Wall clock time and date at job start Tue Mar 31 2020 16:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99930 * 2 1 4 4 N 1.46895 * 109.47386 * 125.14655 * 3 2 1 5 5 C 1.46909 * 110.99888 * 199.64733 * 4 3 2 6 6 C 1.50698 * 109.46940 * 66.04497 * 5 4 3 7 7 H 1.07996 * 120.00344 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99542 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99855 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99844 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46841 * 59.99967 * 10 8 6 12 12 H 1.48504 * 109.46850 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47313 * 300.00197 * 10 8 6 14 14 C 1.46896 * 110.99895 * 75.69517 * 4 3 2 15 15 C 1.53008 * 109.46919 * 199.68789 * 14 4 3 16 16 C 1.52995 * 109.47122 * 174.84826 * 15 14 4 17 17 N 1.46501 * 109.47211 * 179.97438 * 16 15 14 18 18 C 1.34523 * 124.45808 * 269.97537 * 17 16 15 19 19 O 1.21446 * 125.71320 * 0.04760 * 18 17 16 20 20 C 1.47820 * 108.57720 * 180.02562 * 18 17 16 21 21 C 1.38562 * 134.29527 * 180.02562 * 20 18 17 22 22 C 1.38612 * 119.72298 * 179.97438 * 21 20 18 23 23 C 1.38233 * 120.45057 * 0.02562 * 22 21 20 24 24 C 1.38611 * 120.46359 * 359.96858 * 23 22 21 25 25 C 1.38567 * 119.72233 * 0.02562 * 24 23 22 26 26 C 1.34520 * 124.46073 * 90.00121 * 17 16 15 27 27 O 1.21457 * 125.70817 * 0.02562 * 26 17 16 28 28 H 1.07996 * 120.00126 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99381 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00481 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46844 * 5.14600 * 3 2 1 32 32 H 1.09004 * 109.47266 * 245.15069 * 3 2 1 33 33 H 1.09000 * 109.46773 * 186.04433 * 5 4 3 34 34 H 1.09002 * 109.46526 * 306.04322 * 5 4 3 35 35 H 0.97001 * 119.99992 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47532 * 79.68676 * 14 4 3 37 37 H 1.08998 * 109.46860 * 319.68209 * 14 4 3 38 38 H 1.09001 * 109.46736 * 54.85174 * 15 14 4 39 39 H 1.08997 * 109.47245 * 294.85099 * 15 14 4 40 40 H 1.09001 * 109.46917 * 59.99985 * 16 15 14 41 41 H 1.09001 * 109.47738 * 300.00360 * 16 15 14 42 42 H 1.08003 * 120.13869 * 359.67864 * 21 20 18 43 43 H 1.07997 * 119.77245 * 179.97438 * 22 21 20 44 44 H 1.08003 * 119.76410 * 179.97438 * 23 22 21 45 45 H 1.07997 * 120.13249 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9988 1.3306 1.1324 5 6 3.4017 2.7069 1.4516 6 6 2.2075 3.4757 1.9555 7 1 1.2457 2.9905 2.0314 8 6 2.3430 4.7987 2.3195 9 7 3.5144 5.3893 2.2275 10 14 0.8626 5.7520 2.9434 11 1 0.3307 5.0964 4.1651 12 1 1.2700 7.1431 3.2662 13 1 -0.1893 5.7741 1.8956 14 6 4.1716 0.4873 0.8656 15 6 4.8601 0.1384 2.1868 16 6 6.0038 -0.8428 1.9223 17 7 6.6634 -1.1763 3.1872 18 6 7.7042 -0.4990 3.7046 19 8 8.2371 0.4714 3.2054 20 6 8.0902 -1.1332 4.9828 21 6 9.0650 -0.8783 5.9340 22 6 9.1610 -1.6893 7.0540 23 6 8.2917 -2.7499 7.2276 24 6 7.3115 -3.0168 6.2845 25 6 7.2036 -2.2145 5.1599 26 6 6.3084 -2.2004 3.9838 27 8 5.4045 -2.9834 3.7715 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3587 2.1315 0.0922 32 1 2.6192 1.4039 -0.9325 33 1 4.1740 2.6902 2.2206 34 1 3.7919 3.1883 0.5550 35 1 3.6098 6.3200 2.4839 36 1 4.8685 1.0264 0.2240 37 1 3.8544 -0.4292 0.3682 38 1 4.1380 -0.3191 2.8630 39 1 5.2578 1.0464 2.6400 40 1 6.7259 -0.3853 1.2460 41 1 5.6062 -1.7508 1.4690 42 1 9.7502 -0.0542 5.8008 43 1 9.9208 -1.4916 7.7957 44 1 8.3767 -3.3749 8.1043 45 1 6.6354 -3.8471 6.4254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292280847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:58 Heat of formation + Delta-G solvation = -13.603184 kcal Electronic energy + Delta-G solvation = -27062.306484 eV Core-core repulsion = 23238.456313 eV Total energy + Delta-G solvation = -3823.850171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.41844 -39.82710 -39.57110 -38.99602 -37.15777 -35.13596 -35.00785 -33.60622 -32.11462 -31.64421 -29.24398 -27.62547 -26.22622 -25.88236 -24.43198 -23.22719 -23.07272 -21.89087 -20.95702 -20.46713 -18.85213 -18.63886 -18.38230 -17.75862 -17.24068 -16.91752 -16.47967 -16.40961 -16.01448 -15.90846 -15.47915 -15.40708 -15.22997 -15.12676 -15.03277 -14.59819 -14.08345 -13.97636 -13.62114 -13.34054 -13.28630 -13.23651 -13.07554 -12.79577 -12.67187 -12.54968 -12.41526 -12.04692 -11.93516 -11.65499 -11.51947 -11.44944 -11.29272 -10.98725 -10.63718 -10.24948 -10.21425 -10.19039 -9.04912 -8.23285 -6.33858 -1.03317 -0.00453 0.96661 1.19539 1.37134 1.40904 1.46631 1.49105 1.78833 2.37401 2.56713 2.63576 3.08690 3.17191 3.29237 3.60082 3.73268 3.91643 4.02156 4.06910 4.16106 4.19047 4.21842 4.26141 4.30614 4.39519 4.45897 4.49244 4.58730 4.64984 4.82429 4.84904 4.92437 4.98122 5.04853 5.14011 5.19911 5.22239 5.22825 5.27655 5.53999 5.61739 5.71263 5.75931 6.00155 6.02722 6.04595 6.30972 6.48094 6.59451 6.82088 7.35667 8.87727 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011486 B = 0.003043 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.237637 B = 9198.653301 C =10483.084738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C 0.084 3.916 4 N -0.541 5.541 5 C 0.211 3.789 6 C -0.525 4.525 7 H 0.062 0.938 8 C 0.001 3.999 9 N -0.934 5.934 10 Si 0.969 3.031 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.265 1.265 14 C 0.062 3.938 15 C -0.115 4.115 16 C 0.118 3.882 17 N -0.580 5.580 18 C 0.565 3.435 19 O -0.498 6.498 20 C -0.162 4.162 21 C -0.049 4.049 22 C -0.082 4.082 23 C -0.081 4.081 24 C -0.044 4.044 25 C -0.160 4.160 26 C 0.572 3.428 27 O -0.489 6.489 28 H 0.088 0.912 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.001 0.999 34 H -0.040 1.040 35 H 0.265 0.735 36 H 0.025 0.975 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.151 0.849 43 H 0.182 0.818 44 H 0.184 0.816 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.189 -20.421 8.860 24.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.164 4.164 3 C -0.043 4.043 4 N -0.265 5.265 5 C 0.084 3.916 6 C -0.563 4.563 7 H 0.080 0.920 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.793 3.207 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.190 1.190 14 C -0.066 4.066 15 C -0.153 4.153 16 C -0.003 4.003 17 N -0.320 5.320 18 C 0.357 3.643 19 O -0.371 6.371 20 C -0.166 4.166 21 C -0.067 4.067 22 C -0.100 4.100 23 C -0.099 4.099 24 C -0.062 4.062 25 C -0.163 4.163 26 C 0.363 3.637 27 O -0.362 6.362 28 H 0.106 0.894 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.020 0.980 34 H -0.022 1.022 35 H 0.073 0.927 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.168 0.832 43 H 0.199 0.801 44 H 0.201 0.799 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.799 -20.316 8.809 24.636 hybrid contribution -0.219 1.648 -0.890 1.886 sum 10.580 -18.667 7.919 22.872 Atomic orbital electron populations 1.23923 0.95566 1.02321 1.00566 1.22881 0.96305 0.97367 0.99836 1.21149 0.95339 0.96782 0.91015 1.62020 1.14488 1.11660 1.38335 1.19369 0.95294 0.83929 0.92961 1.21425 0.96043 0.95719 1.43128 0.91980 1.25937 0.99113 0.98731 0.95875 1.70095 1.25259 1.12718 1.49399 0.85447 0.78975 0.77200 0.79091 1.19443 1.20669 1.18972 1.21975 0.91569 0.97849 0.95244 1.21704 0.96726 0.98007 0.98913 1.21770 0.94997 1.00894 0.82615 1.46691 1.32005 1.29701 1.23653 1.18987 0.78476 0.81519 0.85351 1.90802 1.55557 1.24591 1.66180 1.20532 1.01186 0.98631 0.96244 1.21181 0.94658 0.99351 0.91532 1.21966 0.99106 0.92816 0.96081 1.21989 0.92013 0.96967 0.98890 1.21200 0.97774 0.97420 0.89829 1.20549 0.98238 1.00037 0.97497 1.18813 0.82606 0.78904 0.83372 1.90776 1.29697 1.40335 1.75429 0.89393 0.86186 0.86309 0.91699 0.94845 0.98047 1.02193 0.92673 0.95660 0.88543 0.91869 0.94602 0.88227 0.86500 0.83166 0.80087 0.79851 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.40 14.32 67.78 0.97 -4.43 16 2 C -0.15 -4.70 9.33 25.64 0.24 -4.46 16 3 C 0.08 3.41 5.24 85.56 0.45 3.86 16 4 N -0.54 -24.56 4.35 -905.35 -3.93 -28.49 16 5 C 0.21 11.83 4.55 85.55 0.39 12.22 16 6 C -0.52 -31.00 8.23 25.60 0.21 -30.79 16 7 H 0.06 3.60 7.31 -2.91 -0.02 3.58 16 8 C 0.00 0.09 5.46 84.66 0.46 0.55 16 9 N -0.93 -58.40 13.29 21.45 0.28 -58.12 16 10 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 14 C 0.06 2.31 4.81 86.31 0.41 2.73 16 15 C -0.11 -4.21 5.57 30.60 0.17 -4.04 16 16 C 0.12 3.45 5.74 86.38 0.50 3.94 16 17 N -0.58 -17.42 2.62 -762.96 -2.00 -19.42 16 18 C 0.57 17.46 8.02 86.82 0.70 18.16 16 19 O -0.50 -18.50 17.68 -3.55 -0.06 -18.56 16 20 C -0.16 -3.75 6.40 -20.00 -0.13 -3.88 16 21 C -0.05 -0.74 10.09 22.44 0.23 -0.51 16 22 C -0.08 -0.61 10.04 22.36 0.22 -0.38 16 23 C -0.08 -0.54 10.04 22.36 0.22 -0.32 16 24 C -0.04 -0.58 10.09 22.44 0.23 -0.36 16 25 C -0.16 -3.49 6.40 -20.00 -0.13 -3.62 16 26 C 0.57 16.24 8.02 86.82 0.70 16.93 16 27 O -0.49 -15.70 17.68 -3.58 -0.06 -15.76 16 28 H 0.09 2.68 7.84 -2.91 -0.02 2.66 16 29 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.12 3.35 7.27 -2.91 -0.02 3.33 16 31 H 0.06 2.94 6.23 -2.39 -0.01 2.92 16 32 H 0.03 1.29 8.00 -2.38 -0.02 1.27 16 33 H 0.00 0.09 6.72 -2.39 -0.02 0.07 16 34 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 35 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.03 0.96 8.00 -2.39 -0.02 0.94 16 37 H 0.10 2.92 6.81 -2.39 -0.02 2.90 16 38 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.04 1.57 6.95 -2.39 -0.02 1.55 16 40 H 0.10 2.80 7.96 -2.39 -0.02 2.78 16 41 H 0.12 2.89 7.97 -2.39 -0.02 2.87 16 42 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.18 -0.04 8.06 -2.91 -0.02 -0.07 16 44 H 0.18 -0.25 8.06 -2.91 -0.02 -0.27 16 45 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -79.60 384.74 3.08 -76.53 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.99 Total: 10.49 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 5.84 Total: 5.60 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -5.65 Total: -106.03 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.13 Total: -34.32 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -79.60 3.08 -76.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292280847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.922 kcal (2) G-P(sol) polarization free energy of solvation -79.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds