Wall clock time and date at job start Tue Mar 31 2020 15:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46987 * 2 1 4 4 H 1.08997 * 109.47146 * 306.91695 * 3 2 1 5 5 C 1.50704 * 109.46917 * 186.92131 * 3 2 1 6 6 H 1.08008 * 119.99916 * 239.99687 * 5 3 2 7 7 C 1.37880 * 120.00430 * 59.99402 * 5 3 2 8 8 N 1.31518 * 119.99496 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00324 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46999 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47126 * 120.00161 * 9 7 5 12 12 H 1.48498 * 109.47294 * 240.00476 * 9 7 5 13 13 N 1.46502 * 109.47635 * 66.91971 * 3 2 1 14 14 C 1.34779 * 119.99640 * 270.51905 * 13 3 2 15 15 O 1.21621 * 120.00059 * 5.79850 * 14 13 3 16 16 C 1.47281 * 119.99823 * 185.79765 * 14 13 3 17 17 C 1.37214 * 128.57630 * 99.00084 * 16 14 13 18 18 C 1.50690 * 126.72111 * 0.02562 * 17 16 14 19 19 O 1.33496 * 106.55208 * 180.02562 * 17 16 14 20 20 N 1.20654 * 113.39636 * 0.02562 * 19 17 16 21 21 C 1.30864 * 112.09730 * 359.97438 * 20 19 17 22 22 C 1.48327 * 127.44248 * 179.73833 * 21 20 19 23 23 C 1.39391 * 120.12478 * 186.43026 * 22 21 20 24 24 C 1.37989 * 119.87368 * 180.02562 * 23 22 21 25 25 C 1.38346 * 120.12842 * 0.02562 * 24 23 22 26 26 C 1.38313 * 120.24748 * 359.97301 * 25 24 23 27 27 C 1.38028 * 120.12203 * 359.76696 * 26 25 24 28 28 C 1.50706 * 120.06271 * 180.25453 * 27 26 25 29 29 H 1.08996 * 109.47306 * 186.89020 * 1 2 3 30 30 H 1.08999 * 109.47069 * 306.89268 * 1 2 3 31 31 H 1.09003 * 109.46574 * 66.88866 * 1 2 3 32 32 H 1.08994 * 109.47437 * 239.99661 * 2 1 3 33 33 H 1.09004 * 109.47110 * 119.99397 * 2 1 3 34 34 H 0.96993 * 119.99407 * 180.02562 * 8 7 5 35 35 H 0.96991 * 119.99705 * 90.51783 * 13 3 2 36 36 H 1.09001 * 109.46827 * 179.97438 * 18 17 16 37 37 H 1.09003 * 109.47371 * 299.99095 * 18 17 16 38 38 H 1.08994 * 109.47774 * 59.99756 * 18 17 16 39 39 H 1.07999 * 120.06327 * 0.02638 * 23 22 21 40 40 H 1.08000 * 119.93303 * 179.97438 * 24 23 22 41 41 H 1.08001 * 119.87718 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.93602 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.47131 * 270.25694 * 28 27 26 44 44 H 1.08999 * 109.46674 * 30.25394 * 28 27 26 45 45 H 1.08998 * 109.46858 * 150.26002 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5791 1.9908 -0.8216 5 6 3.5372 1.4460 -0.1712 6 1 4.1669 1.8820 0.5903 7 6 4.1034 0.8924 -1.3000 8 7 3.3367 0.3619 -2.2275 9 14 5.9593 0.8960 -1.5119 10 1 6.5905 1.5471 -0.3359 11 1 6.4474 -0.5018 -1.6244 12 1 6.3155 1.6454 -2.7434 13 7 1.6923 2.0835 1.2706 14 6 0.5154 2.7273 1.4007 15 8 -0.3024 2.6871 0.5014 16 6 0.2196 3.4795 2.6319 17 6 0.3263 4.8289 2.8567 18 6 0.7809 5.8734 1.8702 19 8 -0.0516 5.0351 4.1203 20 7 -0.3697 4.0238 4.6963 21 6 -0.2643 2.9674 3.9311 22 6 -0.5602 1.5594 4.2917 23 6 -0.2675 0.5317 3.3967 24 6 -0.5455 -0.7763 3.7374 25 6 -1.1140 -1.0685 4.9643 26 6 -1.4066 -0.0527 5.8563 27 6 -1.1280 1.2587 5.5283 28 6 -1.4420 2.3639 6.5036 29 1 -0.3634 -1.0202 0.1233 30 1 -0.3633 0.6169 0.8219 31 1 -0.3632 0.4034 -0.9452 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.7350 -0.0279 -3.0214 35 1 2.3091 2.0446 2.0182 36 1 0.7584 6.8548 2.3441 37 1 1.7972 5.6493 1.5462 38 1 0.1156 5.8720 1.0069 39 1 0.1760 0.7586 2.4385 40 1 -0.3194 -1.5733 3.0445 41 1 -1.3295 -2.0937 5.2269 42 1 -1.8500 -0.2866 6.8129 43 1 -2.4564 2.7236 6.3308 44 1 -1.3597 1.9840 7.5219 45 1 -0.7371 3.1834 6.3633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281737640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:20 Heat of formation + Delta-G solvation = 29.533142 kcal Electronic energy + Delta-G solvation = -28766.057741 eV Core-core repulsion = 24944.078101 eV Total energy + Delta-G solvation = -3821.979640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.92666 -40.93429 -40.20985 -37.04781 -35.47128 -34.80175 -34.26490 -33.48808 -32.77664 -31.48700 -29.38738 -28.76096 -27.87735 -26.16197 -24.88459 -24.10660 -22.83270 -22.08051 -21.31906 -20.84869 -19.45346 -18.86239 -18.20878 -17.69163 -17.39118 -17.07578 -16.57073 -16.19812 -16.09841 -15.62911 -15.05932 -14.87902 -14.70842 -14.56032 -14.46833 -14.14571 -14.08791 -13.84752 -13.67459 -13.48677 -13.19292 -13.15503 -12.96530 -12.89913 -12.71724 -12.43646 -12.17160 -12.13827 -12.04361 -11.81793 -11.73923 -11.56444 -11.10581 -11.07607 -10.52966 -10.44931 -9.79621 -9.74096 -9.50478 -8.16115 -6.32983 -0.29597 0.25511 0.35207 1.20682 1.42738 1.44509 1.47293 1.57315 1.76831 2.33922 2.50846 2.77889 2.88525 3.13718 3.16437 3.80437 3.85360 3.90071 3.92448 4.09593 4.21733 4.35254 4.42936 4.47310 4.51292 4.55795 4.58641 4.70564 4.73592 4.75896 4.79769 4.84331 4.98685 5.05095 5.07028 5.25613 5.31668 5.40084 5.45209 5.47314 5.51218 5.55240 5.58896 5.76494 5.88343 5.96083 6.15437 6.71843 6.79748 7.08686 7.24333 7.42011 8.89159 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.004385 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.133099 B = 6383.360626 C = 7685.213157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.280 3.720 4 H 0.009 0.991 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.690 5.690 14 C 0.594 3.406 15 O -0.568 6.568 16 C -0.272 4.272 17 C 0.039 3.961 18 C -0.080 4.080 19 O 0.102 5.898 20 N -0.350 5.350 21 C 0.088 3.912 22 C -0.059 4.059 23 C -0.119 4.119 24 C -0.133 4.133 25 C -0.093 4.093 26 C -0.123 4.123 27 C -0.065 4.065 28 C -0.126 4.126 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.025 0.975 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.400 0.600 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.135 0.865 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 3.556 16.224 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.027 0.973 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.337 5.337 14 C 0.379 3.621 15 O -0.448 6.448 16 C -0.279 4.279 17 C -0.024 4.024 18 C -0.137 4.137 19 O 0.041 5.959 20 N -0.056 5.056 21 C -0.070 4.070 22 C -0.060 4.060 23 C -0.139 4.139 24 C -0.151 4.151 25 C -0.111 4.111 26 C -0.141 4.141 27 C -0.066 4.066 28 C -0.182 4.182 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.234 0.766 36 H 0.143 0.857 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.153 0.847 41 H 0.178 0.822 42 H 0.178 0.822 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.138 3.715 16.632 18.476 hybrid contribution 1.286 -0.504 -1.286 1.887 sum -5.852 3.211 15.345 16.734 Atomic orbital electron populations 1.21896 0.97230 0.99806 1.00624 1.21778 0.93573 0.98958 1.01523 1.18513 0.94197 0.89559 0.80031 0.97348 1.21545 0.91358 1.39617 1.05946 0.91315 1.25669 1.02781 0.94314 0.95137 1.70036 1.36673 1.38680 1.09539 0.85381 0.79538 0.77779 0.78152 1.18746 1.20585 1.20884 1.46337 1.17743 1.52900 1.16748 1.16974 0.82121 0.78506 0.84542 1.90783 1.47931 1.63460 1.42653 1.22026 1.14638 0.95103 0.96135 1.25004 0.95898 0.94862 0.86643 1.20700 1.02930 0.95797 0.94231 1.84485 1.61208 1.29199 1.21040 1.73864 1.19680 0.92920 1.19152 1.23151 1.00610 0.94503 0.88769 1.17782 1.04609 0.87363 0.96261 1.21756 0.99087 0.93680 0.99374 1.21306 0.99939 0.95559 0.98334 1.21673 0.95835 1.01078 0.92551 1.21365 1.00587 0.90779 1.01325 1.20296 0.96162 0.96915 0.93232 1.21143 1.02713 0.96634 0.97751 0.93198 0.92789 0.95618 0.90559 0.94000 0.92539 0.76568 0.85706 0.88069 0.88668 0.85918 0.84723 0.82248 0.82183 0.90964 0.89140 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.12 8.65 71.98 0.62 -5.50 16 2 C -0.12 -5.69 5.44 30.59 0.17 -5.52 16 3 C 0.28 13.86 2.20 44.25 0.10 13.96 16 4 H 0.01 0.50 7.52 -2.39 -0.02 0.48 16 5 C -0.55 -28.02 8.74 25.60 0.22 -27.79 16 6 H 0.07 3.36 7.78 -2.91 -0.02 3.33 16 7 C 0.02 1.12 5.28 84.65 0.45 1.57 16 8 N -0.91 -50.38 11.29 21.45 0.24 -50.13 16 9 Si 0.97 41.04 29.54 68.60 2.03 43.06 16 10 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.69 -28.75 4.11 -449.50 -1.85 -30.60 16 14 C 0.59 24.46 4.68 86.62 0.41 24.87 16 15 O -0.57 -27.47 14.39 -4.10 -0.06 -27.52 16 16 C -0.27 -9.48 6.20 -18.61 -0.12 -9.59 16 17 C 0.04 1.10 7.53 25.44 0.19 1.29 16 18 C -0.08 -1.60 10.32 71.23 0.73 -0.87 16 19 O 0.10 2.77 11.05 76.96 0.85 3.62 16 20 N -0.35 -10.49 8.69 -45.02 -0.39 -10.89 16 21 C 0.09 2.95 7.11 44.50 0.32 3.27 16 22 C -0.06 -1.90 5.88 -20.05 -0.12 -2.02 16 23 C -0.12 -3.99 9.40 22.49 0.21 -3.77 16 24 C -0.13 -3.65 10.03 22.24 0.22 -3.43 16 25 C -0.09 -1.96 10.04 22.31 0.22 -1.73 16 26 C -0.12 -2.54 9.69 22.24 0.22 -2.32 16 27 C -0.06 -1.68 5.91 -19.64 -0.12 -1.80 16 28 C -0.13 -2.75 9.31 71.24 0.66 -2.09 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 2.36 3.15 -2.39 -0.01 2.36 16 31 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 4.07 5.92 -2.39 -0.01 4.05 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.40 15.16 8.60 -92.72 -0.80 14.37 16 36 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.12 4.61 2.48 -2.91 -0.01 4.60 16 40 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 41 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 42 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 45 H 0.08 2.03 5.10 -2.39 -0.01 2.02 16 Total: -1.00 -66.19 364.90 5.46 -60.73 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.25 Total: 33.21 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 4.39 Total: -21.49 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -2.00 Total: -91.62 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: 0.79 Total: -23.90 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -66.19 5.46 -60.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281737640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.265 kcal (2) G-P(sol) polarization free energy of solvation -66.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds