Wall clock time and date at job start Tue Mar 31 2020 16:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99930 * 2 1 4 4 N 1.46895 * 109.47386 * 125.14655 * 3 2 1 5 5 C 1.46909 * 110.99888 * 199.64733 * 4 3 2 6 6 C 1.50698 * 109.46940 * 66.04497 * 5 4 3 7 7 H 1.07996 * 120.00344 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99542 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99855 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99844 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46841 * 59.99967 * 10 8 6 12 12 H 1.48504 * 109.46850 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47313 * 300.00197 * 10 8 6 14 14 C 1.46896 * 110.99895 * 75.69517 * 4 3 2 15 15 C 1.53008 * 109.46919 * 199.68789 * 14 4 3 16 16 C 1.52995 * 109.47122 * 174.84826 * 15 14 4 17 17 N 1.46501 * 109.47211 * 179.97438 * 16 15 14 18 18 C 1.34523 * 124.45808 * 269.97537 * 17 16 15 19 19 O 1.21446 * 125.71320 * 0.04760 * 18 17 16 20 20 C 1.47820 * 108.57720 * 180.02562 * 18 17 16 21 21 C 1.38562 * 134.29527 * 180.02562 * 20 18 17 22 22 C 1.38612 * 119.72298 * 179.97438 * 21 20 18 23 23 C 1.38233 * 120.45057 * 0.02562 * 22 21 20 24 24 C 1.38611 * 120.46359 * 359.96858 * 23 22 21 25 25 C 1.38567 * 119.72233 * 0.02562 * 24 23 22 26 26 C 1.34520 * 124.46073 * 90.00121 * 17 16 15 27 27 O 1.21457 * 125.70817 * 0.02562 * 26 17 16 28 28 H 1.07996 * 120.00126 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99381 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00481 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46844 * 5.14600 * 3 2 1 32 32 H 1.09004 * 109.47266 * 245.15069 * 3 2 1 33 33 H 1.09000 * 109.46773 * 186.04433 * 5 4 3 34 34 H 1.09002 * 109.46526 * 306.04322 * 5 4 3 35 35 H 0.97001 * 119.99992 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47532 * 79.68676 * 14 4 3 37 37 H 1.08998 * 109.46860 * 319.68209 * 14 4 3 38 38 H 1.09001 * 109.46736 * 54.85174 * 15 14 4 39 39 H 1.08997 * 109.47245 * 294.85099 * 15 14 4 40 40 H 1.09001 * 109.46917 * 59.99985 * 16 15 14 41 41 H 1.09001 * 109.47738 * 300.00360 * 16 15 14 42 42 H 1.08003 * 120.13869 * 359.67864 * 21 20 18 43 43 H 1.07997 * 119.77245 * 179.97438 * 22 21 20 44 44 H 1.08003 * 119.76410 * 179.97438 * 23 22 21 45 45 H 1.07997 * 120.13249 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9988 1.3306 1.1324 5 6 3.4017 2.7069 1.4516 6 6 2.2075 3.4757 1.9555 7 1 1.2457 2.9905 2.0314 8 6 2.3430 4.7987 2.3195 9 7 3.5144 5.3893 2.2275 10 14 0.8626 5.7520 2.9434 11 1 0.3307 5.0964 4.1651 12 1 1.2700 7.1431 3.2662 13 1 -0.1893 5.7741 1.8956 14 6 4.1716 0.4873 0.8656 15 6 4.8601 0.1384 2.1868 16 6 6.0038 -0.8428 1.9223 17 7 6.6634 -1.1763 3.1872 18 6 7.7042 -0.4990 3.7046 19 8 8.2371 0.4714 3.2054 20 6 8.0902 -1.1332 4.9828 21 6 9.0650 -0.8783 5.9340 22 6 9.1610 -1.6893 7.0540 23 6 8.2917 -2.7499 7.2276 24 6 7.3115 -3.0168 6.2845 25 6 7.2036 -2.2145 5.1599 26 6 6.3084 -2.2004 3.9838 27 8 5.4045 -2.9834 3.7715 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3587 2.1315 0.0922 32 1 2.6192 1.4039 -0.9325 33 1 4.1740 2.6902 2.2206 34 1 3.7919 3.1883 0.5550 35 1 3.6098 6.3200 2.4839 36 1 4.8685 1.0264 0.2240 37 1 3.8544 -0.4292 0.3682 38 1 4.1380 -0.3191 2.8630 39 1 5.2578 1.0464 2.6400 40 1 6.7259 -0.3853 1.2460 41 1 5.6062 -1.7508 1.4690 42 1 9.7502 -0.0542 5.8008 43 1 9.9208 -1.4916 7.7957 44 1 8.3767 -3.3749 8.1043 45 1 6.6354 -3.8471 6.4254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292280847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:59 Heat of formation + Delta-G solvation = 7.775068 kcal Electronic energy + Delta-G solvation = -27061.379453 eV Core-core repulsion = 23238.456313 eV Total energy + Delta-G solvation = -3822.923141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.42986 -38.79072 -38.68584 -37.37061 -35.98144 -33.90442 -33.05111 -32.14004 -31.47903 -30.45132 -27.30779 -26.33915 -25.27921 -24.27195 -23.08404 -22.39235 -21.75771 -20.22185 -19.98797 -19.05837 -17.99044 -17.38570 -16.68429 -16.50226 -16.27140 -15.50218 -15.14615 -14.99378 -14.82295 -14.63988 -14.35587 -14.34214 -14.04915 -13.98522 -13.52554 -13.21675 -12.86405 -12.68077 -12.37943 -12.06817 -12.04683 -11.88015 -11.59059 -11.37503 -10.98088 -10.79588 -10.66669 -10.55586 -10.52852 -10.37809 -10.12813 -9.84927 -9.75616 -9.57175 -9.50317 -9.18909 -8.87150 -8.41485 -7.24112 -6.00625 -4.02043 -0.18542 0.62872 1.79542 2.23164 2.77382 2.84738 3.27880 3.34681 3.38655 3.40730 3.41919 4.10881 4.27688 4.44058 4.50004 4.70155 4.84033 4.86653 4.92082 5.09267 5.28431 5.33377 5.34513 5.41382 5.44224 5.57612 5.61616 5.66421 5.71594 5.77746 5.81841 5.88768 6.06130 6.14755 6.22199 6.31035 6.38453 6.58294 6.64447 6.65761 7.07824 7.09482 7.27050 7.33481 7.35547 7.56712 7.82390 8.10806 8.21233 8.55839 9.05559 9.61932 11.10067 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011486 B = 0.003043 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.237637 B = 9198.653301 C =10483.084738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C 0.083 3.917 4 N -0.533 5.533 5 C 0.193 3.807 6 C -0.509 4.509 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.061 3.939 15 C -0.129 4.129 16 C 0.113 3.887 17 N -0.572 5.572 18 C 0.571 3.429 19 O -0.454 6.454 20 C -0.136 4.136 21 C -0.047 4.047 22 C -0.098 4.098 23 C -0.099 4.099 24 C -0.047 4.047 25 C -0.138 4.138 26 C 0.574 3.426 27 O -0.461 6.461 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.029 0.971 33 H 0.033 0.967 34 H -0.009 1.009 35 H 0.262 0.738 36 H 0.029 0.971 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.438 -18.112 6.661 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.149 4.149 3 C -0.044 4.044 4 N -0.257 5.257 5 C 0.068 3.932 6 C -0.548 4.548 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.068 4.068 15 C -0.167 4.167 16 C -0.007 4.007 17 N -0.314 5.314 18 C 0.359 3.641 19 O -0.324 6.324 20 C -0.140 4.140 21 C -0.065 4.065 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.066 4.066 25 C -0.142 4.142 26 C 0.363 3.637 27 O -0.332 6.332 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.009 0.991 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.053 -17.972 6.611 22.110 hybrid contribution -0.345 0.995 -0.286 1.091 sum 10.708 -16.977 6.325 21.045 Atomic orbital electron populations 1.23691 0.95980 1.01168 1.03196 1.22996 0.95876 0.98475 0.97519 1.21179 0.96042 0.95548 0.91674 1.62074 1.12785 1.14167 1.36644 1.19777 0.96709 0.81398 0.95342 1.21131 0.95667 0.95010 1.42965 0.91887 1.24986 0.95969 0.97678 0.95900 1.69953 1.22919 1.12286 1.48521 0.86583 0.82784 0.78764 0.79424 1.20180 1.21355 1.20271 1.21884 0.92809 0.97349 0.94791 1.21896 0.96070 0.99014 0.99764 1.21862 0.95982 1.00899 0.81983 1.46588 1.31915 1.29329 1.23519 1.18374 0.79058 0.82232 0.84401 1.90843 1.54142 1.22725 1.64738 1.20641 0.98890 0.97828 0.96598 1.20832 0.95580 0.98663 0.91447 1.21463 0.98929 0.94233 0.96960 1.21455 0.94107 0.97344 0.98811 1.20804 0.97098 0.97840 0.90816 1.20633 0.98161 0.98457 0.96922 1.18343 0.82794 0.79798 0.82796 1.90812 1.28390 1.39434 1.74589 0.88636 0.89310 0.88399 0.88990 0.95327 0.94940 0.99139 0.92874 0.95254 0.92000 0.90584 0.90736 0.88693 0.88712 0.83972 0.84120 0.84149 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.14 14.32 29.01 0.42 -2.73 16 2 C -0.13 -2.18 9.33 -36.03 -0.34 -2.52 16 3 C 0.08 1.64 5.24 -4.98 -0.03 1.62 16 4 N -0.53 -11.59 4.35 -237.51 -1.03 -12.62 16 5 C 0.19 5.07 4.55 -4.97 -0.02 5.05 16 6 C -0.51 -14.46 8.23 -34.44 -0.28 -14.74 16 7 H 0.06 1.78 7.31 -52.49 -0.38 1.39 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 10 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 C 0.06 1.09 4.81 -3.82 -0.02 1.07 16 15 C -0.13 -2.21 5.57 -26.73 -0.15 -2.36 16 16 C 0.11 1.56 5.74 -4.04 -0.02 1.54 16 17 N -0.57 -8.06 2.62 -117.62 -0.31 -8.37 16 18 C 0.57 8.18 8.02 -12.45 -0.10 8.08 16 19 O -0.45 -7.74 17.68 5.41 0.10 -7.64 16 20 C -0.14 -1.55 6.40 -104.83 -0.67 -2.22 16 21 C -0.05 -0.39 10.09 -39.32 -0.40 -0.79 16 22 C -0.10 -0.57 10.04 -39.45 -0.40 -0.96 16 23 C -0.10 -0.56 10.04 -39.45 -0.40 -0.96 16 24 C -0.05 -0.37 10.09 -39.32 -0.40 -0.77 16 25 C -0.14 -1.53 6.40 -104.84 -0.67 -2.20 16 26 C 0.57 7.87 8.02 -12.46 -0.10 7.77 16 27 O -0.46 -7.26 17.68 5.40 0.10 -7.16 16 28 H 0.10 1.51 7.84 -52.49 -0.41 1.10 16 29 H 0.09 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.10 1.50 7.27 -52.49 -0.38 1.12 16 31 H 0.09 2.01 6.23 -51.93 -0.32 1.69 16 32 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 33 H 0.03 0.92 6.72 -51.93 -0.35 0.57 16 34 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.03 0.53 8.00 -51.93 -0.42 0.11 16 37 H 0.06 0.96 6.81 -51.93 -0.35 0.60 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.07 1.48 6.95 -51.93 -0.36 1.12 16 40 H 0.09 1.24 7.96 -51.93 -0.41 0.83 16 41 H 0.09 1.17 7.97 -51.93 -0.41 0.75 16 42 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 43 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 44 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 45 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -33.87 384.74 -9.62 -43.49 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.32 Total: -0.52 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -3.67 Total: -3.60 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.60 Total: -47.29 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.19 Total: -14.80 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.87 -9.62 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292280847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.261 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds