Wall clock time and date at job start Tue Mar 31 2020 15:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46719 * 2 1 4 4 H 1.08993 * 109.47768 * 55.00044 * 3 2 1 5 5 C 1.50708 * 109.46800 * 174.99892 * 3 2 1 6 6 H 1.07995 * 120.00123 * 119.99855 * 5 3 2 7 7 C 1.37873 * 120.00025 * 299.99481 * 5 3 2 8 8 N 1.31519 * 120.00198 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00197 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46963 * 90.00244 * 9 7 5 11 11 H 1.48495 * 109.46937 * 210.00331 * 9 7 5 12 12 H 1.48495 * 109.46785 * 330.00266 * 9 7 5 13 13 N 1.46496 * 109.47078 * 294.99342 * 3 2 1 14 14 C 1.34777 * 119.99885 * 85.00180 * 13 3 2 15 15 O 1.21278 * 119.99989 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00189 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.47370 * 300.00641 * 16 14 13 18 18 C 1.53006 * 109.47116 * 60.00330 * 16 14 13 19 19 N 1.46502 * 109.47541 * 180.02562 * 16 14 13 20 20 C 1.36545 * 118.86009 * 300.00263 * 19 16 14 21 21 C 1.34289 * 122.41028 * 179.97438 * 20 19 16 22 22 C 1.46365 * 119.42211 * 359.97438 * 21 20 19 23 23 C 1.39573 * 122.04869 * 179.97438 * 22 21 20 24 24 C 1.36723 * 119.49041 * 180.02562 * 23 22 21 25 25 C 1.38901 * 120.89427 * 0.02562 * 24 23 22 26 26 C 1.36747 * 120.88261 * 0.02562 * 25 24 23 27 27 C 1.39463 * 119.50366 * 359.97438 * 26 25 24 28 28 C 1.34783 * 118.86696 * 119.97745 * 19 16 14 29 29 O 1.21785 * 120.38129 * 0.02562 * 28 19 16 30 30 H 1.08993 * 109.47413 * 300.00619 * 1 2 3 31 31 H 1.09004 * 109.46771 * 60.00578 * 1 2 3 32 32 H 1.09005 * 109.46904 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47582 * 239.99949 * 2 1 3 34 34 H 1.09004 * 109.46771 * 119.99422 * 2 1 3 35 35 H 0.96994 * 120.00354 * 180.02562 * 8 7 5 36 36 H 0.96995 * 120.00472 * 265.00162 * 13 3 2 37 37 H 1.08994 * 109.46792 * 59.99843 * 18 16 14 38 38 H 1.09002 * 109.47125 * 179.97438 * 18 16 14 39 39 H 1.08998 * 109.47004 * 299.99919 * 18 16 14 40 40 H 1.08008 * 118.79229 * 359.69644 * 20 19 16 41 41 H 1.08000 * 120.28844 * 180.02562 * 21 20 19 42 42 H 1.07993 * 120.25248 * 0.02562 * 23 22 21 43 43 H 1.08004 * 119.55677 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.55456 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.24629 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8786 1.2280 8 7 3.4062 0.3368 2.1730 9 14 6.0049 0.8815 1.3820 10 1 6.4415 2.1144 2.0851 11 1 6.4394 -0.3095 2.1551 12 1 6.6135 0.8418 0.0280 13 7 1.6525 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3671 15 8 -0.3393 2.6326 -0.4343 16 6 0.0367 3.3384 -2.6546 17 1 0.7281 4.1539 -2.8669 18 6 0.0808 2.3220 -3.7974 19 7 -1.3219 3.8715 -2.5267 20 6 -2.3459 3.0088 -2.2589 21 6 -3.6174 3.4199 -2.1268 22 6 -3.9322 4.8419 -2.2721 23 6 -5.2341 5.3289 -2.1463 24 6 -5.4689 6.6679 -2.2927 25 6 -4.4299 7.5485 -2.5652 26 6 -3.1448 7.0994 -2.6947 27 6 -2.8750 5.7387 -2.5505 28 6 -1.5178 5.1965 -2.6770 29 8 -0.5791 5.9348 -2.9154 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 3.8292 -0.0609 2.9500 36 1 2.2719 2.1231 -1.9978 37 1 -0.6106 1.5066 -3.5852 38 1 -0.2079 2.8095 -4.7286 39 1 1.0917 1.9258 -3.8925 40 1 -2.1256 1.9566 -2.1538 41 1 -4.4009 2.7075 -1.9144 42 1 -6.0497 4.6533 -1.9350 43 1 -6.4760 7.0458 -2.1960 44 1 -4.6400 8.6020 -2.6770 45 1 -2.3447 7.7933 -2.9062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279311722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:04 Heat of formation + Delta-G solvation = -50.837190 kcal Electronic energy + Delta-G solvation = -28170.142438 eV Core-core repulsion = 24344.677679 eV Total energy + Delta-G solvation = -3825.464759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.56269 -40.78078 -39.36556 -38.05564 -36.86287 -34.99302 -34.23103 -32.88885 -32.37437 -31.29452 -30.22403 -28.89079 -26.17272 -25.21365 -24.87606 -24.16189 -22.69014 -22.03712 -21.14976 -19.65300 -18.95505 -18.80179 -18.21829 -17.59959 -17.10549 -16.57970 -16.40833 -16.27788 -16.15067 -15.86976 -15.57582 -14.89747 -14.82789 -14.61839 -14.30609 -14.07294 -13.76874 -13.73893 -13.66071 -13.46185 -13.34247 -13.18018 -12.90242 -12.79669 -12.71801 -12.58580 -12.41957 -12.16208 -12.04642 -11.97684 -11.57203 -11.21630 -11.07062 -10.89382 -10.56584 -10.39150 -10.04501 -9.70568 -8.69307 -8.18237 -6.35357 -0.24936 -0.00605 1.18892 1.40078 1.42890 1.44759 1.53938 1.64113 1.89374 2.33010 2.53807 3.02391 3.11432 3.34046 3.61211 3.73973 3.81465 3.83655 3.96036 4.04841 4.09051 4.37027 4.42170 4.51408 4.54680 4.59500 4.66449 4.74246 4.76473 4.88612 4.92356 5.03741 5.06023 5.07893 5.26513 5.29427 5.44003 5.47613 5.50896 5.53326 5.57953 5.59747 5.78956 5.88841 5.95960 6.10673 6.16356 6.71574 6.72200 6.86958 7.28947 7.45179 8.86698 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021808 B = 0.002935 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.631185 B = 9537.921347 C = 9888.977032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.005 1.005 5 C -0.550 4.550 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.282 1.282 11 H -0.283 1.283 12 H -0.260 1.260 13 N -0.695 5.695 14 C 0.494 3.506 15 O -0.569 6.569 16 C 0.100 3.900 17 H 0.125 0.875 18 C -0.148 4.148 19 N -0.499 5.499 20 C 0.124 3.876 21 C -0.207 4.207 22 C -0.002 4.002 23 C -0.126 4.126 24 C -0.077 4.077 25 C -0.139 4.139 26 C -0.070 4.070 27 C -0.186 4.186 28 C 0.533 3.467 29 O -0.572 6.572 30 H 0.022 0.978 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.265 0.735 36 H 0.405 0.595 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.162 0.838 41 H 0.178 0.822 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.155 0.845 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.123 5.870 -13.886 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.013 0.987 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.792 3.208 10 H -0.208 1.208 11 H -0.208 1.208 12 H -0.184 1.184 13 N -0.344 5.344 14 C 0.278 3.722 15 O -0.450 6.450 16 C -0.006 4.006 17 H 0.142 0.858 18 C -0.205 4.205 19 N -0.213 5.213 20 C 0.004 3.996 21 C -0.229 4.229 22 C -0.004 4.004 23 C -0.144 4.144 24 C -0.095 4.095 25 C -0.157 4.157 26 C -0.089 4.089 27 C -0.190 4.190 28 C 0.330 3.670 29 O -0.455 6.455 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.240 0.760 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.179 0.821 41 H 0.196 0.804 42 H 0.180 0.820 43 H 0.182 0.818 44 H 0.173 0.827 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.028 6.150 -13.189 22.399 hybrid contribution 1.735 0.024 0.487 1.802 sum -15.294 6.174 -12.703 20.818 Atomic orbital electron populations 1.21669 0.96625 0.99319 1.00296 1.21758 0.94075 0.98535 1.01484 1.18395 0.93527 0.89451 0.80880 0.98704 1.21584 0.91549 1.38914 1.06761 0.91152 1.25718 1.03092 0.94401 0.95063 1.70036 1.36974 1.38306 1.09803 0.85425 0.79426 0.77331 0.78649 1.20828 1.20813 1.18380 1.46197 1.14889 1.55436 1.17854 1.20894 0.82741 0.79019 0.89511 1.90700 1.52300 1.60570 1.41383 1.21482 0.84437 0.99819 0.94906 0.85775 1.22134 1.05540 0.97384 0.95471 1.44800 1.08296 1.07258 1.60903 1.21580 0.87211 0.96109 0.94657 1.21786 0.95860 0.94475 1.10778 1.19437 0.93694 0.93005 0.94290 1.21274 0.95012 0.97007 1.01134 1.21520 1.00752 0.92881 0.94314 1.21242 0.91458 1.01889 1.01066 1.20923 0.98602 0.93005 0.96342 1.19962 0.91465 0.96170 1.11358 1.18676 0.90216 0.81104 0.76974 1.90789 1.44854 1.57992 1.51859 0.95881 0.93209 0.93347 0.93577 0.91210 0.92598 0.75983 0.90378 0.89533 0.88213 0.82059 0.80439 0.81974 0.81764 0.82736 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 8.52 71.98 0.61 -4.41 16 2 C -0.12 -5.57 5.45 30.60 0.17 -5.40 16 3 C 0.28 13.93 2.24 44.25 0.10 14.03 16 4 H 0.00 -0.30 7.58 -2.39 -0.02 -0.31 16 5 C -0.55 -28.62 8.73 25.60 0.22 -28.40 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.94 5.29 84.65 0.45 1.39 16 8 N -0.91 -51.60 11.29 21.45 0.24 -51.36 16 9 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 13 N -0.69 -27.33 4.91 -446.11 -2.19 -29.52 16 14 C 0.49 18.74 5.50 87.66 0.48 19.22 16 15 O -0.57 -25.69 12.27 -3.02 -0.04 -25.73 16 16 C 0.10 3.00 2.99 44.25 0.13 3.14 16 17 H 0.12 3.97 6.81 -2.38 -0.02 3.95 16 18 C -0.15 -3.02 9.04 71.98 0.65 -2.37 16 19 N -0.50 -15.50 2.37 -626.00 -1.48 -16.98 16 20 C 0.12 3.27 8.02 83.06 0.67 3.94 16 21 C -0.21 -4.61 10.03 23.48 0.24 -4.38 16 22 C 0.00 -0.06 5.89 -20.06 -0.12 -0.18 16 23 C -0.13 -2.10 9.83 22.24 0.22 -1.88 16 24 C -0.08 -1.08 9.96 22.07 0.22 -0.86 16 25 C -0.14 -2.40 9.96 22.08 0.22 -2.18 16 26 C -0.07 -1.75 9.62 22.22 0.21 -1.54 16 27 C -0.19 -5.48 5.90 -20.00 -0.12 -5.59 16 28 C 0.53 18.49 7.62 86.45 0.66 19.15 16 29 O -0.57 -22.87 15.80 -4.62 -0.07 -22.95 16 30 H 0.02 1.04 7.85 -2.39 -0.02 1.03 16 31 H 0.05 1.88 5.65 -2.38 -0.01 1.87 16 32 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 3.71 5.95 -2.38 -0.01 3.70 16 35 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.40 13.40 7.96 -92.71 -0.74 12.66 16 37 H 0.08 1.47 7.13 -2.39 -0.02 1.45 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.10 1.75 7.56 -2.39 -0.02 1.74 16 40 H 0.16 3.87 7.03 -2.91 -0.02 3.85 16 41 H 0.18 2.67 8.06 -2.91 -0.02 2.64 16 42 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 44 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 45 H 0.12 3.22 7.80 -2.91 -0.02 3.19 16 Total: -1.00 -73.38 366.10 3.78 -69.60 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.28 Total: 29.35 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.01 Total: 3.66 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -3.43 Total: -97.86 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -0.11 Total: -48.67 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -73.38 3.78 -69.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279311722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.762 kcal (2) G-P(sol) polarization free energy of solvation -73.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds