Wall clock time and date at job start Tue Mar 31 2020 16:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 120.00243 * 2 1 4 4 N 1.46498 * 109.47317 * 124.99968 * 3 2 1 5 5 C 1.46502 * 119.99968 * 279.41636 * 4 3 2 6 6 C 1.50698 * 109.47074 * 269.99829 * 5 4 3 7 7 H 1.08000 * 120.00167 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99638 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00197 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99661 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47476 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47252 * 119.99902 * 10 8 6 13 13 H 1.48507 * 109.47112 * 239.99623 * 10 8 6 14 14 C 1.34777 * 120.00085 * 99.41462 * 4 3 2 15 15 O 1.21582 * 119.99897 * 185.87815 * 14 4 3 16 16 C 1.47599 * 119.99996 * 5.87703 * 14 4 3 17 17 C 1.39748 * 120.07304 * 135.14539 * 16 14 4 18 18 C 1.37662 * 119.92724 * 180.02562 * 17 16 14 19 19 C 1.39132 * 120.07318 * 0.02562 * 18 17 16 20 20 N 1.39442 * 119.92949 * 179.97438 * 19 18 17 21 21 C 1.46764 * 124.34738 * 354.01625 * 20 19 18 22 22 C 1.54479 * 105.47715 * 197.01592 * 21 20 19 23 23 C 1.54636 * 101.76216 * 334.58672 * 22 21 20 24 24 C 1.34419 * 124.35408 * 173.71617 * 20 19 18 25 25 O 1.21282 * 124.93675 * 359.57823 * 24 20 19 26 26 C 1.39132 * 120.14787 * 0.26949 * 19 18 17 27 27 C 1.37675 * 120.07147 * 359.45454 * 26 19 18 28 28 H 1.08005 * 119.99859 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.99950 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.99859 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47068 * 5.00038 * 3 2 1 32 32 H 1.09000 * 109.47542 * 245.00360 * 3 2 1 33 33 H 1.08999 * 109.47192 * 30.00346 * 5 4 3 34 34 H 1.09001 * 109.47211 * 149.99462 * 5 4 3 35 35 H 0.96998 * 120.00009 * 180.02562 * 9 8 6 36 36 H 1.07998 * 120.03695 * 0.02562 * 17 16 14 37 37 H 1.07999 * 119.96688 * 179.97438 * 18 17 16 38 38 H 1.09003 * 110.24727 * 316.01723 * 21 20 19 39 39 H 1.09002 * 110.24693 * 77.93062 * 21 20 19 40 40 H 1.09002 * 110.96904 * 92.69723 * 22 21 20 41 41 H 1.09000 * 110.97462 * 216.46682 * 22 21 20 42 42 H 1.08997 * 110.48783 * 143.47454 * 23 22 21 43 43 H 1.09001 * 110.48399 * 265.98501 * 23 22 21 44 44 H 1.08004 * 119.96339 * 179.72833 * 26 19 18 45 45 H 1.08000 * 120.03394 * 180.27576 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5075 1.6686 2.4717 6 6 2.6046 3.1577 2.6818 7 1 2.9896 3.7901 1.8955 8 6 2.2019 3.7128 3.8780 9 7 1.7327 2.9428 4.8354 10 14 2.3216 5.5586 4.1383 11 1 2.8778 6.1957 2.9176 12 1 0.9697 6.1087 4.4120 13 1 3.2131 5.8391 5.2924 14 6 4.2969 1.0467 0.9393 15 8 5.0479 0.9639 1.8918 16 6 4.8123 0.8348 -0.4275 17 6 6.0140 1.4288 -0.8227 18 6 6.4917 1.2296 -2.0983 19 6 5.7791 0.4385 -2.9940 20 7 6.2655 0.2392 -4.2856 21 6 7.4450 0.9143 -4.8396 22 6 7.3425 0.7334 -6.3703 23 6 6.4932 -0.5542 -6.4794 24 6 5.7176 -0.6001 -5.1813 25 8 4.7419 -1.2914 -4.9790 26 6 4.5793 -0.1493 -2.6058 27 6 4.0989 0.0412 -1.3297 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 1.4684 1.3546 2.5708 34 1 3.1145 1.1560 3.2179 35 1 1.4490 3.3333 5.6767 36 1 6.5674 2.0433 -0.1280 37 1 7.4201 1.6886 -2.4045 38 1 7.4286 1.9736 -4.5830 39 1 8.3567 0.4498 -4.4638 40 1 6.8300 1.5787 -6.8296 41 1 8.3281 0.5893 -6.8130 42 1 5.8149 -0.4929 -7.3303 43 1 7.1369 -1.4294 -6.5682 44 1 4.0264 -0.7592 -3.3049 45 1 3.1697 -0.4189 -1.0277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292475139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:21 Heat of formation + Delta-G solvation = -22.953448 kcal Electronic energy + Delta-G solvation = -27530.637903 eV Core-core repulsion = 23706.382274 eV Total energy + Delta-G solvation = -3824.255629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.19555 -41.17655 -39.11507 -37.67876 -37.40117 -35.20923 -34.15024 -33.73958 -32.19535 -30.78504 -29.23188 -28.62222 -27.09687 -25.70481 -24.31306 -23.94993 -22.21108 -21.43901 -21.01763 -20.24636 -18.76003 -18.66436 -18.32039 -17.76402 -17.51868 -16.83964 -16.38756 -16.24810 -16.03193 -15.56952 -15.29895 -14.98918 -14.78224 -14.67231 -14.59765 -14.43179 -14.25300 -14.14502 -13.83896 -13.53181 -13.32258 -13.17063 -12.96251 -12.90182 -12.60814 -12.45330 -12.32058 -12.24958 -12.13686 -11.94170 -11.68021 -11.22022 -10.88327 -10.66621 -10.65031 -10.43261 -10.03671 -9.56651 -8.99938 -8.24166 -6.39563 -0.17937 0.29289 1.24393 1.35474 1.37839 1.39075 1.50499 1.74244 1.83140 2.30555 2.43369 2.75807 3.05399 3.25898 3.55256 3.59046 3.82521 3.89596 4.01070 4.01845 4.10216 4.13747 4.19953 4.33911 4.36938 4.48931 4.63527 4.67226 4.77827 4.83861 4.91023 4.98372 4.99322 5.07149 5.10565 5.11641 5.21182 5.21732 5.35221 5.39106 5.47579 5.63706 5.71260 5.88417 5.90857 6.00968 6.03156 6.62255 6.70251 6.91781 7.21248 7.36802 8.83743 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017476 B = 0.002942 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.834090 B = 9515.313428 C =10368.845535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.195 4.195 3 C 0.126 3.874 4 N -0.589 5.589 5 C 0.264 3.736 6 C -0.545 4.545 7 H 0.054 0.946 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.971 3.029 11 H -0.266 1.266 12 H -0.268 1.268 13 H -0.280 1.280 14 C 0.544 3.456 15 O -0.593 6.593 16 C -0.165 4.165 17 C -0.049 4.049 18 C -0.147 4.147 19 C 0.181 3.819 20 N -0.560 5.560 21 C 0.080 3.920 22 C -0.117 4.117 23 C -0.145 4.145 24 C 0.498 3.502 25 O -0.555 6.555 26 C -0.173 4.173 27 C -0.067 4.067 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.024 0.976 34 H -0.001 1.001 35 H 0.268 0.732 36 H 0.130 0.870 37 H 0.169 0.831 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.127 0.873 44 H 0.153 0.847 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.674 -3.954 -28.338 30.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.214 4.214 3 C 0.005 3.995 4 N -0.318 5.318 5 C 0.143 3.857 6 C -0.583 4.583 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.795 3.205 11 H -0.190 1.190 12 H -0.193 1.193 13 H -0.205 1.205 14 C 0.334 3.666 15 O -0.475 6.475 16 C -0.170 4.170 17 C -0.068 4.068 18 C -0.168 4.168 19 C 0.086 3.914 20 N -0.282 5.282 21 C -0.041 4.041 22 C -0.154 4.154 23 C -0.184 4.184 24 C 0.290 3.710 25 O -0.433 6.433 26 C -0.193 4.193 27 C -0.086 4.086 28 H 0.121 0.879 29 H 0.139 0.861 30 H 0.130 0.870 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.042 0.958 34 H 0.017 0.983 35 H 0.077 0.923 36 H 0.148 0.852 37 H 0.186 0.814 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.170 0.830 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.468 -4.338 -27.600 29.835 hybrid contribution -0.357 0.620 1.289 1.474 sum 10.112 -3.718 -26.311 28.431 Atomic orbital electron populations 1.24086 0.95191 1.03219 0.96932 1.23272 0.97021 0.97933 1.03137 1.21027 0.92631 0.96462 0.89423 1.48112 1.07429 1.65735 1.10504 1.18753 0.93500 0.94833 0.78638 1.21707 1.42990 0.93046 1.00601 0.92788 1.25889 0.94359 1.03695 0.95141 1.70068 1.43375 1.37391 1.05879 0.85318 0.78255 0.78705 0.78230 1.18996 1.19338 1.20548 1.18895 0.82099 0.76360 0.89249 1.90699 1.57842 1.54229 1.44765 1.19877 0.98881 1.05007 0.93192 1.21057 0.92859 0.96667 0.96246 1.20861 1.02032 1.02004 0.91863 1.18033 0.92995 0.95767 0.84642 1.46062 1.29980 1.41888 1.10281 1.22749 0.86368 0.99494 0.95457 1.22685 1.03096 0.96706 0.92928 1.22425 1.00255 1.02333 0.93409 1.22194 0.83419 0.77337 0.88020 1.90621 1.27838 1.43096 1.81742 1.21516 0.96777 1.03826 0.97183 1.21614 0.99141 0.95614 0.92201 0.87874 0.86143 0.86952 0.90452 0.87849 0.95771 0.98300 0.92312 0.85229 0.81400 0.87995 0.88172 0.88784 0.85422 0.86403 0.85526 0.83020 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 14.32 67.78 0.97 -3.30 16 2 C -0.19 -6.13 8.47 25.65 0.22 -5.92 16 3 C 0.13 4.62 5.33 85.63 0.46 5.08 16 4 N -0.59 -27.78 2.45 -834.20 -2.05 -29.82 16 5 C 0.26 15.07 5.20 85.63 0.45 15.52 16 6 C -0.54 -32.55 9.39 25.60 0.24 -32.31 16 7 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 8 C 0.01 0.48 5.46 84.66 0.46 0.95 16 9 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 10 Si 0.97 45.66 29.54 68.60 2.03 47.68 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 C 0.54 25.88 7.27 86.71 0.63 26.51 16 15 O -0.59 -33.66 16.53 -3.97 -0.07 -33.73 16 16 C -0.17 -6.07 5.13 -20.08 -0.10 -6.18 16 17 C -0.05 -1.51 9.67 22.50 0.22 -1.29 16 18 C -0.15 -3.31 9.38 22.35 0.21 -3.11 16 19 C 0.18 4.31 6.59 38.36 0.25 4.57 16 20 N -0.56 -9.55 3.12 -627.66 -1.96 -11.51 16 21 C 0.08 0.51 6.24 86.83 0.54 1.05 16 22 C -0.12 -0.16 7.18 31.65 0.23 0.07 16 23 C -0.14 -0.97 6.86 30.59 0.21 -0.76 16 24 C 0.50 9.30 7.92 87.90 0.70 10.00 16 25 O -0.55 -15.42 14.80 -3.04 -0.04 -15.47 16 26 C -0.17 -4.92 9.26 22.35 0.21 -4.71 16 27 C -0.07 -2.11 7.36 22.50 0.17 -1.94 16 28 H 0.10 2.74 7.84 -2.91 -0.02 2.72 16 29 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 30 H 0.11 3.41 6.83 -2.91 -0.02 3.39 16 31 H 0.08 2.88 7.79 -2.39 -0.02 2.86 16 32 H 0.10 3.38 4.90 -2.39 -0.01 3.37 16 33 H 0.02 1.40 8.07 -2.39 -0.02 1.39 16 34 H 0.00 -0.07 7.35 -2.39 -0.02 -0.09 16 35 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 37 H 0.17 2.37 6.99 -2.91 -0.02 2.35 16 38 H 0.10 0.45 7.69 -2.39 -0.02 0.43 16 39 H 0.10 0.34 8.14 -2.39 -0.02 0.33 16 40 H 0.09 0.05 8.14 -2.39 -0.02 0.04 16 41 H 0.13 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.15 4.53 5.25 -2.91 -0.02 4.52 16 45 H 0.14 4.37 4.00 -2.91 -0.01 4.36 16 Total: -1.00 -85.11 371.72 5.25 -79.86 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.01 Total: 15.83 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 6.05 Total: 4.23 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -3.72 Total: -98.41 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -0.11 Total: -49.20 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -85.11 5.25 -79.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292475139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.904 kcal (2) G-P(sol) polarization free energy of solvation -85.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds