Wall clock time and date at job start Tue Mar 31 2020 15:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46987 * 2 1 4 4 H 1.08997 * 109.47146 * 306.91695 * 3 2 1 5 5 C 1.50704 * 109.46917 * 186.92131 * 3 2 1 6 6 H 1.08008 * 119.99916 * 239.99687 * 5 3 2 7 7 C 1.37880 * 120.00430 * 59.99402 * 5 3 2 8 8 N 1.31518 * 119.99496 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00324 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46999 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47126 * 120.00161 * 9 7 5 12 12 H 1.48498 * 109.47294 * 240.00476 * 9 7 5 13 13 N 1.46502 * 109.47635 * 66.91971 * 3 2 1 14 14 C 1.34779 * 119.99640 * 270.51905 * 13 3 2 15 15 O 1.21621 * 120.00059 * 5.79850 * 14 13 3 16 16 C 1.47281 * 119.99823 * 185.79765 * 14 13 3 17 17 C 1.37214 * 128.57630 * 99.00084 * 16 14 13 18 18 C 1.50690 * 126.72111 * 0.02562 * 17 16 14 19 19 O 1.33496 * 106.55208 * 180.02562 * 17 16 14 20 20 N 1.20654 * 113.39636 * 0.02562 * 19 17 16 21 21 C 1.30864 * 112.09730 * 359.97438 * 20 19 17 22 22 C 1.48327 * 127.44248 * 179.73833 * 21 20 19 23 23 C 1.39391 * 120.12478 * 186.43026 * 22 21 20 24 24 C 1.37989 * 119.87368 * 180.02562 * 23 22 21 25 25 C 1.38346 * 120.12842 * 0.02562 * 24 23 22 26 26 C 1.38313 * 120.24748 * 359.97301 * 25 24 23 27 27 C 1.38028 * 120.12203 * 359.76696 * 26 25 24 28 28 C 1.50706 * 120.06271 * 180.25453 * 27 26 25 29 29 H 1.08996 * 109.47306 * 186.89020 * 1 2 3 30 30 H 1.08999 * 109.47069 * 306.89268 * 1 2 3 31 31 H 1.09003 * 109.46574 * 66.88866 * 1 2 3 32 32 H 1.08994 * 109.47437 * 239.99661 * 2 1 3 33 33 H 1.09004 * 109.47110 * 119.99397 * 2 1 3 34 34 H 0.96993 * 119.99407 * 180.02562 * 8 7 5 35 35 H 0.96991 * 119.99705 * 90.51783 * 13 3 2 36 36 H 1.09001 * 109.46827 * 179.97438 * 18 17 16 37 37 H 1.09003 * 109.47371 * 299.99095 * 18 17 16 38 38 H 1.08994 * 109.47774 * 59.99756 * 18 17 16 39 39 H 1.07999 * 120.06327 * 0.02638 * 23 22 21 40 40 H 1.08000 * 119.93303 * 179.97438 * 24 23 22 41 41 H 1.08001 * 119.87718 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.93602 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.47131 * 270.25694 * 28 27 26 44 44 H 1.08999 * 109.46674 * 30.25394 * 28 27 26 45 45 H 1.08998 * 109.46858 * 150.26002 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5791 1.9908 -0.8216 5 6 3.5372 1.4460 -0.1712 6 1 4.1669 1.8820 0.5903 7 6 4.1034 0.8924 -1.3000 8 7 3.3367 0.3619 -2.2275 9 14 5.9593 0.8960 -1.5119 10 1 6.5905 1.5471 -0.3359 11 1 6.4474 -0.5018 -1.6244 12 1 6.3155 1.6454 -2.7434 13 7 1.6923 2.0835 1.2706 14 6 0.5154 2.7273 1.4007 15 8 -0.3024 2.6871 0.5014 16 6 0.2196 3.4795 2.6319 17 6 0.3263 4.8289 2.8567 18 6 0.7809 5.8734 1.8702 19 8 -0.0516 5.0351 4.1203 20 7 -0.3697 4.0238 4.6963 21 6 -0.2643 2.9674 3.9311 22 6 -0.5602 1.5594 4.2917 23 6 -0.2675 0.5317 3.3967 24 6 -0.5455 -0.7763 3.7374 25 6 -1.1140 -1.0685 4.9643 26 6 -1.4066 -0.0527 5.8563 27 6 -1.1280 1.2587 5.5283 28 6 -1.4420 2.3639 6.5036 29 1 -0.3634 -1.0202 0.1233 30 1 -0.3633 0.6169 0.8219 31 1 -0.3632 0.4034 -0.9452 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.7350 -0.0279 -3.0214 35 1 2.3091 2.0446 2.0182 36 1 0.7584 6.8548 2.3441 37 1 1.7972 5.6493 1.5462 38 1 0.1156 5.8720 1.0069 39 1 0.1760 0.7586 2.4385 40 1 -0.3194 -1.5733 3.0445 41 1 -1.3295 -2.0937 5.2269 42 1 -1.8500 -0.2866 6.8129 43 1 -2.4564 2.7236 6.3308 44 1 -1.3597 1.9840 7.5219 45 1 -0.7371 3.1834 6.3633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281737640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:22 Heat of formation + Delta-G solvation = 44.741453 kcal Electronic energy + Delta-G solvation = -28765.398260 eV Core-core repulsion = 24944.078101 eV Total energy + Delta-G solvation = -3821.320158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.72214 -39.54197 -38.90819 -35.23312 -34.28269 -33.60971 -32.55051 -32.31790 -31.04030 -30.37034 -28.07283 -27.24141 -26.77977 -24.75321 -23.27288 -22.73592 -21.77468 -20.54401 -19.73620 -19.49106 -17.92816 -17.65603 -16.89244 -16.26600 -15.85821 -15.44024 -15.11970 -15.07357 -14.50715 -14.27729 -13.89279 -13.64242 -13.36660 -13.27336 -13.21625 -13.05308 -12.82012 -12.70318 -12.22550 -12.17299 -11.88535 -11.57521 -11.36702 -11.33448 -11.08957 -11.03634 -10.92216 -10.70721 -10.62687 -10.37030 -10.25655 -9.69584 -9.44262 -9.24062 -9.10347 -8.75131 -8.55201 -8.43427 -7.96880 -6.18667 -4.28331 0.81077 1.39520 1.46073 2.37602 2.91255 3.01190 3.19837 3.28568 3.30893 3.77886 3.84573 4.15269 4.30925 4.36039 4.83886 4.88252 5.01358 5.10019 5.13237 5.20961 5.28207 5.32914 5.44201 5.50629 5.61772 5.64402 5.66617 5.75660 5.86003 5.96023 6.01938 6.26919 6.29293 6.39277 6.47407 6.54224 6.56463 6.60404 6.93596 6.97017 7.11927 7.22979 7.30576 7.52384 7.64373 7.82124 8.09565 8.27013 8.49746 8.67622 8.93464 9.39010 10.86508 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.004385 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.133099 B = 6383.360626 C = 7685.213157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.269 3.731 4 H 0.054 0.946 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.696 5.696 14 C 0.581 3.419 15 O -0.530 6.530 16 C -0.233 4.233 17 C 0.016 3.984 18 C -0.078 4.078 19 O 0.092 5.908 20 N -0.350 5.350 21 C 0.094 3.906 22 C -0.032 4.032 23 C -0.092 4.092 24 C -0.121 4.121 25 C -0.103 4.103 26 C -0.129 4.129 27 C -0.057 4.057 28 C -0.129 4.129 29 H 0.026 0.974 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.032 0.968 34 H 0.264 0.736 35 H 0.391 0.609 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.426 3.567 13.582 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C 0.168 3.832 4 H 0.071 0.929 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.344 5.344 14 C 0.364 3.636 15 O -0.407 6.407 16 C -0.241 4.241 17 C -0.047 4.047 18 C -0.135 4.135 19 O 0.030 5.970 20 N -0.057 5.057 21 C -0.065 4.065 22 C -0.033 4.033 23 C -0.111 4.111 24 C -0.139 4.139 25 C -0.121 4.121 26 C -0.147 4.147 27 C -0.058 4.058 28 C -0.186 4.186 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.224 0.776 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.164 0.836 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.332 3.711 13.951 16.191 hybrid contribution 1.404 -0.517 -0.515 1.582 sum -5.927 3.194 13.437 15.029 Atomic orbital electron populations 1.22022 0.98415 0.98470 1.01747 1.21962 0.92587 0.99701 1.02542 1.18911 0.94912 0.89554 0.79816 0.92867 1.21252 0.90680 1.39713 1.05643 0.91963 1.24868 0.98495 0.94710 0.95449 1.69896 1.34849 1.37977 1.09077 0.86409 0.84798 0.77837 0.78180 1.19736 1.20853 1.20854 1.46613 1.17175 1.52889 1.17713 1.16820 0.83156 0.79382 0.84246 1.90815 1.46928 1.62161 1.40841 1.22291 1.11327 0.93873 0.96584 1.24486 0.98403 0.95233 0.86554 1.20479 1.03197 0.94895 0.94947 1.84483 1.61684 1.29572 1.21228 1.73843 1.19424 0.93107 1.19344 1.22966 1.00665 0.93743 0.89088 1.17581 1.02983 0.87768 0.95016 1.21809 0.97329 0.92248 0.99748 1.21117 0.99455 0.96402 0.96956 1.21282 0.97760 0.99217 0.93885 1.20929 1.01894 0.91811 1.00094 1.19973 0.96657 0.95336 0.93842 1.21147 1.03116 0.97520 0.96789 0.95533 0.93175 0.93323 0.87972 0.94881 0.92547 0.77626 0.89529 0.88365 0.88436 0.83641 0.85244 0.85751 0.85742 0.91240 0.91781 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.65 37.16 0.32 -2.85 16 2 C -0.13 -2.96 5.44 -26.73 -0.15 -3.11 16 3 C 0.27 6.39 2.20 -69.08 -0.15 6.24 16 4 H 0.05 1.46 7.52 -51.93 -0.39 1.07 16 5 C -0.53 -13.44 8.74 -34.44 -0.30 -13.74 16 6 H 0.06 1.52 7.78 -52.48 -0.41 1.11 16 7 C 0.07 1.75 5.28 -17.82 -0.09 1.66 16 8 N -0.88 -23.66 11.29 55.43 0.63 -23.03 16 9 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.70 -13.97 4.11 -56.05 -0.23 -14.20 16 14 C 0.58 11.51 4.68 -12.58 -0.06 11.45 16 15 O -0.53 -12.16 14.39 5.26 0.08 -12.08 16 16 C -0.23 -4.01 6.20 -102.69 -0.64 -4.64 16 17 C 0.02 0.23 7.53 -34.69 -0.26 -0.03 16 18 C -0.08 -0.84 10.32 36.00 0.37 -0.47 16 19 O 0.09 1.31 11.05 18.65 0.21 1.51 16 20 N -0.35 -5.39 8.69 34.60 0.30 -5.09 16 21 C 0.09 1.57 7.11 -80.22 -0.57 1.00 16 22 C -0.03 -0.53 5.88 -104.90 -0.62 -1.14 16 23 C -0.09 -1.52 9.40 -39.24 -0.37 -1.89 16 24 C -0.12 -1.72 10.03 -39.63 -0.40 -2.11 16 25 C -0.10 -1.23 10.04 -39.51 -0.40 -1.63 16 26 C -0.13 -1.55 9.69 -39.63 -0.38 -1.93 16 27 C -0.06 -0.79 5.91 -104.28 -0.62 -1.40 16 28 C -0.13 -1.55 9.31 36.01 0.34 -1.22 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 1.05 3.15 -51.93 -0.16 0.89 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.10 2.61 5.92 -51.93 -0.31 2.31 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.39 7.19 8.60 -40.82 -0.35 6.84 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.15 2.64 2.48 -52.49 -0.13 2.51 16 40 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 42 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 45 H 0.10 1.27 5.10 -51.93 -0.26 1.00 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -29.29 364.90 -8.31 -37.61 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.80 Total: 10.69 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -3.97 Total: -15.83 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.70 Total: -42.32 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.28 Total: -10.57 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.29 -8.31 -37.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281737640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.348 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds