Wall clock time and date at job start Tue Mar 31 2020 16:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 120.00243 * 2 1 4 4 N 1.46498 * 109.47317 * 124.99968 * 3 2 1 5 5 C 1.46502 * 119.99968 * 279.41636 * 4 3 2 6 6 C 1.50698 * 109.47074 * 269.99829 * 5 4 3 7 7 H 1.08000 * 120.00167 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99638 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00197 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99661 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47476 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47252 * 119.99902 * 10 8 6 13 13 H 1.48507 * 109.47112 * 239.99623 * 10 8 6 14 14 C 1.34777 * 120.00085 * 99.41462 * 4 3 2 15 15 O 1.21582 * 119.99897 * 185.87815 * 14 4 3 16 16 C 1.47599 * 119.99996 * 5.87703 * 14 4 3 17 17 C 1.39748 * 120.07304 * 135.14539 * 16 14 4 18 18 C 1.37662 * 119.92724 * 180.02562 * 17 16 14 19 19 C 1.39132 * 120.07318 * 0.02562 * 18 17 16 20 20 N 1.39442 * 119.92949 * 179.97438 * 19 18 17 21 21 C 1.46764 * 124.34738 * 354.01625 * 20 19 18 22 22 C 1.54479 * 105.47715 * 197.01592 * 21 20 19 23 23 C 1.54636 * 101.76216 * 334.58672 * 22 21 20 24 24 C 1.34419 * 124.35408 * 173.71617 * 20 19 18 25 25 O 1.21282 * 124.93675 * 359.57823 * 24 20 19 26 26 C 1.39132 * 120.14787 * 0.26949 * 19 18 17 27 27 C 1.37675 * 120.07147 * 359.45454 * 26 19 18 28 28 H 1.08005 * 119.99859 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.99950 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.99859 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47068 * 5.00038 * 3 2 1 32 32 H 1.09000 * 109.47542 * 245.00360 * 3 2 1 33 33 H 1.08999 * 109.47192 * 30.00346 * 5 4 3 34 34 H 1.09001 * 109.47211 * 149.99462 * 5 4 3 35 35 H 0.96998 * 120.00009 * 180.02562 * 9 8 6 36 36 H 1.07998 * 120.03695 * 0.02562 * 17 16 14 37 37 H 1.07999 * 119.96688 * 179.97438 * 18 17 16 38 38 H 1.09003 * 110.24727 * 316.01723 * 21 20 19 39 39 H 1.09002 * 110.24693 * 77.93062 * 21 20 19 40 40 H 1.09002 * 110.96904 * 92.69723 * 22 21 20 41 41 H 1.09000 * 110.97462 * 216.46682 * 22 21 20 42 42 H 1.08997 * 110.48783 * 143.47454 * 23 22 21 43 43 H 1.09001 * 110.48399 * 265.98501 * 23 22 21 44 44 H 1.08004 * 119.96339 * 179.72833 * 26 19 18 45 45 H 1.08000 * 120.03394 * 180.27576 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5075 1.6686 2.4717 6 6 2.6046 3.1577 2.6818 7 1 2.9896 3.7901 1.8955 8 6 2.2019 3.7128 3.8780 9 7 1.7327 2.9428 4.8354 10 14 2.3216 5.5586 4.1383 11 1 2.8778 6.1957 2.9176 12 1 0.9697 6.1087 4.4120 13 1 3.2131 5.8391 5.2924 14 6 4.2969 1.0467 0.9393 15 8 5.0479 0.9639 1.8918 16 6 4.8123 0.8348 -0.4275 17 6 6.0140 1.4288 -0.8227 18 6 6.4917 1.2296 -2.0983 19 6 5.7791 0.4385 -2.9940 20 7 6.2655 0.2392 -4.2856 21 6 7.4450 0.9143 -4.8396 22 6 7.3425 0.7334 -6.3703 23 6 6.4932 -0.5542 -6.4794 24 6 5.7176 -0.6001 -5.1813 25 8 4.7419 -1.2914 -4.9790 26 6 4.5793 -0.1493 -2.6058 27 6 4.0989 0.0412 -1.3297 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 1.4684 1.3546 2.5708 34 1 3.1145 1.1560 3.2179 35 1 1.4490 3.3333 5.6767 36 1 6.5674 2.0433 -0.1280 37 1 7.4201 1.6886 -2.4045 38 1 7.4286 1.9736 -4.5830 39 1 8.3567 0.4498 -4.4638 40 1 6.8300 1.5787 -6.8296 41 1 8.3281 0.5893 -6.8130 42 1 5.8149 -0.4929 -7.3303 43 1 7.1369 -1.4294 -6.5682 44 1 4.0264 -0.7592 -3.3049 45 1 3.1697 -0.4189 -1.0277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292475139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:22 Heat of formation + Delta-G solvation = -0.350066 kcal Electronic energy + Delta-G solvation = -27529.657747 eV Core-core repulsion = 23706.382274 eV Total energy + Delta-G solvation = -3823.275473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.37366 -39.71508 -37.82188 -36.88003 -35.74412 -33.50718 -33.06505 -32.03523 -31.03380 -29.57358 -28.14250 -27.38873 -25.58857 -24.11213 -23.43561 -22.35607 -21.50492 -20.10060 -20.06302 -18.79642 -17.89671 -17.19330 -16.81326 -16.45493 -16.12830 -15.65129 -14.87631 -14.77528 -14.58217 -14.32570 -14.26397 -14.04778 -13.99470 -13.67405 -13.55470 -13.17129 -13.02147 -12.82680 -12.52762 -12.19666 -12.00878 -11.95077 -11.61139 -11.54249 -11.25287 -11.17269 -11.02350 -10.79139 -10.60360 -10.33073 -10.16745 -9.91989 -9.61616 -9.19040 -8.99017 -8.86643 -8.42139 -7.98437 -7.65170 -6.02579 -4.07350 0.99383 1.43341 2.23530 2.46730 2.50351 3.30578 3.36031 3.38874 3.43235 3.78051 3.85309 3.91633 4.15160 4.28022 4.46006 4.46593 4.82462 4.91390 4.96255 5.01520 5.05889 5.16250 5.26251 5.29521 5.32398 5.35519 5.41562 5.43116 5.46196 5.49553 5.72242 6.05833 6.06411 6.07907 6.24043 6.26469 6.40962 6.56476 6.81190 6.84249 6.93576 6.99577 7.14578 7.48421 7.56987 7.70796 7.94257 8.25345 8.41250 8.90633 9.08002 9.57514 11.05593 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017476 B = 0.002942 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.834090 B = 9515.313428 C =10368.845535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.173 4.173 3 C 0.125 3.875 4 N -0.585 5.585 5 C 0.246 3.754 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.549 3.451 15 O -0.537 6.537 16 C -0.137 4.137 17 C -0.043 4.043 18 C -0.164 4.164 19 C 0.170 3.830 20 N -0.557 5.557 21 C 0.093 3.907 22 C -0.131 4.131 23 C -0.153 4.153 24 C 0.513 3.487 25 O -0.508 6.508 26 C -0.164 4.164 27 C -0.073 4.073 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.156 0.844 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.294 -5.129 -24.799 26.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.192 4.192 3 C 0.002 3.998 4 N -0.315 5.315 5 C 0.127 3.873 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.336 3.664 15 O -0.415 6.415 16 C -0.142 4.142 17 C -0.062 4.062 18 C -0.184 4.184 19 C 0.076 3.924 20 N -0.281 5.281 21 C -0.030 4.030 22 C -0.169 4.169 23 C -0.193 4.193 24 C 0.303 3.697 25 O -0.383 6.383 26 C -0.183 4.183 27 C -0.091 4.091 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.174 0.826 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.084 -5.518 -23.983 26.232 hybrid contribution 0.060 1.068 0.307 1.112 sum 9.144 -4.451 -23.675 25.767 Atomic orbital electron populations 1.23825 0.95753 1.01849 0.99870 1.23389 0.96435 0.98876 1.00520 1.20855 0.93229 0.95298 0.90466 1.48135 1.06325 1.66054 1.10962 1.19310 0.95147 0.95902 0.76937 1.21479 1.42563 0.92319 1.00190 0.92361 1.24934 0.95133 0.98348 0.95677 1.69947 1.42912 1.35059 1.05330 0.86449 0.77613 0.85169 0.78231 1.19789 1.20970 1.20879 1.18149 0.82705 0.77796 0.87725 1.90757 1.56602 1.51638 1.42529 1.20241 0.96913 1.01630 0.95366 1.20970 0.93692 0.96735 0.94815 1.20629 1.01161 1.02960 0.93684 1.17875 0.93957 0.97485 0.83054 1.45705 1.28907 1.41845 1.11594 1.22299 0.87723 0.99020 0.93925 1.22625 1.01810 0.97823 0.94618 1.22347 1.00232 1.00300 0.96461 1.21107 0.83844 0.78419 0.86369 1.90651 1.25633 1.41327 1.80694 1.21500 0.95688 1.03258 0.97895 1.21696 0.99216 0.96108 0.92122 0.88192 0.88641 0.87475 0.89802 0.89604 0.94737 0.93650 0.92775 0.84693 0.85445 0.89235 0.89960 0.89506 0.88559 0.87447 0.87340 0.82632 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 14.32 29.02 0.42 -2.03 16 2 C -0.17 -2.67 8.47 -36.03 -0.31 -2.98 16 3 C 0.13 2.20 5.33 -5.20 -0.03 2.17 16 4 N -0.58 -12.99 2.45 -177.64 -0.44 -13.42 16 5 C 0.25 6.59 5.20 -5.19 -0.03 6.57 16 6 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 7 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 10 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.55 12.25 7.27 -12.44 -0.09 12.16 16 15 O -0.54 -14.16 16.53 5.29 0.09 -14.07 16 16 C -0.14 -2.43 5.13 -104.95 -0.54 -2.97 16 17 C -0.04 -0.66 9.67 -39.23 -0.38 -1.04 16 18 C -0.16 -2.02 9.38 -39.46 -0.37 -2.39 16 19 C 0.17 2.17 6.59 -83.73 -0.55 1.62 16 20 N -0.56 -5.52 3.12 -112.26 -0.35 -5.87 16 21 C 0.09 0.50 6.24 -3.12 -0.02 0.48 16 22 C -0.13 -0.41 7.18 -25.09 -0.18 -0.59 16 23 C -0.15 -0.80 6.86 -26.74 -0.18 -0.98 16 24 C 0.51 5.32 7.92 -10.86 -0.09 5.23 16 25 O -0.51 -7.19 14.80 5.56 0.08 -7.11 16 26 C -0.16 -2.34 9.26 -39.46 -0.37 -2.71 16 27 C -0.07 -1.12 7.36 -39.22 -0.29 -1.41 16 28 H 0.10 1.36 7.84 -52.48 -0.41 0.95 16 29 H 0.10 1.15 8.06 -52.48 -0.42 0.73 16 30 H 0.11 1.58 6.83 -52.48 -0.36 1.22 16 31 H 0.08 1.51 7.79 -51.93 -0.40 1.10 16 32 H 0.09 1.36 4.90 -51.93 -0.25 1.11 16 33 H 0.03 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.05 1.37 7.35 -51.93 -0.38 0.99 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.13 1.16 6.99 -52.49 -0.37 0.79 16 38 H 0.09 0.42 7.69 -51.93 -0.40 0.02 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 42 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.16 2.30 5.25 -52.48 -0.28 2.03 16 45 H 0.14 2.08 4.00 -52.49 -0.21 1.87 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -36.24 371.72 -8.70 -44.94 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.99 Total: 1.70 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.42 Total: -2.63 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.05 Total: -45.40 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: 0.17 Total: -21.18 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.24 -8.70 -44.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292475139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.590 kcal (2) G-P(sol) polarization free energy of solvation -36.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds