Wall clock time and date at job start Tue Mar 31 2020 16:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47175 * 304.44469 * 3 2 1 5 5 C 1.36801 * 119.99603 * 83.52021 * 4 3 2 6 6 H 1.08000 * 119.99685 * 168.14526 * 5 4 3 7 7 C 1.39096 * 120.00078 * 348.14667 * 5 4 3 8 8 N 1.31323 * 120.00267 * 2.81287 * 7 5 4 9 9 Si 1.86801 * 120.00107 * 182.81635 * 7 5 4 10 10 H 1.48497 * 109.47075 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47511 * 119.99878 * 9 7 5 12 12 H 1.48501 * 109.46988 * 239.99844 * 9 7 5 13 13 C 1.34776 * 120.00312 * 263.52028 * 4 3 2 14 14 O 1.21570 * 119.99826 * 182.49860 * 13 4 3 15 15 C 1.48000 * 120.00132 * 2.49728 * 13 4 3 16 16 C 1.40059 * 120.89833 * 222.03147 * 15 13 4 17 17 C 1.37938 * 119.12283 * 179.97438 * 16 15 13 18 18 N 1.31936 * 120.98666 * 359.97438 * 17 16 15 19 19 C 1.32192 * 121.98726 * 0.02562 * 18 17 16 20 20 O 1.35690 * 119.62008 * 180.02562 * 19 18 17 21 21 C 1.42901 * 116.99749 * 359.97438 * 20 19 18 22 22 C 1.52994 * 109.47278 * 150.00601 * 21 20 19 23 23 C 1.52997 * 109.47248 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.46832 * 299.99319 * 23 22 21 25 25 C 1.52997 * 109.47107 * 60.00562 * 24 23 22 26 26 C 1.53002 * 109.47178 * 270.00596 * 21 20 19 27 27 C 1.38847 * 120.76481 * 0.27114 * 19 18 17 28 28 H 4.40637 * 5.51363 * 180.02562 * 4 1 2 29 29 H 1.09009 * 109.46231 * 184.45298 * 3 2 1 30 30 H 1.08996 * 109.47427 * 64.45290 * 3 2 1 31 31 H 0.96997 * 120.00812 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.43886 * 359.97438 * 16 15 13 33 33 H 1.08000 * 119.50646 * 179.97438 * 17 16 15 34 34 H 1.08997 * 109.47098 * 29.99989 * 21 20 19 35 35 H 1.08997 * 109.47557 * 59.99668 * 22 21 20 36 36 H 1.08999 * 109.46951 * 299.99733 * 22 21 20 37 37 H 1.09001 * 109.47197 * 179.97438 * 23 22 21 38 38 H 1.08992 * 109.47677 * 59.99610 * 23 22 21 39 39 H 1.09006 * 109.47473 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.47512 * 300.00138 * 24 23 22 41 41 H 1.08997 * 109.47530 * 59.99787 * 25 24 23 42 42 H 1.08999 * 109.47410 * 179.97438 * 25 24 23 43 43 H 1.09009 * 109.46723 * 300.00021 * 26 21 20 44 44 H 1.09004 * 109.47688 * 59.99606 * 26 21 20 45 45 H 1.08005 * 120.53390 * 179.72650 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7803 1.1390 5 6 3.2372 -2.1410 1.0417 6 1 3.7707 -2.6978 1.7979 7 6 2.6545 -2.8074 -0.0312 8 7 2.0536 -2.1260 -0.9795 9 14 2.7266 -4.6718 -0.1233 10 1 3.4547 -5.1980 1.0591 11 1 1.3467 -5.2203 -0.1400 12 1 3.4362 -5.0791 -1.3626 13 6 3.4833 -0.1583 2.2827 14 8 3.9316 -0.8013 3.2120 15 6 3.3203 1.3074 2.4073 16 6 4.3093 2.0920 3.0141 17 6 4.1197 3.4549 3.1103 18 7 3.0258 4.0234 2.6403 19 6 2.0665 3.3230 2.0602 20 8 0.9616 3.9573 1.5933 21 6 0.9066 5.3750 1.7642 22 6 0.0913 5.9946 0.6274 23 6 0.0331 7.5125 0.8101 24 6 -0.6294 7.8398 2.1498 25 6 0.1858 7.2203 3.2867 26 6 0.2439 5.7019 3.1040 27 6 2.1740 1.9450 1.9276 28 1 -1.0498 -0.0003 0.0001 29 1 3.0088 1.0255 0.0798 30 1 3.0096 -0.4423 -0.9271 31 1 1.6469 -2.5906 -1.7275 32 1 5.2083 1.6359 3.4015 33 1 4.8781 4.0657 3.5773 34 1 1.9176 5.7821 1.7501 35 1 -0.9196 5.5874 0.6415 36 1 0.5635 5.7617 -0.3270 37 1 -0.5474 7.9539 0.0000 38 1 1.0441 7.9193 0.7957 39 1 -0.6706 8.9212 2.2803 40 1 -1.6406 7.4330 2.1642 41 1 1.1969 7.6271 3.2724 42 1 -0.2858 7.4538 4.2412 43 1 -0.7671 5.2947 3.1181 44 1 0.8247 5.2605 3.9140 45 1 1.3859 1.3759 1.4570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281553388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:38 Heat of formation + Delta-G solvation = 30.226455 kcal Electronic energy + Delta-G solvation = -28058.356025 eV Core-core repulsion = 24236.406450 eV Total energy + Delta-G solvation = -3821.949576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.58406 -39.21968 -38.14672 -36.59223 -35.38669 -32.75912 -31.55429 -31.35293 -30.98348 -30.73317 -29.21170 -26.64070 -25.42692 -23.71090 -23.16759 -22.65528 -22.14586 -19.99602 -19.83802 -18.04678 -17.84762 -16.66294 -16.59201 -16.07778 -15.59687 -15.54488 -15.20304 -14.67716 -14.46957 -14.29738 -14.11384 -13.98514 -13.64838 -13.50699 -13.05747 -12.83454 -12.65994 -12.52771 -12.37714 -12.27023 -11.63922 -11.50345 -11.29174 -11.28377 -11.14292 -11.13522 -10.84018 -10.59446 -10.47796 -10.42878 -10.12460 -9.71107 -9.59155 -9.32538 -9.20385 -8.77515 -8.60148 -8.18687 -8.07870 -6.39993 -4.00344 1.31059 1.52276 3.05971 3.14726 3.18537 3.24742 3.61761 3.74101 4.00050 4.08755 4.22167 4.48197 4.54902 4.58300 4.69911 4.78706 4.97869 5.04356 5.05376 5.23641 5.29843 5.31895 5.37883 5.42106 5.45601 5.49498 5.55290 5.62455 5.71158 5.83383 5.91229 5.92871 5.97342 6.03447 6.07518 6.14914 6.20044 6.24766 6.30950 6.63703 6.72785 6.93971 7.08587 7.40651 7.54522 7.84789 8.11293 8.28409 8.77318 8.96071 9.16960 9.71211 10.49789 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.003253 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.854129 B = 8604.127837 C = 9651.470485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.097 4.097 3 C 0.218 3.782 4 N -0.421 5.421 5 C -0.300 4.300 6 H 0.111 0.889 7 C 0.030 3.970 8 N -0.867 5.867 9 Si 0.936 3.064 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.471 3.529 14 O -0.578 6.578 15 C -0.017 4.017 16 C -0.173 4.173 17 C 0.127 3.873 18 N -0.542 5.542 19 C 0.316 3.684 20 O -0.299 6.299 21 C 0.092 3.908 22 C -0.118 4.118 23 C -0.114 4.114 24 C -0.123 4.123 25 C -0.114 4.114 26 C -0.135 4.135 27 C -0.178 4.178 28 H 0.200 0.800 29 H 0.059 0.941 30 H 0.136 0.864 31 H 0.271 0.729 32 H 0.140 0.860 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 17.366 1.180 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.099 4.099 3 C 0.095 3.905 4 N -0.137 5.137 5 C -0.428 4.428 6 H 0.129 0.871 7 C -0.173 4.173 8 N -0.507 5.507 9 Si 0.762 3.238 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.205 1.205 13 C 0.260 3.740 14 O -0.463 6.463 15 C -0.028 4.028 16 C -0.194 4.194 17 C -0.028 4.028 18 N -0.267 5.267 19 C 0.138 3.862 20 O -0.207 6.207 21 C 0.035 3.965 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.160 4.160 25 C -0.152 4.152 26 C -0.173 4.173 27 C -0.199 4.199 28 H 0.217 0.783 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.175 0.825 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.320 17.737 1.358 18.096 hybrid contribution -0.245 -1.655 -0.204 1.685 sum -3.565 16.083 1.154 16.513 Atomic orbital electron populations 1.24285 0.95398 1.05924 1.03240 1.22932 0.94184 0.95392 0.97398 1.18953 0.84510 0.93517 0.93512 1.43686 1.53070 1.07115 1.09779 1.19923 1.32695 0.80662 1.09509 0.87118 1.25416 0.95347 1.01201 0.95378 1.69913 1.34851 1.35230 1.10659 0.85690 0.78206 0.81377 0.78493 1.19058 1.20500 1.20490 1.17724 0.86856 0.85492 0.83932 1.90634 1.51041 1.65888 1.38780 1.20498 0.93059 0.95383 0.93898 1.22026 1.00776 0.94277 1.02357 1.22202 0.93162 0.92290 0.95173 1.67038 1.03405 1.40976 1.15283 1.19594 0.86089 0.88998 0.91554 1.86315 1.36384 1.22668 1.75325 1.22284 1.00831 0.78346 0.95007 1.21626 1.01009 0.95093 0.97860 1.21479 1.01293 0.94832 0.97551 1.21592 0.99476 1.00271 0.94673 1.21473 1.00615 0.94697 0.98379 1.21962 1.01518 0.96352 0.97439 1.21918 1.00960 0.92232 1.04813 0.78328 0.92344 0.84646 0.91719 0.84204 0.82495 0.89368 0.90980 0.91097 0.91359 0.91707 0.91915 0.91818 0.91691 0.91762 0.91472 0.91338 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.63 18.88 29.55 0.56 -5.08 16 2 C -0.10 -2.20 8.61 -37.12 -0.32 -2.52 16 3 C 0.22 4.94 4.76 -6.83 -0.03 4.91 16 4 N -0.42 -10.64 2.60 -118.97 -0.31 -10.95 16 5 C -0.30 -8.06 9.47 -15.02 -0.14 -8.20 16 6 H 0.11 3.10 7.21 -52.49 -0.38 2.72 16 7 C 0.03 0.75 5.38 -17.45 -0.09 0.66 16 8 N -0.87 -21.59 8.05 55.50 0.45 -21.14 16 9 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.47 11.70 7.30 -12.26 -0.09 11.61 16 14 O -0.58 -16.05 16.58 5.30 0.09 -15.96 16 15 C -0.02 -0.36 5.00 -104.68 -0.52 -0.88 16 16 C -0.17 -3.00 9.78 -39.01 -0.38 -3.38 16 17 C 0.13 1.88 11.16 -17.62 -0.20 1.68 16 18 N -0.54 -8.75 8.61 -13.39 -0.12 -8.86 16 19 C 0.32 5.59 7.45 -17.17 -0.13 5.46 16 20 O -0.30 -4.91 9.76 -18.77 -0.18 -5.10 16 21 C 0.09 1.18 2.38 -26.73 -0.06 1.12 16 22 C -0.12 -1.26 5.57 -26.74 -0.15 -1.40 16 23 C -0.11 -0.94 5.92 -26.73 -0.16 -1.10 16 24 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 25 C -0.11 -1.02 5.92 -26.71 -0.16 -1.18 16 26 C -0.13 -1.56 5.55 -26.70 -0.15 -1.71 16 27 C -0.18 -3.51 7.63 -38.82 -0.30 -3.81 16 28 H 0.20 3.42 7.80 -54.10 -0.42 3.00 16 29 H 0.06 1.21 5.66 -51.92 -0.29 0.92 16 30 H 0.14 3.23 6.06 -51.93 -0.31 2.92 16 31 H 0.27 6.46 8.31 -40.82 -0.34 6.13 16 32 H 0.14 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.09 1.18 6.98 -51.93 -0.36 0.82 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.16 3.30 4.05 -52.48 -0.21 3.09 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -29.81 366.77 -8.24 -38.05 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.19 Total: 8.31 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -2.48 Total: -4.93 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.02 Total: -40.95 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.10 Total: -21.06 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.81 -8.24 -38.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281553388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.277 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds