Wall clock time and date at job start Tue Mar 31 2020 16:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47175 * 304.44469 * 3 2 1 5 5 C 1.36801 * 119.99603 * 83.52021 * 4 3 2 6 6 H 1.08000 * 119.99685 * 168.14526 * 5 4 3 7 7 C 1.39096 * 120.00078 * 348.14667 * 5 4 3 8 8 N 1.31323 * 120.00267 * 2.81287 * 7 5 4 9 9 Si 1.86801 * 120.00107 * 182.81635 * 7 5 4 10 10 H 1.48497 * 109.47075 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47511 * 119.99878 * 9 7 5 12 12 H 1.48501 * 109.46988 * 239.99844 * 9 7 5 13 13 C 1.34776 * 120.00312 * 263.52028 * 4 3 2 14 14 O 1.21570 * 119.99826 * 182.49860 * 13 4 3 15 15 C 1.48000 * 120.00132 * 2.49728 * 13 4 3 16 16 C 1.40059 * 120.89833 * 222.03147 * 15 13 4 17 17 C 1.37938 * 119.12283 * 179.97438 * 16 15 13 18 18 N 1.31936 * 120.98666 * 359.97438 * 17 16 15 19 19 C 1.32192 * 121.98726 * 0.02562 * 18 17 16 20 20 O 1.35690 * 119.62008 * 180.02562 * 19 18 17 21 21 C 1.42901 * 116.99749 * 359.97438 * 20 19 18 22 22 C 1.52994 * 109.47278 * 150.00601 * 21 20 19 23 23 C 1.52997 * 109.47248 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.46832 * 299.99319 * 23 22 21 25 25 C 1.52997 * 109.47107 * 60.00562 * 24 23 22 26 26 C 1.53002 * 109.47178 * 270.00596 * 21 20 19 27 27 C 1.38847 * 120.76481 * 0.27114 * 19 18 17 28 28 H 4.40637 * 5.51363 * 180.02562 * 4 1 2 29 29 H 1.09009 * 109.46231 * 184.45298 * 3 2 1 30 30 H 1.08996 * 109.47427 * 64.45290 * 3 2 1 31 31 H 0.96997 * 120.00812 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.43886 * 359.97438 * 16 15 13 33 33 H 1.08000 * 119.50646 * 179.97438 * 17 16 15 34 34 H 1.08997 * 109.47098 * 29.99989 * 21 20 19 35 35 H 1.08997 * 109.47557 * 59.99668 * 22 21 20 36 36 H 1.08999 * 109.46951 * 299.99733 * 22 21 20 37 37 H 1.09001 * 109.47197 * 179.97438 * 23 22 21 38 38 H 1.08992 * 109.47677 * 59.99610 * 23 22 21 39 39 H 1.09006 * 109.47473 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.47512 * 300.00138 * 24 23 22 41 41 H 1.08997 * 109.47530 * 59.99787 * 25 24 23 42 42 H 1.08999 * 109.47410 * 179.97438 * 25 24 23 43 43 H 1.09009 * 109.46723 * 300.00021 * 26 21 20 44 44 H 1.09004 * 109.47688 * 59.99606 * 26 21 20 45 45 H 1.08005 * 120.53390 * 179.72650 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7803 1.1390 5 6 3.2372 -2.1410 1.0417 6 1 3.7707 -2.6978 1.7979 7 6 2.6545 -2.8074 -0.0312 8 7 2.0536 -2.1260 -0.9795 9 14 2.7266 -4.6718 -0.1233 10 1 3.4547 -5.1980 1.0591 11 1 1.3467 -5.2203 -0.1400 12 1 3.4362 -5.0791 -1.3626 13 6 3.4833 -0.1583 2.2827 14 8 3.9316 -0.8013 3.2120 15 6 3.3203 1.3074 2.4073 16 6 4.3093 2.0920 3.0141 17 6 4.1197 3.4549 3.1103 18 7 3.0258 4.0234 2.6403 19 6 2.0665 3.3230 2.0602 20 8 0.9616 3.9573 1.5933 21 6 0.9066 5.3750 1.7642 22 6 0.0913 5.9946 0.6274 23 6 0.0331 7.5125 0.8101 24 6 -0.6294 7.8398 2.1498 25 6 0.1858 7.2203 3.2867 26 6 0.2439 5.7019 3.1040 27 6 2.1740 1.9450 1.9276 28 1 -1.0498 -0.0003 0.0001 29 1 3.0088 1.0255 0.0798 30 1 3.0096 -0.4423 -0.9271 31 1 1.6469 -2.5906 -1.7275 32 1 5.2083 1.6359 3.4015 33 1 4.8781 4.0657 3.5773 34 1 1.9176 5.7821 1.7501 35 1 -0.9196 5.5874 0.6415 36 1 0.5635 5.7617 -0.3270 37 1 -0.5474 7.9539 0.0000 38 1 1.0441 7.9193 0.7957 39 1 -0.6706 8.9212 2.2803 40 1 -1.6406 7.4330 2.1642 41 1 1.1969 7.6271 3.2724 42 1 -0.2858 7.4538 4.2412 43 1 -0.7671 5.2947 3.1181 44 1 0.8247 5.2605 3.9140 45 1 1.3859 1.3759 1.4570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281553388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:37 Heat of formation + Delta-G solvation = 13.612027 kcal Electronic energy + Delta-G solvation = -28059.076481 eV Core-core repulsion = 24236.406450 eV Total energy + Delta-G solvation = -3822.670031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.97264 -40.70179 -39.50510 -37.69317 -37.29583 -34.48585 -33.29002 -33.09579 -31.95771 -31.68552 -30.30243 -28.48034 -27.20780 -25.22049 -24.43498 -23.51739 -23.27601 -21.41937 -20.77407 -19.88161 -19.34170 -18.42114 -17.93622 -17.78546 -17.06813 -16.69022 -16.41605 -16.30680 -16.02761 -15.74056 -15.19498 -15.14813 -14.99072 -14.68921 -14.47178 -14.21524 -14.12821 -13.94943 -13.77568 -13.23590 -13.15382 -12.97919 -12.82534 -12.60099 -12.54051 -12.16196 -12.07255 -12.02144 -11.55361 -11.51814 -11.33045 -11.21769 -10.98629 -10.91780 -10.86230 -10.49987 -10.41212 -10.03273 -9.49773 -8.32051 -6.03383 -0.18835 0.15143 1.33539 1.40059 1.53228 1.79278 1.97129 2.00694 2.26695 2.33016 2.73089 2.97745 3.04349 3.29206 3.70215 3.75248 3.76828 3.92624 3.97091 4.03070 4.07493 4.16449 4.27171 4.31346 4.43649 4.51707 4.52471 4.54883 4.65900 4.68373 4.79662 4.95273 5.03210 5.10189 5.10329 5.20334 5.20670 5.22067 5.30793 5.36492 5.36918 5.38188 5.40237 5.53653 5.89756 6.28434 6.32869 6.76858 6.98686 7.05472 7.23557 7.77686 8.55107 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.003253 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.854129 B = 8604.127837 C = 9651.470485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.134 4.134 3 C 0.227 3.773 4 N -0.430 5.430 5 C -0.343 4.343 6 H 0.085 0.915 7 C 0.004 3.996 8 N -0.871 5.871 9 Si 0.997 3.003 10 H -0.274 1.274 11 H -0.274 1.274 12 H -0.264 1.264 13 C 0.461 3.539 14 O -0.621 6.621 15 C -0.036 4.036 16 C -0.176 4.176 17 C 0.150 3.850 18 N -0.533 5.533 19 C 0.320 3.680 20 O -0.312 6.312 21 C 0.085 3.915 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.121 4.121 25 C -0.110 4.110 26 C -0.132 4.132 27 C -0.193 4.193 28 H 0.234 0.766 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.276 0.724 32 H 0.149 0.851 33 H 0.209 0.791 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 19.806 0.893 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.136 4.136 3 C 0.105 3.895 4 N -0.145 5.145 5 C -0.470 4.470 6 H 0.103 0.897 7 C -0.199 4.199 8 N -0.509 5.509 9 Si 0.820 3.180 10 H -0.199 1.199 11 H -0.200 1.200 12 H -0.189 1.189 13 C 0.252 3.748 14 O -0.510 6.510 15 C -0.047 4.047 16 C -0.197 4.197 17 C -0.006 4.006 18 N -0.257 5.257 19 C 0.141 3.859 20 O -0.220 6.220 21 C 0.030 3.970 22 C -0.154 4.154 23 C -0.147 4.147 24 C -0.158 4.158 25 C -0.147 4.147 26 C -0.170 4.170 27 C -0.214 4.214 28 H 0.250 0.750 29 H 0.091 0.909 30 H 0.138 0.862 31 H 0.087 0.913 32 H 0.166 0.834 33 H 0.226 0.774 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.067 20.218 1.027 20.648 hybrid contribution -0.059 -2.299 -0.107 2.302 sum -4.126 17.919 0.920 18.411 Atomic orbital electron populations 1.25122 0.96311 1.04248 1.01531 1.23090 0.94658 0.96911 0.98958 1.18817 0.85093 0.93677 0.91891 1.43847 1.53017 1.06996 1.10592 1.19840 1.35070 0.81788 1.10344 0.89683 1.26114 0.94337 1.04984 0.94473 1.70030 1.33953 1.36444 1.10438 0.84812 0.78240 0.76392 0.78524 1.19910 1.19951 1.18885 1.18387 0.85862 0.87333 0.83248 1.90573 1.52829 1.67501 1.40072 1.20228 0.94949 0.93189 0.96354 1.22233 1.00355 0.95265 1.01872 1.22956 0.93160 0.91536 0.92905 1.67232 1.03354 1.40441 1.14719 1.19529 0.86707 0.88407 0.91216 1.86305 1.35869 1.24772 1.75074 1.22613 1.01306 0.76403 0.96706 1.21667 1.00250 0.96807 0.96678 1.21489 1.02013 0.92721 0.98475 1.21598 0.99093 1.01357 0.93748 1.21470 1.01275 0.92464 0.99513 1.21939 1.00640 0.98404 0.95984 1.21703 1.00506 0.93254 1.05946 0.74979 0.90913 0.86184 0.91263 0.83351 0.77410 0.89653 0.91264 0.91577 0.89766 0.91241 0.89992 0.91804 0.91344 0.90712 0.91965 0.93056 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.50 18.88 74.32 1.40 -9.09 16 2 C -0.13 -6.18 8.61 31.12 0.27 -5.92 16 3 C 0.23 10.72 4.76 84.57 0.40 11.12 16 4 N -0.43 -22.82 2.60 -648.57 -1.68 -24.50 16 5 C -0.34 -19.32 9.47 84.12 0.80 -18.52 16 6 H 0.09 5.10 7.21 -2.91 -0.02 5.08 16 7 C 0.00 0.20 5.38 84.98 0.46 0.65 16 8 N -0.87 -43.79 8.05 21.69 0.17 -43.62 16 9 Si 1.00 41.66 29.55 68.60 2.03 43.69 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 13 C 0.46 24.10 7.30 86.83 0.63 24.74 16 14 O -0.62 -36.45 16.58 -3.93 -0.07 -36.51 16 15 C -0.04 -1.54 5.00 -19.90 -0.10 -1.64 16 16 C -0.18 -5.98 9.78 22.64 0.22 -5.76 16 17 C 0.15 4.04 11.16 84.61 0.94 4.99 16 18 N -0.53 -16.16 8.61 -309.16 -2.66 -18.82 16 19 C 0.32 11.14 7.45 84.78 0.63 11.77 16 20 O -0.31 -10.12 9.76 -90.09 -0.88 -11.00 16 21 C 0.09 2.09 2.38 30.59 0.07 2.16 16 22 C -0.12 -2.29 5.57 30.59 0.17 -2.12 16 23 C -0.11 -1.51 5.92 30.59 0.18 -1.33 16 24 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 25 C -0.11 -1.69 5.92 30.61 0.18 -1.51 16 26 C -0.13 -2.87 5.55 30.61 0.17 -2.70 16 27 C -0.19 -7.74 7.63 22.76 0.17 -7.57 16 28 H 0.23 7.55 7.80 -4.43 -0.03 7.52 16 29 H 0.07 3.14 5.66 -2.38 -0.01 3.13 16 30 H 0.12 5.96 6.06 -2.39 -0.01 5.94 16 31 H 0.28 13.07 8.31 -92.71 -0.77 12.30 16 32 H 0.15 4.74 8.06 -2.91 -0.02 4.72 16 33 H 0.21 3.50 8.06 -2.91 -0.02 3.47 16 34 H 0.09 2.13 6.98 -2.39 -0.02 2.11 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.14 6.11 4.05 -2.91 -0.01 6.10 16 Total: -1.00 -67.62 366.77 4.70 -62.93 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 1.00 Total: 29.90 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 6.79 Total: -2.07 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -4.17 Total: -86.93 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -0.94 Total: -47.51 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -67.62 4.70 -62.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281553388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.538 kcal (2) G-P(sol) polarization free energy of solvation -67.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds