Wall clock time and date at job start Tue Mar 31 2020 15:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 18 18 C 1.53008 * 109.46978 * 300.00009 * 16 14 13 19 19 N 1.46496 * 109.46791 * 180.02562 * 16 14 13 20 20 C 1.36540 * 118.86808 * 59.73014 * 19 16 14 21 21 C 1.34291 * 122.41056 * 179.69659 * 20 19 16 22 22 C 1.46366 * 119.42137 * 0.56192 * 21 20 19 23 23 C 1.39580 * 122.04844 * 179.70367 * 22 21 20 24 24 C 1.36725 * 119.49127 * 180.02562 * 23 22 21 25 25 C 1.38898 * 120.89186 * 0.02562 * 24 23 22 26 26 C 1.36748 * 120.88691 * 359.97438 * 25 24 23 27 27 C 1.39471 * 119.50360 * 359.97438 * 26 25 24 28 28 C 1.34785 * 118.86238 * 239.99795 * 19 16 14 29 29 O 1.21793 * 120.38401 * 0.02562 * 28 19 16 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 37 37 H 1.08998 * 109.46647 * 299.99988 * 18 16 14 38 38 H 1.08996 * 109.46807 * 59.99819 * 18 16 14 39 39 H 1.08991 * 109.46791 * 180.02562 * 18 16 14 40 40 H 1.07996 * 118.78747 * 0.02562 * 20 19 16 41 41 H 1.08008 * 120.28951 * 180.31624 * 21 20 19 42 42 H 1.08000 * 120.25290 * 0.02562 * 23 22 21 43 43 H 1.07999 * 119.55868 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.55905 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.24957 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.0674 2.6131 -3.4685 18 6 1.0069 4.4822 -2.9537 19 7 -1.3221 3.8710 -2.5266 20 6 -1.5782 4.7962 -1.5557 21 6 -2.7950 5.3361 -1.3788 22 6 -3.8996 4.9181 -2.2434 23 6 -5.1872 5.4386 -2.1041 24 6 -6.1805 5.0104 -2.9403 25 6 -5.9253 4.0648 -3.9252 26 6 -4.6736 3.5376 -4.0847 27 6 -3.6401 3.9562 -3.2470 28 6 -2.2773 3.4273 -3.3677 29 8 -2.0119 2.5969 -4.2182 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0605 2.9503 36 1 2.2720 2.1232 -1.9977 37 1 0.9758 5.2068 -2.1401 38 1 2.0178 4.0858 -3.0488 39 1 0.7182 4.9695 -3.8849 40 1 -0.7713 5.1091 -0.9096 41 1 -2.9581 6.0694 -0.6028 42 1 -5.3971 6.1740 -1.3415 43 1 -7.1772 5.4122 -2.8331 44 1 -6.7261 3.7416 -4.5737 45 1 -4.4866 2.8032 -4.8542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279311720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:55 Heat of formation + Delta-G solvation = -50.462016 kcal Electronic energy + Delta-G solvation = -28161.699066 eV Core-core repulsion = 24336.250576 eV Total energy + Delta-G solvation = -3825.448490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.55860 -40.77474 -39.36353 -38.06540 -36.86545 -35.00025 -34.22255 -32.94357 -32.37041 -31.27227 -30.21537 -28.93574 -26.17880 -25.23298 -24.85495 -24.17699 -22.68856 -22.06690 -21.16473 -19.65839 -18.93182 -18.79499 -18.22458 -17.57751 -17.18783 -16.52808 -16.38674 -16.32751 -16.14787 -15.76994 -15.48653 -15.15618 -14.84790 -14.62341 -14.24907 -14.07591 -13.84676 -13.72372 -13.66311 -13.44283 -13.33279 -13.19597 -12.91117 -12.79515 -12.70350 -12.58156 -12.44146 -12.19698 -12.09519 -11.97836 -11.63520 -11.20676 -11.08384 -10.89255 -10.55682 -10.39555 -10.04351 -9.71319 -8.69483 -8.16428 -6.33568 -0.24880 -0.00600 1.18838 1.40393 1.45535 1.46813 1.56409 1.64426 1.89127 2.34133 2.54547 3.02381 3.13581 3.34008 3.61663 3.74127 3.81509 3.83462 3.95498 4.04493 4.09250 4.37115 4.42271 4.42498 4.48751 4.54603 4.65379 4.69279 4.74090 4.88284 4.92285 5.01387 5.03826 5.07155 5.18627 5.28946 5.37083 5.47526 5.49441 5.51047 5.58810 5.59425 5.74316 5.87060 5.95969 6.10684 6.13270 6.71878 6.73483 6.87142 7.30120 7.45939 8.88854 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024514 B = 0.002871 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.930458 B = 9750.288813 C = 9865.184227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.282 3.718 4 H 0.005 0.995 5 C -0.545 4.545 6 H 0.075 0.925 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.261 1.261 13 N -0.695 5.695 14 C 0.494 3.506 15 O -0.569 6.569 16 C 0.101 3.899 17 H 0.127 0.873 18 C -0.148 4.148 19 N -0.498 5.498 20 C 0.123 3.877 21 C -0.207 4.207 22 C -0.003 4.003 23 C -0.127 4.127 24 C -0.077 4.077 25 C -0.138 4.138 26 C -0.069 4.069 27 C -0.186 4.186 28 C 0.534 3.466 29 O -0.571 6.571 30 H 0.033 0.967 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.405 0.595 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.160 0.840 41 H 0.177 0.823 42 H 0.162 0.838 43 H 0.165 0.835 44 H 0.155 0.845 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.888 13.124 -11.033 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.179 3.821 4 H 0.023 0.977 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.185 1.185 13 N -0.344 5.344 14 C 0.279 3.721 15 O -0.449 6.449 16 C -0.006 4.006 17 H 0.145 0.855 18 C -0.206 4.206 19 N -0.212 5.212 20 C 0.004 3.996 21 C -0.229 4.229 22 C -0.004 4.004 23 C -0.145 4.145 24 C -0.095 4.095 25 C -0.156 4.156 26 C -0.088 4.088 27 C -0.189 4.189 28 C 0.331 3.669 29 O -0.453 6.453 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.240 0.760 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.177 0.823 41 H 0.194 0.806 42 H 0.179 0.821 43 H 0.182 0.818 44 H 0.173 0.827 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.189 12.486 -10.698 21.719 hybrid contribution 1.397 -0.664 0.217 1.562 sum -12.793 11.822 -10.481 20.329 Atomic orbital electron populations 1.21650 0.97417 0.98897 0.99849 1.21817 0.93247 0.99709 1.01349 1.18377 0.93794 0.88786 0.81120 0.97672 1.21552 0.91187 1.38926 1.06677 0.90713 1.25744 1.03142 0.94378 0.95101 1.70043 1.37050 1.38366 1.09859 0.85394 0.79295 0.77381 0.78571 1.20269 1.21309 1.18492 1.46196 1.14941 1.55361 1.17898 1.20894 0.82473 0.79287 0.89488 1.90699 1.51871 1.60792 1.41579 1.21481 0.82331 0.99775 0.96997 0.85510 1.22128 0.98518 0.96096 1.03835 1.44800 1.09954 1.36768 1.29725 1.21555 0.99854 0.88520 0.89655 1.21777 0.89983 1.06892 1.04254 1.19430 0.95574 0.92963 0.92470 1.21271 0.90593 1.01380 1.01233 1.21516 1.00708 0.94486 0.92743 1.21243 0.96238 0.98091 1.00061 1.20925 0.92585 0.98146 0.97116 1.19964 0.92824 1.03533 1.02606 1.18655 0.85980 0.81399 0.80823 1.90789 1.82698 1.34677 1.37171 0.94750 0.95208 0.94001 0.90725 0.94286 0.92632 0.75975 0.90667 0.88278 0.89494 0.82304 0.80561 0.82065 0.81785 0.82698 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.52 71.98 0.61 -5.02 16 2 C -0.12 -6.03 5.45 30.59 0.17 -5.87 16 3 C 0.28 13.95 2.24 44.24 0.10 14.04 16 4 H 0.01 0.31 7.58 -2.39 -0.02 0.30 16 5 C -0.55 -27.66 8.73 25.60 0.22 -27.44 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.87 5.29 84.65 0.45 1.31 16 8 N -0.91 -51.25 11.29 21.45 0.24 -51.01 16 9 Si 0.97 40.97 29.54 68.60 2.03 43.00 16 10 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 13 N -0.69 -27.27 4.91 -446.11 -2.19 -29.47 16 14 C 0.49 18.76 5.50 87.66 0.48 19.24 16 15 O -0.57 -25.70 12.24 -3.03 -0.04 -25.73 16 16 C 0.10 3.02 2.99 44.25 0.13 3.16 16 17 H 0.13 3.97 6.81 -2.39 -0.02 3.96 16 18 C -0.15 -3.16 9.04 71.98 0.65 -2.51 16 19 N -0.50 -15.52 2.37 -625.99 -1.48 -17.01 16 20 C 0.12 3.34 8.01 83.06 0.67 4.01 16 21 C -0.21 -4.70 10.03 23.48 0.24 -4.47 16 22 C 0.00 -0.06 5.89 -20.06 -0.12 -0.18 16 23 C -0.13 -2.12 9.83 22.24 0.22 -1.90 16 24 C -0.08 -1.07 9.96 22.07 0.22 -0.85 16 25 C -0.14 -2.36 9.96 22.08 0.22 -2.14 16 26 C -0.07 -1.70 9.62 22.22 0.21 -1.49 16 27 C -0.19 -5.42 5.90 -19.99 -0.12 -5.54 16 28 C 0.53 18.33 7.62 86.45 0.66 18.99 16 29 O -0.57 -22.39 15.81 -4.65 -0.07 -22.46 16 30 H 0.03 1.59 5.65 -2.39 -0.01 1.57 16 31 H 0.03 1.47 7.85 -2.39 -0.02 1.45 16 32 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.07 4.10 5.95 -2.39 -0.01 4.09 16 34 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 36 H 0.40 13.36 7.96 -92.71 -0.74 12.62 16 37 H 0.07 1.53 7.14 -2.39 -0.02 1.51 16 38 H 0.10 1.84 7.56 -2.39 -0.02 1.83 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 40 H 0.16 4.02 7.02 -2.91 -0.02 4.00 16 41 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 42 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 44 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.13 3.17 7.80 -2.91 -0.02 3.15 16 Total: -1.00 -71.64 366.08 3.77 -67.87 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.28 Total: 31.46 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 5.01 Total: 3.35 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -3.43 Total: -97.48 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -0.11 Total: -48.19 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -71.64 3.77 -67.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279311720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.406 kcal (2) G-P(sol) polarization free energy of solvation -71.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds