359.97438 * 26 25 24 28 28 C 1.34785 * 118.86238 * 239.99795 * 19 16 14 29 29 O 1.21793 * 120.38401 * 0.02562 * 28 19 16 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 37 37 H 1.08998 * 109.46647 * 299.99988 * 18 16 14 38 38 H 1.08996 * 109.46807 * 59.99819 * 18 16 14 39 39 H 1.08991 * 109.46791 * 180.02562 * 18 16 14 40 40 H 1.07996 * 118.78747 * 0.02562 * 20 19 16 41 41 H 1.08008 * 120.28951 * 180.31624 * 21 20 19 42 42 H 1.08000 * 120.25290 * 0.02562 * 23 22 21 43 43 H 1.07999 * 119.55868 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.55905 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.24957 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.0674 2.6131 -3.4685 18 6 1.0069 4.4822 -2.9537 19 7 -1.3221 3.8710 -2.5266 20 6 -1.5782 4.7962 -1.5557 21 6 -2.7950 5.3361 -1.3788 22 6 -3.8996 4.9181 -2.2434 23 6 -5.1872 5.4386 -2.1041 24 6 -6.1805 5.0104 -2.9403 25 6 -5.9253 4.0648 -3.9252 26 6 -4.6736 3.5376 -4.0847 27 6 -3.6401 3.9562 -3.2470 28 6 -2.2773 3.4273 -3.3677 29 8 -2.0119 2.5969 -4.2182 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0605 2.9503 36 1 2.2720 2.1232 -1.9977 37 1 0.9758 5.2068 -2.1401 38 1 2.0178 4.0858 -3.0488 39 1 0.7182 4.9695 -3.8849 40 1 -0.7713 5.1091 -0.9096 41 1 -2.9581 6.0694 -0.6028 42 1 -5.3971 6.1740 -1.3415 43 1 -7.1772 5.4122 -2.8331 44 1 -6.7261 3.7416 -4.5737 45 1 -4.4866 2.8032 -4.8542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279311720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:58 Heat of formation + Delta-G solvation = -32.129938 kcal Electronic energy + Delta-G solvation = -28160.904128 eV Core-core repulsion = 24336.250576 eV Total energy + Delta-G solvation = -3824.653552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.43017 -39.41463 -38.28158 -36.83716 -35.11082 -33.83813 -32.48307 -31.59303 -31.12322 -30.09966 -29.23684 -27.06036 -25.07961 -23.93765 -23.60160 -22.71529 -21.75219 -20.46325 -19.45640 -18.43480 -17.89947 -17.54876 -16.87249 -15.99928 -15.57326 -15.22962 -15.20123 -15.17441 -14.78039 -14.62302 -14.09811 -13.96939 -13.58405 -13.14110 -13.00172 -12.89136 -12.74647 -12.69759 -12.38899 -12.11895 -11.84132 -11.66520 -11.53241 -11.35072 -11.27665 -11.12849 -11.01112 -10.89027 -10.37549 -10.26221 -10.03981 -9.72680 -9.66625 -9.21075 -9.13267 -9.06505 -8.56458 -7.96798 -7.68215 -6.18518 -4.28620 0.69207 0.89228 2.18959 2.52716 2.85842 3.14099 3.20181 3.27569 3.28944 3.82406 4.01335 4.29346 4.38116 4.57227 4.67757 4.77984 4.88787 4.93604 5.02643 5.12805 5.15226 5.20235 5.24917 5.45786 5.58704 5.62769 5.76252 5.83499 5.84527 5.96783 6.19587 6.30439 6.34568 6.35354 6.41104 6.53262 6.61014 6.75778 6.99090 7.12352 7.18984 7.26984 7.33363 7.54046 7.63639 7.81141 7.89375 8.10664 8.50482 8.67321 8.94617 9.38609 10.86679 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024514 B = 0.002871 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.930458 B = 9750.288813 C = 9865.184227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.698 5.698 14 C 0.493 3.507 15 O -0.536 6.536 16 C 0.091 3.909 17 H 0.133 0.867 18 C -0.156 4.156 19 N -0.496 5.496 20 C 0.157 3.843 21 C -0.226 4.226 22 C 0.019 3.981 23 C -0.131 4.131 24 C -0.084 4.084 25 C -0.149 4.149 26 C -0.046 4.046 27 C -0.158 4.158 28 C 0.549 3.451 29 O -0.531 6.531 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.023 0.977 33 H 0.100 0.900 34 H 0.032 0.968 35 H 0.265 0.735 36 H 0.390 0.610 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.818 11.227 -10.239 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.346 5.346 14 C 0.275 3.725 15 O -0.414 6.414 16 C -0.015 4.015 17 H 0.150 0.850 18 C -0.214 4.214 19 N -0.211 5.211 20 C 0.036 3.964 21 C -0.249 4.249 22 C 0.017 3.983 23 C -0.150 4.150 24 C -0.102 4.102 25 C -0.167 4.167 26 C -0.064 4.064 27 C -0.161 4.161 28 C 0.344 3.656 29 O -0.410 6.410 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.118 0.882 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.223 0.777 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.173 0.827 41 H 0.164 0.836 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.122 10.547 -9.885 19.522 hybrid contribution 1.274 -0.129 -0.048 1.282 sum -11.847 10.417 -9.934 18.643 Atomic orbital electron populations 1.21827 0.98330 0.98181 1.01044 1.21945 0.92567 0.99766 1.02418 1.18833 0.94316 0.89196 0.80585 0.93181 1.21199 0.90527 1.39309 1.06375 0.92015 1.24885 0.98655 0.94703 0.95380 1.69892 1.35207 1.37423 1.09296 0.86448 0.84750 0.77683 0.78230 1.20556 1.21048 1.19825 1.46477 1.14009 1.55326 1.18818 1.20279 0.83447 0.80166 0.88563 1.90722 1.51024 1.59784 1.39860 1.21561 0.81221 0.98693 1.00030 0.84975 1.22120 0.99029 0.97366 1.02875 1.44769 1.10202 1.36618 1.29465 1.21335 0.98693 0.87438 0.88898 1.21322 0.90828 1.07943 1.04851 1.19156 0.94029 0.92612 0.92460 1.20852 0.91797 1.01573 1.00740 1.21025 0.99179 0.95771 0.94235 1.20840 0.96852 0.99053 0.99981 1.20797 0.91556 0.97237 0.96850 1.19800 0.93470 1.02028 1.00822 1.18163 0.84889 0.81570 0.80945 1.90838 1.81989 1.32765 1.35445 0.94527 0.93185 0.95769 0.88173 0.94935 0.92489 0.77733 0.91238 0.89598 0.91115 0.82708 0.83599 0.85136 0.85736 0.85616 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.52 37.16 0.32 -2.77 16 2 C -0.13 -3.08 5.45 -26.74 -0.15 -3.22 16 3 C 0.27 6.53 2.24 -69.09 -0.15 6.37 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.52 8.73 -34.44 -0.30 -13.82 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.06 11.29 55.43 0.63 -23.43 16 9 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 N -0.70 -13.49 4.91 -54.94 -0.27 -13.76 16 14 C 0.49 9.11 5.50 -10.98 -0.06 9.05 16 15 O -0.54 -11.63 12.24 5.56 0.07 -11.56 16 16 C 0.09 1.35 2.99 -69.08 -0.21 1.14 16 17 H 0.13 2.00 6.81 -51.93 -0.35 1.65 16 18 C -0.16 -1.73 9.04 37.16 0.34 -1.39 16 19 N -0.50 -7.54 2.37 -111.86 -0.26 -7.80 16 20 C 0.16 2.12 8.01 -16.85 -0.14 1.99 16 21 C -0.23 -2.72 10.03 -37.71 -0.38 -3.10 16 22 C 0.02 0.24 5.89 -104.92 -0.62 -0.37 16 23 C -0.13 -1.32 9.83 -39.63 -0.39 -1.71 16 24 C -0.08 -0.76 9.96 -39.88 -0.40 -1.15 16 25 C -0.15 -1.47 9.96 -39.88 -0.40 -1.86 16 26 C -0.05 -0.57 9.62 -39.66 -0.38 -0.95 16 27 C -0.16 -2.28 5.90 -104.82 -0.62 -2.90 16 28 C 0.55 9.04 7.62 -12.85 -0.10 8.95 16 29 O -0.53 -9.86 15.81 5.11 0.08 -9.78 16 30 H 0.04 0.82 5.65 -51.93 -0.29 0.53 16 31 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.39 6.49 7.96 -40.82 -0.32 6.16 16 37 H 0.07 0.74 7.14 -51.93 -0.37 0.37 16 38 H 0.09 0.86 7.56 -51.93 -0.39 0.47 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.16 1.94 7.02 -52.49 -0.37 1.57 16 41 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 42 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 45 H 0.13 1.61 7.80 -52.49 -0.41 1.20 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -31.42 366.08 -9.11 -40.53 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.12 Total: 9.39 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -3.72 Total: -4.10 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.09 Total: -45.00 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: 0.15 Total: -21.34 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.42 -9.11 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279311720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.399 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds