Wall clock time and date at job start Tue Mar 31 2020 16:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50694 * 119.99950 * 2 1 4 4 N 1.46500 * 109.47281 * 124.99983 * 3 2 1 5 5 C 1.46494 * 119.99698 * 265.59069 * 4 3 2 6 6 C 1.50702 * 109.47474 * 264.85455 * 5 4 3 7 7 H 1.07995 * 119.99668 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99905 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00414 * 359.97438 * 8 6 5 10 10 Si 1.86810 * 119.99710 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47247 * 59.99687 * 10 8 6 12 12 H 1.48506 * 109.46781 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46833 * 299.99540 * 10 8 6 14 14 C 1.34779 * 120.00075 * 85.59245 * 4 3 2 15 15 O 1.21359 * 120.00049 * 354.60723 * 14 4 3 16 16 C 1.49351 * 119.99727 * 174.88131 * 14 4 3 17 17 O 1.21375 * 120.00387 * 354.17444 * 16 14 4 18 18 N 1.34774 * 119.99869 * 174.17355 * 16 14 4 19 19 C 1.39725 * 120.00319 * 185.23614 * 18 16 14 20 20 C 1.38951 * 120.11658 * 143.74903 * 19 18 16 21 21 C 1.37951 * 119.85800 * 179.97438 * 20 19 18 22 22 C 1.38578 * 120.31666 * 0.02562 * 21 20 19 23 23 C 1.38287 * 119.97165 * 0.02562 * 22 21 20 24 24 C 1.38364 * 119.92530 * 359.74034 * 23 22 21 25 25 C 1.51384 * 109.75168 * 180.02562 * 23 22 21 26 26 C 1.54332 * 105.17438 * 342.79674 * 25 23 22 27 27 C 1.51400 * 130.29748 * 180.02562 * 22 21 20 28 28 H 1.07998 * 120.00018 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00144 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00144 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47414 * 4.99605 * 3 2 1 32 32 H 1.09004 * 109.47064 * 245.00013 * 3 2 1 33 33 H 1.08997 * 109.47350 * 24.85903 * 5 4 3 34 34 H 1.09010 * 109.47315 * 144.85515 * 5 4 3 35 35 H 0.96998 * 120.00485 * 179.97438 * 9 8 6 36 36 H 0.96999 * 119.99966 * 5.23461 * 18 16 14 37 37 H 1.08002 * 120.06673 * 0.02562 * 20 19 18 38 38 H 1.08000 * 119.84119 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.92208 * 180.25191 * 24 23 22 40 40 H 1.08996 * 110.30552 * 223.86697 * 25 23 22 41 41 H 1.09010 * 110.38459 * 101.76287 * 25 23 22 42 42 H 1.09005 * 110.82038 * 268.15365 * 26 25 23 43 43 H 1.09000 * 110.99775 * 144.68275 * 26 25 23 44 44 H 1.09004 * 110.30239 * 316.11255 * 27 22 21 45 45 H 1.09002 * 110.30277 * 78.25859 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5912 1.9524 2.3960 6 6 3.0755 3.3790 2.4321 7 1 3.6274 3.7832 1.5965 8 6 2.8138 4.1681 3.5320 9 7 2.1412 3.6761 4.5494 10 14 3.4135 5.9368 3.5765 11 1 2.8172 6.6902 2.4443 12 1 3.0055 6.5657 4.8585 13 1 4.8939 5.9605 3.4619 14 6 4.2198 0.7858 1.0089 15 8 4.5187 0.1863 -0.0031 16 6 5.2085 0.9132 2.1210 17 8 4.9478 1.5965 3.0896 18 7 6.3903 0.2693 2.0490 19 6 7.2693 0.2988 3.1347 20 6 8.0335 -0.8198 3.4437 21 6 8.9000 -0.7847 4.5165 22 6 9.0117 0.3609 5.2882 23 6 8.2518 1.4755 4.9841 24 6 7.3849 1.4468 3.9061 25 6 8.5552 2.5855 5.9678 26 6 9.2487 1.8912 7.1590 27 6 9.8768 0.6464 6.4975 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 1.5046 1.9353 2.4794 34 1 3.0282 1.3992 3.2275 35 1 1.9574 4.2312 5.3233 36 1 6.6307 -0.2146 1.2434 37 1 7.9498 -1.7146 2.8446 38 1 9.4936 -1.6544 4.7566 39 1 6.7944 2.3187 3.6663 40 1 7.6322 3.0644 6.2943 41 1 9.2228 3.3201 5.5173 42 1 8.5201 1.6010 7.9160 43 1 10.0186 2.5313 7.5899 44 1 9.8561 -0.1988 7.1854 45 1 10.9004 0.8587 6.1886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293246750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:05 Heat of formation + Delta-G solvation = -7.542703 kcal Electronic energy + Delta-G solvation = -27953.094291 eV Core-core repulsion = 24129.506922 eV Total energy + Delta-G solvation = -3823.587369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.64140 -39.64811 -38.09536 -36.18403 -35.58131 -33.61417 -33.14099 -32.06999 -31.01139 -28.48892 -27.56214 -27.17670 -26.19432 -23.83886 -22.91294 -22.19012 -20.75138 -20.49091 -19.89052 -19.08213 -17.28003 -16.70946 -16.56538 -15.98880 -15.68829 -15.48537 -15.20832 -14.90293 -14.77101 -14.50798 -14.24402 -13.61316 -13.44535 -13.14180 -12.99432 -12.83541 -12.69701 -12.39472 -12.27340 -11.86701 -11.63110 -11.57360 -11.43489 -11.17599 -11.13310 -11.01064 -10.92801 -10.85359 -10.64148 -10.49791 -10.03424 -9.77462 -9.69478 -9.22013 -8.71667 -8.51097 -8.28355 -7.95116 -7.73367 -6.02377 -4.04236 1.37103 1.58615 2.17384 2.42246 3.01720 3.31780 3.36009 3.38966 3.75547 4.01750 4.14228 4.44931 4.52291 4.63360 4.99799 5.00713 5.13213 5.19992 5.26813 5.33995 5.35242 5.46617 5.47544 5.64245 5.73245 5.78970 5.80015 5.83719 5.98091 6.06564 6.08845 6.17809 6.21211 6.24946 6.44935 6.56768 6.58877 6.68686 6.84680 6.85567 6.98203 7.22340 7.35216 7.38126 7.59239 7.85383 8.06184 8.18417 8.35418 8.65728 8.94660 9.57821 11.06668 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.004413 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.433393 B = 6343.303262 C = 8471.427573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.158 4.158 3 C 0.142 3.858 4 N -0.556 5.556 5 C 0.233 3.767 6 C -0.512 4.512 7 H 0.053 0.947 8 C 0.070 3.930 9 N -0.891 5.891 10 Si 0.892 3.108 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.508 3.492 15 O -0.560 6.560 16 C 0.485 3.515 17 O -0.426 6.426 18 N -0.663 5.663 19 C 0.157 3.843 20 C -0.148 4.148 21 C -0.092 4.092 22 C -0.122 4.122 23 C -0.076 4.076 24 C -0.106 4.106 25 C -0.085 4.085 26 C -0.120 4.120 27 C -0.076 4.076 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.033 0.967 34 H 0.061 0.939 35 H 0.262 0.738 36 H 0.415 0.585 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.142 0.858 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.555 -7.577 -0.305 12.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.177 4.177 3 C 0.020 3.980 4 N -0.285 5.285 5 C 0.114 3.886 6 C -0.551 4.551 7 H 0.072 0.928 8 C -0.132 4.132 9 N -0.530 5.530 10 Si 0.720 3.280 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.290 3.710 15 O -0.441 6.441 16 C 0.266 3.734 17 O -0.292 6.292 18 N -0.312 5.312 19 C 0.062 3.938 20 C -0.168 4.168 21 C -0.110 4.110 22 C -0.123 4.123 23 C -0.077 4.077 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.158 4.158 27 C -0.113 4.113 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.252 0.748 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.160 0.840 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.301 -7.268 0.074 12.607 hybrid contribution 0.300 0.714 -0.322 0.839 sum 10.601 -6.555 -0.248 12.466 Atomic orbital electron populations 1.23800 0.95722 1.01727 1.01307 1.23324 0.96082 0.99158 0.99181 1.20591 0.92150 0.95391 0.89870 1.48272 1.11332 1.52910 1.16005 1.19899 0.96263 0.93754 0.78694 1.21123 1.35665 0.95468 1.02818 0.92838 1.24780 0.94998 0.98248 0.95189 1.69901 1.39854 1.36558 1.06638 0.86666 0.79359 0.84839 0.77155 1.20399 1.21246 1.20267 1.19800 0.83587 0.80562 0.87037 1.90651 1.78898 1.43233 1.31313 1.20421 0.82684 0.81534 0.88714 1.91025 1.74934 1.32396 1.30866 1.43193 1.16845 1.54110 1.17085 1.17536 0.92317 0.93659 0.90285 1.20764 0.99913 0.96806 0.99316 1.20275 0.98845 0.97141 0.94759 1.20548 0.99153 0.94443 0.98151 1.20409 0.95672 0.95953 0.95633 1.20855 0.98335 0.98077 0.95354 1.21055 1.01221 0.96107 0.93780 1.22282 0.99743 0.96404 0.97332 1.20974 0.98036 0.98169 0.94158 0.88717 0.88330 0.87520 0.89098 0.90013 0.94860 0.92145 0.92805 0.74794 0.85654 0.86212 0.83994 0.90239 0.90318 0.90961 0.90782 0.91097 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 14.32 29.02 0.42 -2.18 16 2 C -0.16 -2.52 9.81 -36.03 -0.35 -2.87 16 3 C 0.14 2.55 5.74 -5.20 -0.03 2.52 16 4 N -0.56 -11.81 2.46 -176.99 -0.44 -12.25 16 5 C 0.23 5.77 4.73 -5.20 -0.02 5.75 16 6 C -0.51 -13.81 7.74 -34.44 -0.27 -14.07 16 7 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 8 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 9 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 10 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.51 10.57 7.64 -11.63 -0.09 10.48 16 15 O -0.56 -11.47 16.20 5.49 0.09 -11.38 16 16 C 0.49 9.97 7.53 -11.63 -0.09 9.88 16 17 O -0.43 -10.16 9.66 5.48 0.05 -10.10 16 18 N -0.66 -11.16 5.32 -10.32 -0.05 -11.21 16 19 C 0.16 2.57 6.27 -83.79 -0.53 2.04 16 20 C -0.15 -1.99 9.97 -39.42 -0.39 -2.39 16 21 C -0.09 -1.15 10.03 -39.56 -0.40 -1.55 16 22 C -0.12 -1.63 6.14 -104.13 -0.64 -2.27 16 23 C -0.08 -1.18 6.13 -104.22 -0.64 -1.81 16 24 C -0.11 -1.89 8.69 -39.33 -0.34 -2.23 16 25 C -0.08 -1.11 6.77 -26.85 -0.18 -1.29 16 26 C -0.12 -1.25 7.08 -25.34 -0.18 -1.43 16 27 C -0.08 -0.79 6.77 -26.85 -0.18 -0.97 16 28 H 0.09 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.10 1.30 7.84 -52.49 -0.41 0.89 16 30 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.09 1.59 7.69 -51.93 -0.40 1.19 16 32 H 0.08 1.41 7.64 -51.93 -0.40 1.01 16 33 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 34 H 0.06 1.64 5.92 -51.92 -0.31 1.34 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.42 5.98 8.30 -40.82 -0.34 5.65 16 37 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.14 2.93 6.30 -52.48 -0.33 2.60 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 377.55 15.07 5.69 5.69 Total: -1.00 -30.88 377.55 -9.33 -40.21 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.37 Total: 8.08 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -4.01 Total: -0.56 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.25 Total: -48.44 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: 0.14 Total: -21.48 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.88 -9.33 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293246750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.671 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds