Wall clock time and date at job start Tue Mar 31 2020 15:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47222 * 2 1 4 4 H 1.09003 * 109.47109 * 55.00510 * 3 2 1 5 5 C 1.50703 * 109.47149 * 175.00020 * 3 2 1 6 6 H 1.07994 * 119.99724 * 120.00180 * 5 3 2 7 7 C 1.37876 * 119.99708 * 300.00071 * 5 3 2 8 8 N 1.31509 * 120.00724 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99683 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47332 * 59.99996 * 9 7 5 11 11 H 1.48500 * 109.47038 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46876 * 299.99948 * 9 7 5 13 13 N 1.46493 * 109.47495 * 295.00104 * 3 2 1 14 14 C 1.34778 * 120.00235 * 84.99726 * 13 3 2 15 15 O 1.21599 * 119.99661 * 0.02562 * 14 13 3 16 16 N 1.34775 * 120.00341 * 180.02562 * 14 13 3 17 17 C 1.39966 * 119.99968 * 185.32154 * 16 14 13 18 18 C 1.39975 * 119.65543 * 33.64760 * 17 16 14 19 19 C 1.35932 * 120.92368 * 180.02562 * 18 17 16 20 20 C 1.40617 * 119.89667 * 359.90874 * 19 18 17 21 21 C 1.40485 * 121.09105 * 180.02562 * 20 19 18 22 22 C 1.36562 * 119.66103 * 180.02562 * 21 20 19 23 23 O 1.35911 * 119.56330 * 180.02562 * 22 21 20 24 24 C 1.42902 * 116.99695 * 179.97438 * 23 22 21 25 25 C 1.39830 * 120.87381 * 359.97438 * 22 21 20 26 26 C 1.35997 * 120.91275 * 0.29715 * 25 22 21 27 27 C 1.40628 * 119.74151 * 359.46103 * 26 25 22 28 28 C 1.37682 * 119.65599 * 213.61987 * 17 16 14 29 29 H 1.09002 * 109.46979 * 299.99870 * 1 2 3 30 30 H 1.08995 * 109.47025 * 59.99835 * 1 2 3 31 31 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46979 * 240.00129 * 2 1 3 33 33 H 1.09005 * 109.46971 * 120.00184 * 2 1 3 34 34 H 0.96997 * 120.00921 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.00467 * 265.00566 * 13 3 2 36 36 H 0.96995 * 119.99903 * 5.32363 * 16 14 13 37 37 H 1.08006 * 119.54182 * 0.02562 * 18 17 16 38 38 H 1.07993 * 120.05446 * 180.02562 * 19 18 17 39 39 H 1.08004 * 120.17178 * 0.04282 * 21 20 19 40 40 H 1.09001 * 109.46656 * 299.99487 * 24 23 22 41 41 H 1.08998 * 109.47251 * 59.99730 * 24 23 22 42 42 H 1.08995 * 109.46752 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.54103 * 180.02562 * 25 22 21 44 44 H 1.07999 * 120.13072 * 179.72182 * 26 25 22 45 45 H 1.07994 * 120.23837 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4063 0.3374 2.1733 9 14 6.0050 0.8811 1.3818 10 1 6.4995 2.2814 1.3822 11 1 6.3978 0.2165 2.6503 12 1 6.5975 0.1472 0.2349 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4316 16 7 0.0785 3.2666 -2.5186 17 6 -1.1394 3.9514 -2.6023 18 6 -1.6365 4.6202 -1.4777 19 6 -2.8166 5.2929 -1.5299 20 6 -3.5534 5.3237 -2.7272 21 6 -4.7755 6.0116 -2.8094 22 6 -5.4672 6.0220 -3.9869 23 8 -6.6491 6.6886 -4.0644 24 6 -7.3264 6.6642 -5.3225 25 6 -4.9751 5.3569 -5.1141 26 6 -3.7980 4.6774 -5.0660 27 6 -3.0567 4.6499 -3.8712 28 6 -1.8355 3.9607 -3.7901 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0611 2.9499 35 1 2.2719 2.1231 -1.9977 36 1 0.6657 3.2254 -3.2896 37 1 -1.0747 4.6016 -0.5554 38 1 -3.1868 5.8044 -0.6538 39 1 -5.1660 6.5298 -1.9460 40 1 -6.6889 7.1085 -6.0869 41 1 -7.5533 5.6330 -5.5930 42 1 -8.2536 7.2321 -5.2470 43 1 -5.5397 5.3796 -6.0345 44 1 -3.4319 4.1644 -5.9430 45 1 -1.4448 3.4430 -4.6536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287243154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:35 Heat of formation + Delta-G solvation = -23.024470 kcal Electronic energy + Delta-G solvation = -26917.335834 eV Core-core repulsion = 23093.077125 eV Total energy + Delta-G solvation = -3824.258709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.80184 -39.89227 -38.66369 -36.31505 -34.90274 -33.86475 -32.55709 -32.16334 -30.80302 -29.76950 -28.77131 -27.20256 -26.60440 -23.54991 -23.26501 -22.52451 -22.02299 -20.76095 -19.54494 -18.55886 -18.32212 -17.57905 -16.89915 -16.13612 -15.95394 -15.66713 -15.32809 -15.23939 -14.83221 -14.36067 -14.28722 -13.98065 -13.52624 -13.43276 -13.37259 -12.92059 -12.68992 -12.66743 -12.40813 -11.97120 -11.81654 -11.62833 -11.56202 -11.26393 -11.00685 -10.94972 -10.84201 -10.72184 -10.34829 -10.19919 -10.15255 -9.63831 -9.40262 -9.13393 -9.06654 -8.52663 -8.24643 -7.90351 -7.35036 -6.14438 -4.24096 0.52185 1.04819 2.04961 2.90800 3.09142 3.17903 3.24036 3.29811 3.31911 3.80442 4.18773 4.30243 4.48794 4.68581 4.74606 4.85057 4.86055 4.96479 5.12344 5.16244 5.17101 5.21458 5.30219 5.36231 5.58735 5.71268 5.83168 6.08326 6.15612 6.22069 6.40239 6.43717 6.45967 6.47814 6.64061 6.66973 6.72458 7.00285 7.08778 7.16454 7.24819 7.33249 7.36176 7.43442 7.62199 7.84391 7.95604 8.16525 8.70341 8.81579 9.21569 9.44121 10.90796 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.034624 B = 0.002148 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.490284 B =13032.546645 C =13100.356196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.718 5.718 14 C 0.692 3.308 15 O -0.574 6.574 16 N -0.698 5.698 17 C 0.190 3.810 18 C -0.095 4.095 19 C -0.101 4.101 20 C -0.033 4.033 21 C -0.141 4.141 22 C 0.110 3.890 23 O -0.321 6.321 24 C 0.028 3.972 25 C -0.189 4.189 26 C -0.071 4.071 27 C -0.055 4.055 28 C -0.153 4.153 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.021 0.979 32 H 0.030 0.970 33 H 0.099 0.901 34 H 0.265 0.735 35 H 0.386 0.614 36 H 0.402 0.598 37 H 0.143 0.857 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.005 10.076 -16.120 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.369 5.369 14 C 0.392 3.608 15 O -0.451 6.451 16 N -0.346 5.346 17 C 0.093 3.907 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.033 4.033 21 C -0.160 4.160 22 C 0.066 3.934 23 O -0.235 6.235 24 C -0.067 4.067 25 C -0.208 4.208 26 C -0.089 4.089 27 C -0.056 4.056 28 C -0.175 4.175 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.218 0.782 36 H 0.237 0.763 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.673 9.978 -14.815 23.763 hybrid contribution 1.566 -0.260 -0.988 1.870 sum -14.107 9.717 -15.803 23.306 Atomic orbital electron populations 1.21815 0.98229 0.97937 1.01301 1.21963 0.92708 0.99863 1.02238 1.18727 0.94008 0.88904 0.79888 0.93174 1.21172 0.90613 1.39246 1.06354 0.92150 1.24874 0.98617 0.94789 0.95361 1.69878 1.35238 1.37396 1.09309 0.86504 0.84797 0.78300 0.77454 1.20193 1.21121 1.20202 1.45855 1.12984 1.58713 1.19310 1.16128 0.83616 0.78762 0.82269 1.90914 1.51706 1.64278 1.38251 1.42964 1.20236 1.56234 1.15126 1.17492 0.86274 0.92566 0.94324 1.21079 0.96868 0.94603 0.98922 1.20836 0.94666 0.99872 0.96593 1.17751 0.94229 0.97711 0.93639 1.20135 0.95090 1.04051 0.96747 1.18574 0.86264 0.94216 0.94383 1.86083 1.32572 1.70018 1.34837 1.23014 0.96947 1.02012 0.84729 1.20947 0.99014 1.02682 0.98141 1.20802 0.93883 0.97453 0.96805 1.17713 0.95069 0.99335 0.93485 1.20776 0.94762 1.03961 0.98010 0.93119 0.94308 0.95990 0.95110 0.88242 0.92449 0.78218 0.76288 0.83929 0.85212 0.85024 0.92804 0.92784 0.88453 0.85610 0.85366 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.29 7.02 2.24 -69.09 -0.15 6.86 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.28 11.29 55.43 0.63 -23.66 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.72 -14.27 5.03 -59.81 -0.30 -14.57 16 14 C 0.69 13.33 6.85 -86.92 -0.60 12.73 16 15 O -0.57 -12.99 11.15 5.28 0.06 -12.93 16 16 N -0.70 -10.34 5.33 -14.23 -0.08 -10.42 16 17 C 0.19 2.81 6.26 -83.70 -0.52 2.29 16 18 C -0.10 -1.49 8.55 -39.76 -0.34 -1.83 16 19 C -0.10 -1.38 9.74 -39.51 -0.39 -1.76 16 20 C -0.03 -0.43 5.74 -106.81 -0.61 -1.04 16 21 C -0.14 -1.71 9.67 -39.34 -0.38 -2.09 16 22 C 0.11 1.25 6.63 -39.59 -0.26 0.98 16 23 O -0.32 -3.34 10.47 -19.46 -0.20 -3.54 16 24 C 0.03 0.17 9.80 101.05 0.99 1.16 16 25 C -0.19 -1.86 8.93 -39.79 -0.36 -2.21 16 26 C -0.07 -0.73 9.76 -39.48 -0.39 -1.12 16 27 C -0.06 -0.70 5.74 -106.81 -0.61 -1.31 16 28 C -0.15 -1.92 9.70 -38.95 -0.38 -2.30 16 29 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 30 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 35 H 0.39 6.56 8.56 -40.82 -0.35 6.21 16 36 H 0.40 4.55 8.83 -40.82 -0.36 4.19 16 37 H 0.14 2.51 6.39 -52.48 -0.34 2.18 16 38 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 40 H 0.05 0.27 7.63 -51.93 -0.40 -0.12 16 41 H 0.05 0.28 7.63 -51.93 -0.40 -0.11 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.13 0.89 6.21 -52.49 -0.33 0.56 16 44 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -31.04 366.72 -9.68 -40.72 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -6.07 Total: 11.61 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -4.22 Total: -7.99 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.25 Total: -48.65 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.14 Total: -16.48 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.04 -9.68 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287243154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.698 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds