Wall clock time and date at job start Tue Mar 31 2020 15:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47222 * 2 1 4 4 H 1.09003 * 109.47109 * 55.00510 * 3 2 1 5 5 C 1.50703 * 109.47149 * 175.00020 * 3 2 1 6 6 H 1.07994 * 119.99724 * 120.00180 * 5 3 2 7 7 C 1.37876 * 119.99708 * 300.00071 * 5 3 2 8 8 N 1.31509 * 120.00724 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99683 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47332 * 59.99996 * 9 7 5 11 11 H 1.48500 * 109.47038 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46876 * 299.99948 * 9 7 5 13 13 N 1.46493 * 109.47495 * 295.00104 * 3 2 1 14 14 C 1.34778 * 120.00235 * 84.99726 * 13 3 2 15 15 O 1.21599 * 119.99661 * 0.02562 * 14 13 3 16 16 N 1.34775 * 120.00341 * 180.02562 * 14 13 3 17 17 C 1.39966 * 119.99968 * 185.32154 * 16 14 13 18 18 C 1.39975 * 119.65543 * 33.64760 * 17 16 14 19 19 C 1.35932 * 120.92368 * 180.02562 * 18 17 16 20 20 C 1.40617 * 119.89667 * 359.90874 * 19 18 17 21 21 C 1.40485 * 121.09105 * 180.02562 * 20 19 18 22 22 C 1.36562 * 119.66103 * 180.02562 * 21 20 19 23 23 O 1.35911 * 119.56330 * 180.02562 * 22 21 20 24 24 C 1.42902 * 116.99695 * 179.97438 * 23 22 21 25 25 C 1.39830 * 120.87381 * 359.97438 * 22 21 20 26 26 C 1.35997 * 120.91275 * 0.29715 * 25 22 21 27 27 C 1.40628 * 119.74151 * 359.46103 * 26 25 22 28 28 C 1.37682 * 119.65599 * 213.61987 * 17 16 14 29 29 H 1.09002 * 109.46979 * 299.99870 * 1 2 3 30 30 H 1.08995 * 109.47025 * 59.99835 * 1 2 3 31 31 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46979 * 240.00129 * 2 1 3 33 33 H 1.09005 * 109.46971 * 120.00184 * 2 1 3 34 34 H 0.96997 * 120.00921 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.00467 * 265.00566 * 13 3 2 36 36 H 0.96995 * 119.99903 * 5.32363 * 16 14 13 37 37 H 1.08006 * 119.54182 * 0.02562 * 18 17 16 38 38 H 1.07993 * 120.05446 * 180.02562 * 19 18 17 39 39 H 1.08004 * 120.17178 * 0.04282 * 21 20 19 40 40 H 1.09001 * 109.46656 * 299.99487 * 24 23 22 41 41 H 1.08998 * 109.47251 * 59.99730 * 24 23 22 42 42 H 1.08995 * 109.46752 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.54103 * 180.02562 * 25 22 21 44 44 H 1.07999 * 120.13072 * 179.72182 * 26 25 22 45 45 H 1.07994 * 120.23837 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4063 0.3374 2.1733 9 14 6.0050 0.8811 1.3818 10 1 6.4995 2.2814 1.3822 11 1 6.3978 0.2165 2.6503 12 1 6.5975 0.1472 0.2349 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4316 16 7 0.0785 3.2666 -2.5186 17 6 -1.1394 3.9514 -2.6023 18 6 -1.6365 4.6202 -1.4777 19 6 -2.8166 5.2929 -1.5299 20 6 -3.5534 5.3237 -2.7272 21 6 -4.7755 6.0116 -2.8094 22 6 -5.4672 6.0220 -3.9869 23 8 -6.6491 6.6886 -4.0644 24 6 -7.3264 6.6642 -5.3225 25 6 -4.9751 5.3569 -5.1141 26 6 -3.7980 4.6774 -5.0660 27 6 -3.0567 4.6499 -3.8712 28 6 -1.8355 3.9607 -3.7901 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0611 2.9499 35 1 2.2719 2.1231 -1.9977 36 1 0.6657 3.2254 -3.2896 37 1 -1.0747 4.6016 -0.5554 38 1 -3.1868 5.8044 -0.6538 39 1 -5.1660 6.5298 -1.9460 40 1 -6.6889 7.1085 -6.0869 41 1 -7.5533 5.6330 -5.5930 42 1 -8.2536 7.2321 -5.2470 43 1 -5.5397 5.3796 -6.0345 44 1 -3.4319 4.1644 -5.9430 45 1 -1.4448 3.4430 -4.6536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287243154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:34 Heat of formation + Delta-G solvation = -42.206371 kcal Electronic energy + Delta-G solvation = -26918.167624 eV Core-core repulsion = 23093.077125 eV Total energy + Delta-G solvation = -3825.090499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.85194 -41.09801 -39.67431 -37.63724 -36.44770 -35.08310 -34.23268 -33.37380 -32.49822 -30.70237 -29.80905 -28.72638 -27.59781 -25.11227 -24.43633 -23.77596 -22.96877 -22.21206 -21.33440 -19.85093 -19.47034 -18.63500 -18.11269 -17.66525 -17.09467 -16.61857 -16.59417 -16.43674 -16.21049 -15.82863 -15.40584 -15.07905 -14.92479 -14.54071 -14.51189 -14.28259 -14.04553 -13.85435 -13.52256 -13.33878 -13.16599 -12.88618 -12.84442 -12.76719 -12.63991 -12.42929 -12.16796 -12.05312 -11.83961 -11.62018 -11.55896 -11.26036 -11.05690 -10.91304 -10.51995 -10.18237 -9.63089 -9.23986 -8.35505 -8.14368 -6.31575 -0.40598 0.06096 1.09926 1.46132 1.47931 1.55450 1.77027 1.94652 2.38894 2.42344 2.44910 3.14797 3.17908 3.47905 3.67990 3.89755 3.97021 4.22702 4.28069 4.30533 4.36725 4.44508 4.45474 4.50966 4.58723 4.59492 4.75854 4.77940 4.84065 4.92216 5.06958 5.12078 5.24704 5.26713 5.31708 5.42327 5.44789 5.46574 5.55880 5.60590 5.64246 5.77471 5.79357 5.89255 6.06394 6.18486 6.31219 6.47793 6.76307 7.28213 7.36858 7.74544 8.90691 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.034624 B = 0.002148 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.490284 B =13032.546645 C =13100.356196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.297 3.703 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.715 5.715 14 C 0.692 3.308 15 O -0.612 6.612 16 N -0.678 5.678 17 C 0.157 3.843 18 C -0.118 4.118 19 C -0.105 4.105 20 C -0.042 4.042 21 C -0.167 4.167 22 C 0.115 3.885 23 O -0.339 6.339 24 C 0.017 3.983 25 C -0.186 4.186 26 C -0.065 4.065 27 C -0.074 4.074 28 C -0.128 4.128 29 H 0.024 0.976 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.421 0.579 37 H 0.110 0.890 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.116 0.884 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.618 10.304 -20.041 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.367 5.367 14 C 0.393 3.607 15 O -0.492 6.492 16 N -0.327 5.327 17 C 0.061 3.939 18 C -0.138 4.138 19 C -0.124 4.124 20 C -0.043 4.043 21 C -0.186 4.186 22 C 0.070 3.930 23 O -0.253 6.253 24 C -0.078 4.078 25 C -0.204 4.204 26 C -0.082 4.082 27 C -0.075 4.075 28 C -0.150 4.150 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.259 0.741 37 H 0.128 0.872 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.134 0.866 43 H 0.177 0.823 44 H 0.180 0.820 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.300 10.241 -18.819 26.921 hybrid contribution 1.489 -0.191 0.110 1.505 sum -14.811 10.050 -18.709 25.892 Atomic orbital electron populations 1.21635 0.97115 0.98826 1.00137 1.21806 0.93570 0.99317 1.01315 1.18261 0.93433 0.88787 0.80215 0.98316 1.21526 0.91302 1.38988 1.06736 0.90955 1.25755 1.03239 0.94437 0.95043 1.70038 1.37099 1.38249 1.09825 0.85427 0.79172 0.78368 0.77517 1.19767 1.21324 1.18902 1.45440 1.13810 1.58970 1.18483 1.16195 0.82924 0.78614 0.82993 1.90898 1.52721 1.65537 1.40085 1.42544 1.20733 1.55295 1.14172 1.17600 0.86908 0.94206 0.95161 1.20915 0.97779 0.96714 0.98432 1.20945 0.94187 0.99653 0.97613 1.17901 0.94610 0.98077 0.93681 1.20216 0.95370 1.05162 0.97828 1.18785 0.86347 0.93428 0.94452 1.86074 1.32201 1.69660 1.37359 1.23361 0.97623 1.03383 0.83391 1.21319 0.98956 1.01383 0.98778 1.21165 0.93437 0.96893 0.96755 1.18026 0.95538 0.99596 0.94342 1.21067 0.93915 1.02271 0.97723 0.95688 0.94025 0.93879 0.93995 0.90936 0.92602 0.76324 0.74108 0.87164 0.84396 0.84858 0.91361 0.91561 0.86611 0.82293 0.81954 0.82245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.51 71.98 0.61 -4.89 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.30 15.05 2.24 44.25 0.10 15.15 16 4 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 5 C -0.55 -28.48 8.73 25.60 0.22 -28.26 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.83 5.29 84.66 0.45 1.27 16 8 N -0.91 -51.97 11.29 21.45 0.24 -51.72 16 9 Si 0.97 41.68 29.54 68.60 2.03 43.70 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 13 N -0.71 -28.86 5.03 -461.41 -2.32 -31.18 16 14 C 0.69 27.43 6.85 179.05 1.23 28.65 16 15 O -0.61 -29.36 11.15 -4.03 -0.04 -29.40 16 16 N -0.68 -19.93 5.33 -317.18 -1.69 -21.62 16 17 C 0.16 4.64 6.26 38.13 0.24 4.87 16 18 C -0.12 -3.94 8.55 22.16 0.19 -3.75 16 19 C -0.11 -3.03 9.74 22.31 0.22 -2.81 16 20 C -0.04 -1.10 5.74 -21.28 -0.12 -1.22 16 21 C -0.17 -3.96 9.67 22.43 0.22 -3.74 16 22 C 0.12 2.35 6.63 22.26 0.15 2.50 16 23 O -0.34 -6.27 10.47 -92.55 -0.97 -7.24 16 24 C 0.02 0.15 9.80 113.37 1.11 1.26 16 25 C -0.19 -2.93 8.93 22.13 0.20 -2.74 16 26 C -0.06 -1.07 9.76 22.33 0.22 -0.85 16 27 C -0.07 -1.72 5.74 -21.28 -0.12 -1.84 16 28 C -0.13 -2.95 9.70 22.68 0.22 -2.73 16 29 H 0.02 1.23 7.84 -2.39 -0.02 1.21 16 30 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 3.99 5.95 -2.38 -0.01 3.98 16 34 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.40 13.42 8.56 -92.71 -0.79 12.62 16 36 H 0.42 8.87 8.83 -92.71 -0.82 8.05 16 37 H 0.11 4.32 6.39 -2.91 -0.02 4.30 16 38 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 39 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 40 H 0.07 0.42 7.63 -2.39 -0.02 0.40 16 41 H 0.07 0.44 7.63 -2.39 -0.02 0.42 16 42 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.16 1.42 6.21 -2.91 -0.02 1.40 16 44 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 45 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -70.92 366.72 1.96 -68.97 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -0.57 Total: 33.41 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 5.29 Total: -4.91 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -3.77 Total: -104.52 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -1.01 Total: -36.64 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -70.92 1.96 -68.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287243154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.759 kcal (2) G-P(sol) polarization free energy of solvation -70.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds