Wall clock time and date at job start Tue Mar 31 2020 15:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46719 * 2 1 4 4 H 1.08993 * 109.47768 * 55.00044 * 3 2 1 5 5 C 1.50708 * 109.46800 * 174.99892 * 3 2 1 6 6 H 1.07995 * 120.00123 * 119.99855 * 5 3 2 7 7 C 1.37873 * 120.00025 * 299.99481 * 5 3 2 8 8 N 1.31519 * 120.00198 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00197 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46963 * 90.00244 * 9 7 5 11 11 H 1.48495 * 109.46937 * 210.00331 * 9 7 5 12 12 H 1.48495 * 109.46785 * 330.00266 * 9 7 5 13 13 N 1.46496 * 109.47078 * 294.99342 * 3 2 1 14 14 C 1.34777 * 119.99885 * 85.00180 * 13 3 2 15 15 O 1.21278 * 119.99989 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00189 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.47370 * 300.00641 * 16 14 13 18 18 C 1.53006 * 109.47116 * 60.00330 * 16 14 13 19 19 N 1.46502 * 109.47541 * 180.02562 * 16 14 13 20 20 C 1.36545 * 118.86009 * 300.00263 * 19 16 14 21 21 C 1.34289 * 122.41028 * 179.97438 * 20 19 16 22 22 C 1.46365 * 119.42211 * 359.97438 * 21 20 19 23 23 C 1.39573 * 122.04869 * 179.97438 * 22 21 20 24 24 C 1.36723 * 119.49041 * 180.02562 * 23 22 21 25 25 C 1.38901 * 120.89427 * 0.02562 * 24 23 22 26 26 C 1.36747 * 120.88261 * 0.02562 * 25 24 23 27 27 C 1.39463 * 119.50366 * 359.97438 * 26 25 24 28 28 C 1.34783 * 118.86696 * 119.97745 * 19 16 14 29 29 O 1.21785 * 120.38129 * 0.02562 * 28 19 16 30 30 H 1.08993 * 109.47413 * 300.00619 * 1 2 3 31 31 H 1.09004 * 109.46771 * 60.00578 * 1 2 3 32 32 H 1.09005 * 109.46904 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47582 * 239.99949 * 2 1 3 34 34 H 1.09004 * 109.46771 * 119.99422 * 2 1 3 35 35 H 0.96994 * 120.00354 * 180.02562 * 8 7 5 36 36 H 0.96995 * 120.00472 * 265.00162 * 13 3 2 37 37 H 1.08994 * 109.46792 * 59.99843 * 18 16 14 38 38 H 1.09002 * 109.47125 * 179.97438 * 18 16 14 39 39 H 1.08998 * 109.47004 * 299.99919 * 18 16 14 40 40 H 1.08008 * 118.79229 * 359.69644 * 20 19 16 41 41 H 1.08000 * 120.28844 * 180.02562 * 21 20 19 42 42 H 1.07993 * 120.25248 * 0.02562 * 23 22 21 43 43 H 1.08004 * 119.55677 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.55456 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.24629 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8786 1.2280 8 7 3.4062 0.3368 2.1730 9 14 6.0049 0.8815 1.3820 10 1 6.4415 2.1144 2.0851 11 1 6.4394 -0.3095 2.1551 12 1 6.6135 0.8418 0.0280 13 7 1.6525 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3671 15 8 -0.3393 2.6326 -0.4343 16 6 0.0367 3.3384 -2.6546 17 1 0.7281 4.1539 -2.8669 18 6 0.0808 2.3220 -3.7974 19 7 -1.3219 3.8715 -2.5267 20 6 -2.3459 3.0088 -2.2589 21 6 -3.6174 3.4199 -2.1268 22 6 -3.9322 4.8419 -2.2721 23 6 -5.2341 5.3289 -2.1463 24 6 -5.4689 6.6679 -2.2927 25 6 -4.4299 7.5485 -2.5652 26 6 -3.1448 7.0994 -2.6947 27 6 -2.8750 5.7387 -2.5505 28 6 -1.5178 5.1965 -2.6770 29 8 -0.5791 5.9348 -2.9154 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 3.8292 -0.0609 2.9500 36 1 2.2719 2.1231 -1.9978 37 1 -0.6106 1.5066 -3.5852 38 1 -0.2079 2.8095 -4.7286 39 1 1.0917 1.9258 -3.8925 40 1 -2.1256 1.9566 -2.1538 41 1 -4.4009 2.7075 -1.9144 42 1 -6.0497 4.6533 -1.9350 43 1 -6.4760 7.0458 -2.1960 44 1 -4.6400 8.6020 -2.6770 45 1 -2.3447 7.7933 -2.9062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279311722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:05 Heat of formation + Delta-G solvation = -32.046861 kcal Electronic energy + Delta-G solvation = -28169.327628 eV Core-core repulsion = 24344.677679 eV Total energy + Delta-G solvation = -3824.649949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.43311 -39.42288 -38.28347 -36.82945 -35.11900 -33.83738 -32.47868 -31.58660 -31.12975 -30.16329 -29.25123 -27.03257 -25.09182 -23.93438 -23.60847 -22.75227 -21.75294 -20.47934 -19.46289 -18.43370 -17.90579 -17.56061 -16.86175 -15.98691 -15.55987 -15.29967 -15.18466 -15.08916 -14.79666 -14.68012 -14.22003 -13.96521 -13.36135 -13.14119 -13.10628 -12.88222 -12.76024 -12.72935 -12.41567 -12.17407 -11.86234 -11.70971 -11.51306 -11.32794 -11.30066 -11.10558 -11.02700 -10.89429 -10.38826 -10.26732 -10.04914 -9.75058 -9.68445 -9.20909 -9.13764 -9.06631 -8.56471 -7.96723 -7.68825 -6.18002 -4.27785 0.69276 0.89242 2.18829 2.52562 2.85915 3.14226 3.21784 3.28810 3.30172 3.82503 4.01212 4.30927 4.38032 4.56259 4.67647 4.77973 4.87622 4.92724 5.01380 5.13727 5.15239 5.19795 5.24908 5.45071 5.57864 5.61498 5.75970 5.82583 5.84618 5.94582 6.19371 6.28685 6.30568 6.32534 6.35187 6.52854 6.54538 6.75830 6.91900 7.08645 7.18843 7.24665 7.31324 7.52544 7.63597 7.81398 7.89691 8.09906 8.50551 8.68144 8.94847 9.39504 10.87283 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021808 B = 0.002935 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.631185 B = 9537.921347 C = 9888.977032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.698 5.698 14 C 0.493 3.507 15 O -0.536 6.536 16 C 0.091 3.909 17 H 0.133 0.867 18 C -0.156 4.156 19 N -0.497 5.497 20 C 0.157 3.843 21 C -0.226 4.226 22 C 0.019 3.981 23 C -0.131 4.131 24 C -0.084 4.084 25 C -0.149 4.149 26 C -0.046 4.046 27 C -0.158 4.158 28 C 0.549 3.451 29 O -0.530 6.530 30 H 0.050 0.950 31 H 0.035 0.965 32 H 0.024 0.976 33 H 0.032 0.968 34 H 0.100 0.900 35 H 0.265 0.735 36 H 0.390 0.610 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.155 0.845 41 H 0.146 0.854 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.100 5.952 -12.329 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.346 5.346 14 C 0.276 3.724 15 O -0.414 6.414 16 C -0.015 4.015 17 H 0.151 0.849 18 C -0.214 4.214 19 N -0.211 5.211 20 C 0.036 3.964 21 C -0.249 4.249 22 C 0.017 3.983 23 C -0.150 4.150 24 C -0.102 4.102 25 C -0.167 4.167 26 C -0.064 4.064 27 C -0.161 4.161 28 C 0.344 3.656 29 O -0.409 6.409 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.223 0.777 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.172 0.828 41 H 0.164 0.836 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.984 6.249 -11.595 19.950 hybrid contribution 1.286 -0.112 -0.038 1.292 sum -13.698 6.137 -11.633 18.990 Atomic orbital electron populations 1.21835 0.98433 0.98069 1.00989 1.21935 0.92531 0.99679 1.02450 1.18836 0.94372 0.89160 0.80651 0.93262 1.21214 0.90580 1.39195 1.06451 0.92013 1.24878 0.98686 0.94703 0.95333 1.69883 1.35209 1.37500 1.09306 0.86446 0.84731 0.77691 0.78244 1.20535 1.21041 1.19810 1.46470 1.14029 1.55312 1.18814 1.20273 0.83683 0.79907 0.88580 1.90720 1.51391 1.59501 1.39761 1.21558 0.84279 0.99621 0.96076 0.84892 1.22120 1.04296 0.98231 0.96733 1.44763 1.07959 1.07359 1.60987 1.21319 0.86882 0.95927 0.92272 1.21316 0.95698 0.94042 1.13847 1.19149 0.92838 0.92925 0.93369 1.20847 0.95564 0.95841 1.02706 1.21026 0.99254 0.93433 0.96503 1.20843 0.92538 1.00096 1.03228 1.20800 0.97269 0.93639 0.94732 1.19799 0.91997 0.94891 1.09393 1.18164 0.89440 0.80837 0.77138 1.90840 1.43632 1.57089 1.49384 0.93107 0.94634 0.95725 0.94911 0.88168 0.92500 0.77737 0.91325 0.91064 0.89646 0.82812 0.83614 0.85139 0.85734 0.85606 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.52 37.16 0.32 -2.48 16 2 C -0.13 -2.91 5.45 -26.73 -0.15 -3.06 16 3 C 0.27 6.52 2.24 -69.08 -0.15 6.36 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.18 11.29 55.43 0.63 -23.56 16 9 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 13 N -0.70 -13.52 4.91 -54.94 -0.27 -13.79 16 14 C 0.49 9.14 5.50 -10.99 -0.06 9.08 16 15 O -0.54 -11.65 12.27 5.56 0.07 -11.59 16 16 C 0.09 1.35 2.99 -69.08 -0.21 1.14 16 17 H 0.13 2.03 6.81 -51.93 -0.35 1.68 16 18 C -0.16 -1.70 9.04 37.16 0.34 -1.36 16 19 N -0.50 -7.56 2.37 -111.86 -0.26 -7.82 16 20 C 0.16 2.11 8.02 -16.85 -0.14 1.97 16 21 C -0.23 -2.71 10.03 -37.71 -0.38 -3.09 16 22 C 0.02 0.24 5.89 -104.93 -0.62 -0.38 16 23 C -0.13 -1.32 9.83 -39.63 -0.39 -1.71 16 24 C -0.08 -0.76 9.96 -39.88 -0.40 -1.16 16 25 C -0.15 -1.47 9.96 -39.88 -0.40 -1.87 16 26 C -0.05 -0.57 9.62 -39.66 -0.38 -0.95 16 27 C -0.16 -2.28 5.90 -104.82 -0.62 -2.90 16 28 C 0.55 9.10 7.62 -12.84 -0.10 9.00 16 29 O -0.53 -9.94 15.80 5.11 0.08 -9.86 16 30 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 31 H 0.03 0.68 5.65 -51.93 -0.29 0.38 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.39 6.50 7.96 -40.82 -0.32 6.17 16 37 H 0.07 0.71 7.13 -51.93 -0.37 0.34 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.83 7.56 -51.93 -0.39 0.44 16 40 H 0.15 1.90 7.03 -52.48 -0.37 1.53 16 41 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.13 1.62 7.80 -52.48 -0.41 1.21 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -31.64 366.10 -9.11 -40.75 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.12 Total: 8.80 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -3.72 Total: -3.76 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.09 Total: -45.16 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.15 Total: -21.44 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.64 -9.11 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279311722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.706 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds