Wall clock time and date at job start Tue Mar 31 2020 16:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 120.00129 * 2 1 4 4 N 1.46498 * 109.47222 * 126.42633 * 3 2 1 5 5 C 1.46493 * 120.00274 * 277.58763 * 4 3 2 6 6 C 1.50697 * 109.47128 * 269.99775 * 5 4 3 7 7 H 1.08004 * 119.99983 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00436 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99333 * 0.02562 * 8 6 5 10 10 Si 1.86791 * 120.00272 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47293 * 90.00243 * 10 8 6 12 12 H 1.48503 * 109.47118 * 210.00263 * 10 8 6 13 13 H 1.48498 * 109.47109 * 329.99885 * 10 8 6 14 14 C 1.34782 * 119.99732 * 97.58748 * 4 3 2 15 15 O 1.21543 * 119.99857 * 186.23684 * 14 4 3 16 16 C 1.47858 * 119.99775 * 6.23156 * 14 4 3 17 17 C 1.39616 * 120.11261 * 318.80746 * 16 14 4 18 18 C 1.37981 * 119.99375 * 180.02562 * 17 16 14 19 19 C 1.38258 * 120.22385 * 359.74445 * 18 17 16 20 20 C 1.38951 * 120.22315 * 0.50796 * 19 18 17 21 21 N 1.39951 * 120.00007 * 179.76614 * 20 19 18 22 22 C 1.46765 * 124.35142 * 354.06728 * 21 20 19 23 23 C 1.54472 * 105.47615 * 162.98411 * 22 21 20 24 24 C 1.54628 * 101.76551 * 25.41371 * 23 22 21 25 25 C 1.34420 * 124.34777 * 174.06523 * 21 20 19 26 26 O 1.21287 * 124.94533 * 0.67405 * 25 21 20 27 27 C 1.38636 * 119.99704 * 359.49299 * 20 19 18 28 28 H 1.07997 * 120.00508 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99998 * 359.97438 * 1 2 3 30 30 H 1.07994 * 119.99973 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46534 * 6.42854 * 3 2 1 32 32 H 1.08995 * 109.46872 * 246.43030 * 3 2 1 33 33 H 1.09000 * 109.47193 * 30.00098 * 5 4 3 34 34 H 1.09001 * 109.46967 * 150.00235 * 5 4 3 35 35 H 0.96998 * 120.00108 * 179.97438 * 9 8 6 36 36 H 1.07997 * 120.00533 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.88923 * 180.02562 * 18 17 16 38 38 H 1.08002 * 119.88577 * 180.26121 * 19 18 17 39 39 H 1.09000 * 110.24207 * 43.97886 * 22 21 20 40 40 H 1.09002 * 110.24078 * 281.98690 * 22 21 20 41 41 H 1.09007 * 110.97005 * 267.29963 * 23 22 21 42 42 H 1.08997 * 111.00586 * 143.54630 * 23 22 21 43 43 H 1.09000 * 110.49094 * 216.52475 * 24 23 22 44 44 H 1.08996 * 110.48871 * 93.87962 * 24 23 22 45 45 H 1.07999 * 120.10735 * 180.23014 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0180 1.3180 1.1113 5 6 2.5687 1.6770 2.4587 6 6 2.7065 3.1648 2.6543 7 1 3.0900 3.7814 1.8548 8 6 2.3430 3.7391 3.8541 9 7 1.8765 2.9882 4.8278 10 14 2.5131 5.5834 4.0963 11 1 1.2566 6.2555 3.6784 12 1 2.7762 5.8723 5.5290 13 1 3.6419 6.0886 3.2741 14 6 4.3095 0.9994 0.8941 15 8 5.0766 0.8993 1.8315 16 6 4.7930 0.7717 -0.4845 17 6 4.0084 0.0589 -1.3931 18 6 4.4622 -0.1527 -2.6789 19 6 5.6907 0.3437 -3.0739 20 6 6.4813 1.0500 -2.1756 21 7 7.7261 1.5462 -2.5789 22 6 8.3442 1.2723 -3.8816 23 6 9.4474 2.3409 -4.0472 24 6 9.7728 2.6888 -2.5761 25 6 8.5093 2.3349 -1.8230 26 8 8.2441 2.7048 -0.6987 27 6 6.0344 1.2679 -0.8814 28 1 -0.5401 -0.9352 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3607 2.1304 0.1151 32 1 2.6011 1.4143 -0.9419 33 1 1.5246 1.3894 2.5822 34 1 3.1790 1.1555 3.1961 35 1 1.6212 3.3920 5.6719 36 1 3.0465 -0.3270 -1.0897 37 1 3.8538 -0.7040 -3.3805 38 1 6.0387 0.1786 -4.0828 39 1 7.6050 1.3668 -4.6771 40 1 8.7818 0.2740 -3.8890 41 1 9.0686 3.2134 -4.5797 42 1 10.3200 1.9266 -4.5522 43 1 9.9922 3.7516 -2.4749 44 1 10.6103 2.0897 -2.2187 45 1 6.6458 1.8198 -0.1829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292513878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:28 Heat of formation + Delta-G solvation = 5.444114 kcal Electronic energy + Delta-G solvation = -27825.116351 eV Core-core repulsion = 24002.092133 eV Total energy + Delta-G solvation = -3823.024219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22842 -39.68515 -37.80385 -36.71866 -35.78098 -33.45262 -33.05892 -32.04351 -31.01260 -29.31552 -28.06320 -27.39423 -25.63352 -24.05623 -23.26003 -22.62618 -21.39175 -20.17686 -20.05863 -18.59962 -17.49139 -17.06312 -16.67646 -16.37124 -16.02468 -15.59148 -15.44793 -14.77836 -14.47680 -14.38276 -14.15414 -14.01589 -13.87096 -13.59269 -13.42779 -13.11501 -12.97402 -12.71306 -12.53761 -12.05645 -11.94541 -11.72193 -11.55244 -11.45116 -11.34007 -11.17893 -11.04175 -10.79644 -10.55212 -10.28427 -10.13003 -9.70902 -9.59391 -9.17322 -9.03210 -8.76854 -8.37711 -7.94503 -7.64460 -5.98809 -4.03270 1.07467 1.37180 2.42022 2.44659 2.57814 3.34650 3.39529 3.41756 3.48369 3.85737 3.93274 4.01812 4.17051 4.36577 4.50169 4.59535 4.83447 4.89333 4.98974 5.06529 5.15278 5.26069 5.28353 5.29490 5.35475 5.37281 5.40576 5.51282 5.52216 5.54279 5.71824 5.95366 6.04109 6.12047 6.25441 6.37782 6.41185 6.60418 6.79959 6.90409 6.93503 7.05907 7.16183 7.50930 7.59489 7.90001 7.98154 8.28949 8.42458 8.94108 9.10734 9.61525 11.09357 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.003792 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.055962 B = 7382.740574 C = 9198.954991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.173 4.173 3 C 0.122 3.878 4 N -0.585 5.585 5 C 0.247 3.753 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.547 3.453 15 O -0.530 6.530 16 C -0.085 4.085 17 C -0.131 4.131 18 C -0.101 4.101 19 C -0.148 4.148 20 C 0.154 3.846 21 N -0.561 5.561 22 C 0.097 3.903 23 C -0.131 4.131 24 C -0.152 4.152 25 C 0.508 3.492 26 O -0.496 6.496 27 C -0.107 4.107 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.263 0.737 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.189 -6.332 -24.370 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.192 4.192 3 C -0.001 4.001 4 N -0.315 5.315 5 C 0.128 3.872 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.334 3.666 15 O -0.407 6.407 16 C -0.089 4.089 17 C -0.150 4.150 18 C -0.120 4.120 19 C -0.169 4.169 20 C 0.061 3.939 21 N -0.286 5.286 22 C -0.026 4.026 23 C -0.169 4.169 24 C -0.193 4.193 25 C 0.297 3.703 26 O -0.369 6.369 27 C -0.127 4.127 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.162 0.838 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.404 -6.134 -23.016 25.609 hybrid contribution -0.055 0.918 0.091 0.924 sum 9.349 -5.216 -22.925 25.302 Atomic orbital electron populations 1.23826 0.95736 1.01854 0.99932 1.23399 0.96389 0.98957 1.00475 1.20943 0.92829 0.95259 0.91113 1.48112 1.06622 1.65435 1.11342 1.19309 0.95510 0.95733 0.76635 1.21459 1.43106 0.92562 0.99522 0.92401 1.24920 0.95075 0.98410 0.95594 1.69937 1.43550 1.35342 1.04485 0.86504 0.78377 0.85189 0.77451 1.20643 1.21054 1.19819 1.18174 0.82758 0.78105 0.87595 1.90764 1.54889 1.51267 1.43771 1.20141 0.94696 0.99113 0.94966 1.21942 1.00518 0.99215 0.93349 1.20830 0.95317 0.99684 0.96148 1.20800 0.95514 1.01822 0.98742 1.17605 0.84923 0.97680 0.93648 1.45773 1.17134 1.48094 1.17607 1.22229 0.96011 0.99806 0.84532 1.22615 0.98814 0.99245 0.96199 1.22343 0.96595 1.05037 0.95282 1.21161 0.85723 0.77649 0.85816 1.90754 1.75079 1.53506 1.17585 1.21672 0.95909 1.00296 0.94871 0.88642 0.88190 0.87365 0.89740 0.89348 0.94710 0.93625 0.92749 0.83778 0.85252 0.85771 0.89547 0.90135 0.89594 0.88650 0.87460 0.87309 0.82007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.01 0.42 -1.90 16 2 C -0.17 -2.56 8.31 -36.02 -0.30 -2.86 16 3 C 0.12 2.14 5.33 -5.19 -0.03 2.11 16 4 N -0.58 -13.36 2.45 -177.55 -0.43 -13.79 16 5 C 0.25 6.78 5.22 -5.20 -0.03 6.75 16 6 C -0.53 -15.64 9.39 -34.44 -0.32 -15.96 16 7 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 8 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 9 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 10 Si 0.90 22.72 29.54 -169.99 -5.02 17.70 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.55 12.90 7.32 -12.32 -0.09 12.81 16 15 O -0.53 -14.87 16.49 5.33 0.09 -14.78 16 16 C -0.09 -1.60 5.24 -104.99 -0.55 -2.16 16 17 C -0.13 -1.89 7.37 -39.16 -0.29 -2.18 16 18 C -0.10 -1.14 10.02 -39.67 -0.40 -1.54 16 19 C -0.15 -1.65 9.41 -39.31 -0.37 -2.02 16 20 C 0.15 2.20 6.59 -83.74 -0.55 1.65 16 21 N -0.56 -6.59 3.14 -112.31 -0.35 -6.94 16 22 C 0.10 0.60 6.51 -3.13 -0.02 0.58 16 23 C -0.13 -0.57 7.18 -25.10 -0.18 -0.75 16 24 C -0.15 -1.12 6.86 -26.74 -0.18 -1.31 16 25 C 0.51 6.76 7.92 -10.86 -0.09 6.67 16 26 O -0.50 -9.29 14.81 5.55 0.08 -9.21 16 27 C -0.11 -1.99 8.89 -38.98 -0.35 -2.34 16 28 H 0.10 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.10 1.30 7.85 -52.49 -0.41 0.89 16 30 H 0.11 1.50 6.95 -52.49 -0.36 1.14 16 31 H 0.08 1.52 7.78 -51.93 -0.40 1.12 16 32 H 0.09 1.38 4.82 -51.93 -0.25 1.13 16 33 H 0.03 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.05 1.41 7.34 -51.93 -0.38 1.03 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.14 1.92 3.53 -52.49 -0.19 1.74 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.95 6.72 -52.49 -0.35 0.60 16 39 H 0.09 0.41 7.22 -51.93 -0.37 0.03 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 42 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.16 3.57 5.24 -52.49 -0.28 3.29 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -38.36 370.85 -8.66 -47.02 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.92 Total: 1.74 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -3.42 Total: -0.70 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.05 Total: -47.35 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.17 Total: -23.99 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.36 -8.66 -47.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292513878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.466 kcal (2) G-P(sol) polarization free energy of solvation -38.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds