Wall clock time and date at job start Tue Mar 31 2020 16:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 120.00129 * 2 1 4 4 N 1.46498 * 109.47222 * 126.42633 * 3 2 1 5 5 C 1.46493 * 120.00274 * 277.58763 * 4 3 2 6 6 C 1.50697 * 109.47128 * 269.99775 * 5 4 3 7 7 H 1.08004 * 119.99983 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00436 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99333 * 0.02562 * 8 6 5 10 10 Si 1.86791 * 120.00272 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47293 * 90.00243 * 10 8 6 12 12 H 1.48503 * 109.47118 * 210.00263 * 10 8 6 13 13 H 1.48498 * 109.47109 * 329.99885 * 10 8 6 14 14 C 1.34782 * 119.99732 * 97.58748 * 4 3 2 15 15 O 1.21543 * 119.99857 * 186.23684 * 14 4 3 16 16 C 1.47858 * 119.99775 * 6.23156 * 14 4 3 17 17 C 1.39616 * 120.11261 * 318.80746 * 16 14 4 18 18 C 1.37981 * 119.99375 * 180.02562 * 17 16 14 19 19 C 1.38258 * 120.22385 * 359.74445 * 18 17 16 20 20 C 1.38951 * 120.22315 * 0.50796 * 19 18 17 21 21 N 1.39951 * 120.00007 * 179.76614 * 20 19 18 22 22 C 1.46765 * 124.35142 * 354.06728 * 21 20 19 23 23 C 1.54472 * 105.47615 * 162.98411 * 22 21 20 24 24 C 1.54628 * 101.76551 * 25.41371 * 23 22 21 25 25 C 1.34420 * 124.34777 * 174.06523 * 21 20 19 26 26 O 1.21287 * 124.94533 * 0.67405 * 25 21 20 27 27 C 1.38636 * 119.99704 * 359.49299 * 20 19 18 28 28 H 1.07997 * 120.00508 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99998 * 359.97438 * 1 2 3 30 30 H 1.07994 * 119.99973 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46534 * 6.42854 * 3 2 1 32 32 H 1.08995 * 109.46872 * 246.43030 * 3 2 1 33 33 H 1.09000 * 109.47193 * 30.00098 * 5 4 3 34 34 H 1.09001 * 109.46967 * 150.00235 * 5 4 3 35 35 H 0.96998 * 120.00108 * 179.97438 * 9 8 6 36 36 H 1.07997 * 120.00533 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.88923 * 180.02562 * 18 17 16 38 38 H 1.08002 * 119.88577 * 180.26121 * 19 18 17 39 39 H 1.09000 * 110.24207 * 43.97886 * 22 21 20 40 40 H 1.09002 * 110.24078 * 281.98690 * 22 21 20 41 41 H 1.09007 * 110.97005 * 267.29963 * 23 22 21 42 42 H 1.08997 * 111.00586 * 143.54630 * 23 22 21 43 43 H 1.09000 * 110.49094 * 216.52475 * 24 23 22 44 44 H 1.08996 * 110.48871 * 93.87962 * 24 23 22 45 45 H 1.07999 * 120.10735 * 180.23014 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0180 1.3180 1.1113 5 6 2.5687 1.6770 2.4587 6 6 2.7065 3.1648 2.6543 7 1 3.0900 3.7814 1.8548 8 6 2.3430 3.7391 3.8541 9 7 1.8765 2.9882 4.8278 10 14 2.5131 5.5834 4.0963 11 1 1.2566 6.2555 3.6784 12 1 2.7762 5.8723 5.5290 13 1 3.6419 6.0886 3.2741 14 6 4.3095 0.9994 0.8941 15 8 5.0766 0.8993 1.8315 16 6 4.7930 0.7717 -0.4845 17 6 4.0084 0.0589 -1.3931 18 6 4.4622 -0.1527 -2.6789 19 6 5.6907 0.3437 -3.0739 20 6 6.4813 1.0500 -2.1756 21 7 7.7261 1.5462 -2.5789 22 6 8.3442 1.2723 -3.8816 23 6 9.4474 2.3409 -4.0472 24 6 9.7728 2.6888 -2.5761 25 6 8.5093 2.3349 -1.8230 26 8 8.2441 2.7048 -0.6987 27 6 6.0344 1.2679 -0.8814 28 1 -0.5401 -0.9352 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3607 2.1304 0.1151 32 1 2.6011 1.4143 -0.9419 33 1 1.5246 1.3894 2.5822 34 1 3.1790 1.1555 3.1961 35 1 1.6212 3.3920 5.6719 36 1 3.0465 -0.3270 -1.0897 37 1 3.8538 -0.7040 -3.3805 38 1 6.0387 0.1786 -4.0828 39 1 7.6050 1.3668 -4.6771 40 1 8.7818 0.2740 -3.8890 41 1 9.0686 3.2134 -4.5797 42 1 10.3200 1.9266 -4.5522 43 1 9.9922 3.7516 -2.4749 44 1 10.6103 2.0897 -2.2187 45 1 6.6458 1.8198 -0.1829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292513878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:27 Heat of formation + Delta-G solvation = -21.114467 kcal Electronic energy + Delta-G solvation = -27826.268018 eV Core-core repulsion = 24002.092133 eV Total energy + Delta-G solvation = -3824.175885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.18923 -41.19254 -39.14939 -37.71216 -37.47086 -35.26382 -34.11420 -33.77600 -32.28025 -30.42930 -29.36796 -28.64661 -27.13987 -25.78640 -24.27379 -23.96221 -22.45197 -21.38511 -21.15723 -19.93586 -18.79866 -18.66196 -17.98234 -17.65922 -17.37896 -17.18139 -16.63976 -16.35428 -16.09800 -15.62611 -15.49110 -14.99406 -14.80502 -14.59265 -14.51148 -14.42668 -14.37692 -14.15588 -13.64991 -13.50481 -13.36689 -13.04974 -12.98650 -12.74338 -12.65357 -12.58568 -12.33072 -12.30130 -12.14436 -12.00326 -11.74461 -11.18687 -10.85958 -10.72746 -10.70339 -10.35589 -10.03670 -9.57347 -8.98446 -8.29483 -6.44812 -0.10534 0.22185 1.27305 1.29500 1.33625 1.41562 1.44527 1.68788 1.85800 2.27719 2.39037 2.79312 2.99540 3.24998 3.49938 3.58612 3.94365 3.98907 4.02295 4.09418 4.11694 4.14271 4.20012 4.33928 4.40471 4.49313 4.61835 4.65281 4.79362 4.80541 4.88394 4.95833 5.03546 5.08325 5.09484 5.14593 5.19691 5.31701 5.39875 5.43123 5.46901 5.66912 5.69584 5.90438 5.94762 5.98505 6.04510 6.57267 6.64180 6.94202 7.16141 7.31522 8.78178 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.003792 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.055962 B = 7382.740574 C = 9198.954991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.193 4.193 3 C 0.120 3.880 4 N -0.588 5.588 5 C 0.265 3.735 6 C -0.552 4.552 7 H 0.046 0.954 8 C 0.012 3.988 9 N -0.924 5.924 10 Si 0.968 3.032 11 H -0.255 1.255 12 H -0.275 1.275 13 H -0.281 1.281 14 C 0.536 3.464 15 O -0.599 6.599 16 C -0.113 4.113 17 C -0.129 4.129 18 C -0.080 4.080 19 C -0.120 4.120 20 C 0.150 3.850 21 N -0.563 5.563 22 C 0.085 3.915 23 C -0.115 4.115 24 C -0.145 4.145 25 C 0.485 3.515 26 O -0.571 6.571 27 C -0.146 4.146 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.031 0.969 34 H -0.004 1.004 35 H 0.270 0.730 36 H 0.156 0.844 37 H 0.184 0.816 38 H 0.179 0.821 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.132 0.868 43 H 0.111 0.889 44 H 0.124 0.876 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.729 -7.143 -29.994 32.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.212 4.212 3 C -0.001 4.001 4 N -0.316 5.316 5 C 0.144 3.856 6 C -0.590 4.590 7 H 0.064 0.936 8 C -0.188 4.188 9 N -0.563 5.563 10 Si 0.792 3.208 11 H -0.180 1.180 12 H -0.200 1.200 13 H -0.206 1.206 14 C 0.326 3.674 15 O -0.482 6.482 16 C -0.117 4.117 17 C -0.148 4.148 18 C -0.098 4.098 19 C -0.140 4.140 20 C 0.056 3.944 21 N -0.286 5.286 22 C -0.034 4.034 23 C -0.152 4.152 24 C -0.185 4.185 25 C 0.276 3.724 26 O -0.450 6.450 27 C -0.168 4.168 28 H 0.142 0.858 29 H 0.119 0.881 30 H 0.137 0.863 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.049 0.951 34 H 0.014 0.986 35 H 0.079 0.921 36 H 0.173 0.827 37 H 0.201 0.799 38 H 0.197 0.803 39 H 0.132 0.868 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.150 0.850 43 H 0.129 0.871 44 H 0.142 0.858 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.913 -6.970 -28.745 30.892 hybrid contribution 0.086 1.108 1.767 2.087 sum 8.999 -5.862 -26.979 29.038 Atomic orbital electron populations 1.24095 0.95094 1.03272 0.96581 1.23208 0.96898 0.97645 1.03425 1.21213 0.91975 0.96961 0.89988 1.48105 1.07717 1.64746 1.11060 1.18738 0.94008 0.94319 0.78520 1.21673 1.43854 0.93537 0.99936 0.93568 1.25846 0.94253 1.03702 0.94989 1.70044 1.43727 1.37535 1.04971 0.85418 0.78938 0.78894 0.77583 1.17977 1.20004 1.20609 1.19117 0.82233 0.76655 0.89444 1.90692 1.56543 1.54453 1.46488 1.19735 0.96126 1.02894 0.92937 1.22090 1.00370 0.98287 0.94062 1.21431 0.95449 0.97920 0.94962 1.21401 0.94288 0.98337 1.00013 1.17771 0.86536 0.97796 0.92345 1.46141 1.16108 1.46899 1.19437 1.22758 0.97085 1.01531 0.82059 1.22698 0.99562 0.99269 0.93671 1.22428 0.93668 1.05525 0.96886 1.22428 0.87643 0.77016 0.85282 1.90729 1.76979 1.56232 1.21063 1.21398 0.96052 1.02413 0.96901 0.85756 0.88144 0.86294 0.90659 0.87212 0.95079 0.98630 0.92149 0.82681 0.79857 0.80334 0.86768 0.87976 0.88640 0.85011 0.87113 0.85764 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 14.32 67.78 0.97 -2.74 16 2 C -0.19 -5.54 8.31 25.65 0.21 -5.33 16 3 C 0.12 4.33 5.33 85.63 0.46 4.79 16 4 N -0.59 -29.05 2.45 -833.93 -2.04 -31.09 16 5 C 0.27 15.81 5.22 85.63 0.45 16.25 16 6 C -0.55 -34.90 9.39 25.60 0.24 -34.66 16 7 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 8 C 0.01 0.72 5.46 84.66 0.46 1.18 16 9 N -0.92 -58.77 13.29 21.45 0.28 -58.48 16 10 Si 0.97 48.18 29.54 68.60 2.03 50.20 16 11 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 14 C 0.54 27.95 7.32 86.79 0.64 28.58 16 15 O -0.60 -38.05 16.49 -3.85 -0.06 -38.11 16 16 C -0.11 -4.56 5.24 -20.10 -0.11 -4.66 16 17 C -0.13 -3.56 7.37 22.54 0.17 -3.39 16 18 C -0.08 -1.41 10.02 22.21 0.22 -1.18 16 19 C -0.12 -2.10 9.41 22.45 0.21 -1.89 16 20 C 0.15 4.17 6.59 38.11 0.25 4.42 16 21 N -0.56 -12.56 3.14 -627.81 -1.97 -14.53 16 22 C 0.09 0.66 6.51 86.83 0.56 1.22 16 23 C -0.11 -0.50 7.18 31.65 0.23 -0.27 16 24 C -0.15 -1.95 6.86 30.59 0.21 -1.74 16 25 C 0.48 13.60 7.92 87.90 0.70 14.30 16 26 O -0.57 -24.25 14.81 -3.05 -0.05 -24.30 16 27 C -0.15 -5.94 8.89 22.66 0.20 -5.74 16 28 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.10 2.44 7.85 -2.91 -0.02 2.41 16 30 H 0.12 3.17 6.95 -2.91 -0.02 3.15 16 31 H 0.08 2.80 7.78 -2.38 -0.02 2.78 16 32 H 0.11 3.43 4.82 -2.39 -0.01 3.42 16 33 H 0.03 1.84 8.07 -2.39 -0.02 1.82 16 34 H 0.00 -0.30 7.34 -2.39 -0.02 -0.32 16 35 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 36 H 0.16 3.88 3.53 -2.91 -0.01 3.87 16 37 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.18 1.26 6.72 -2.91 -0.02 1.24 16 39 H 0.11 0.30 7.22 -2.39 -0.02 0.28 16 40 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 42 H 0.13 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.11 5.69 5.24 -2.91 -0.02 5.67 16 Total: -1.00 -100.21 370.85 5.27 -94.93 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.01 Total: 12.24 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 6.07 Total: 9.14 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -3.73 Total: -104.10 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -0.11 Total: -62.41 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.20 kcal Total: -100.21 5.27 -94.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292513878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.818 kcal (2) G-P(sol) polarization free energy of solvation -100.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds