Wall clock time and date at job start Tue Mar 31 2020 16:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50694 * 119.99950 * 2 1 4 4 N 1.46500 * 109.47281 * 124.99983 * 3 2 1 5 5 C 1.46494 * 119.99698 * 265.59069 * 4 3 2 6 6 C 1.50702 * 109.47474 * 264.85455 * 5 4 3 7 7 H 1.07995 * 119.99668 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99905 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00414 * 359.97438 * 8 6 5 10 10 Si 1.86810 * 119.99710 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47247 * 59.99687 * 10 8 6 12 12 H 1.48506 * 109.46781 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46833 * 299.99540 * 10 8 6 14 14 C 1.34779 * 120.00075 * 85.59245 * 4 3 2 15 15 O 1.21359 * 120.00049 * 354.60723 * 14 4 3 16 16 C 1.49351 * 119.99727 * 174.88131 * 14 4 3 17 17 O 1.21375 * 120.00387 * 354.17444 * 16 14 4 18 18 N 1.34774 * 119.99869 * 174.17355 * 16 14 4 19 19 C 1.39725 * 120.00319 * 185.23614 * 18 16 14 20 20 C 1.38951 * 120.11658 * 143.74903 * 19 18 16 21 21 C 1.37951 * 119.85800 * 179.97438 * 20 19 18 22 22 C 1.38578 * 120.31666 * 0.02562 * 21 20 19 23 23 C 1.38287 * 119.97165 * 0.02562 * 22 21 20 24 24 C 1.38364 * 119.92530 * 359.74034 * 23 22 21 25 25 C 1.51384 * 109.75168 * 180.02562 * 23 22 21 26 26 C 1.54332 * 105.17438 * 342.79674 * 25 23 22 27 27 C 1.51400 * 130.29748 * 180.02562 * 22 21 20 28 28 H 1.07998 * 120.00018 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00144 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00144 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47414 * 4.99605 * 3 2 1 32 32 H 1.09004 * 109.47064 * 245.00013 * 3 2 1 33 33 H 1.08997 * 109.47350 * 24.85903 * 5 4 3 34 34 H 1.09010 * 109.47315 * 144.85515 * 5 4 3 35 35 H 0.96998 * 120.00485 * 179.97438 * 9 8 6 36 36 H 0.96999 * 119.99966 * 5.23461 * 18 16 14 37 37 H 1.08002 * 120.06673 * 0.02562 * 20 19 18 38 38 H 1.08000 * 119.84119 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.92208 * 180.25191 * 24 23 22 40 40 H 1.08996 * 110.30552 * 223.86697 * 25 23 22 41 41 H 1.09010 * 110.38459 * 101.76287 * 25 23 22 42 42 H 1.09005 * 110.82038 * 268.15365 * 26 25 23 43 43 H 1.09000 * 110.99775 * 144.68275 * 26 25 23 44 44 H 1.09004 * 110.30239 * 316.11255 * 27 22 21 45 45 H 1.09002 * 110.30277 * 78.25859 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5912 1.9524 2.3960 6 6 3.0755 3.3790 2.4321 7 1 3.6274 3.7832 1.5965 8 6 2.8138 4.1681 3.5320 9 7 2.1412 3.6761 4.5494 10 14 3.4135 5.9368 3.5765 11 1 2.8172 6.6902 2.4443 12 1 3.0055 6.5657 4.8585 13 1 4.8939 5.9605 3.4619 14 6 4.2198 0.7858 1.0089 15 8 4.5187 0.1863 -0.0031 16 6 5.2085 0.9132 2.1210 17 8 4.9478 1.5965 3.0896 18 7 6.3903 0.2693 2.0490 19 6 7.2693 0.2988 3.1347 20 6 8.0335 -0.8198 3.4437 21 6 8.9000 -0.7847 4.5165 22 6 9.0117 0.3609 5.2882 23 6 8.2518 1.4755 4.9841 24 6 7.3849 1.4468 3.9061 25 6 8.5552 2.5855 5.9678 26 6 9.2487 1.8912 7.1590 27 6 9.8768 0.6464 6.4975 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 1.5046 1.9353 2.4794 34 1 3.0282 1.3992 3.2275 35 1 1.9574 4.2312 5.3233 36 1 6.6307 -0.2146 1.2434 37 1 7.9498 -1.7146 2.8446 38 1 9.4936 -1.6544 4.7566 39 1 6.7944 2.3187 3.6663 40 1 7.6322 3.0644 6.2943 41 1 9.2228 3.3201 5.5173 42 1 8.5201 1.6010 7.9160 43 1 10.0186 2.5313 7.5899 44 1 9.8561 -0.1988 7.1854 45 1 10.9004 0.8587 6.1886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293246750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:04 Heat of formation + Delta-G solvation = -24.705549 kcal Electronic energy + Delta-G solvation = -27953.838528 eV Core-core repulsion = 24129.506922 eV Total energy + Delta-G solvation = -3824.331606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.11316 -40.94479 -39.59062 -37.70820 -36.95537 -35.10318 -34.67186 -33.82680 -32.13248 -29.63651 -29.45194 -28.37467 -27.58024 -25.50704 -24.55492 -23.49238 -21.75646 -21.67875 -21.24809 -20.51755 -18.93569 -18.52148 -18.18884 -17.42669 -16.99463 -16.91136 -16.55311 -16.34598 -16.09089 -15.99442 -15.83048 -15.02316 -14.76614 -14.46870 -14.32937 -14.24392 -14.07399 -13.72971 -13.68154 -13.53282 -13.09163 -12.95381 -12.81529 -12.68106 -12.48665 -12.40843 -12.28292 -12.03548 -11.98599 -11.95245 -11.80398 -11.71148 -10.98898 -10.64639 -10.48728 -10.12879 -9.71179 -9.66879 -8.96428 -8.15650 -6.23374 0.08814 0.43183 0.65177 1.12551 1.35650 1.38343 1.44871 1.62250 2.19107 2.38909 2.65326 2.79291 3.18351 3.34198 3.57557 3.67884 3.99998 4.11034 4.14921 4.17250 4.19022 4.32018 4.43529 4.43867 4.60386 4.73933 4.77722 4.78910 4.85399 4.94584 4.98655 5.00581 5.03717 5.18074 5.24258 5.31997 5.36436 5.37433 5.43884 5.54856 5.65921 5.72000 5.72916 5.82379 6.05790 6.08805 6.12824 6.28868 6.75161 6.81770 7.07250 7.41913 8.92801 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.004413 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.433393 B = 6343.303262 C = 8471.427573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.184 4.184 3 C 0.140 3.860 4 N -0.561 5.561 5 C 0.254 3.746 6 C -0.514 4.514 7 H 0.044 0.956 8 C 0.023 3.977 9 N -0.922 5.922 10 Si 0.948 3.052 11 H -0.265 1.265 12 H -0.280 1.280 13 H -0.282 1.282 14 C 0.506 3.494 15 O -0.556 6.556 16 C 0.482 3.518 17 O -0.469 6.469 18 N -0.645 5.645 19 C 0.128 3.872 20 C -0.138 4.138 21 C -0.086 4.086 22 C -0.117 4.117 23 C -0.101 4.101 24 C -0.135 4.135 25 C -0.091 4.091 26 C -0.114 4.114 27 C -0.072 4.072 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.022 0.978 34 H 0.034 0.966 35 H 0.263 0.737 36 H 0.427 0.573 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.323 -9.045 -0.093 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.203 4.203 3 C 0.018 3.982 4 N -0.291 5.291 5 C 0.134 3.866 6 C -0.552 4.552 7 H 0.062 0.938 8 C -0.176 4.176 9 N -0.562 5.562 10 Si 0.774 3.226 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.208 1.208 14 C 0.289 3.711 15 O -0.437 6.437 16 C 0.264 3.736 17 O -0.339 6.339 18 N -0.294 5.294 19 C 0.035 3.965 20 C -0.158 4.158 21 C -0.105 4.105 22 C -0.118 4.118 23 C -0.102 4.102 24 C -0.156 4.156 25 C -0.128 4.128 26 C -0.151 4.151 27 C -0.108 4.108 28 H 0.138 0.862 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.266 0.734 37 H 0.173 0.827 38 H 0.178 0.822 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.093 -8.765 0.239 14.937 hybrid contribution -0.204 1.095 -0.414 1.189 sum 11.889 -7.670 -0.176 14.149 Atomic orbital electron populations 1.24071 0.94950 1.03276 0.97610 1.23139 0.96774 0.97828 1.02525 1.20761 0.91882 0.96859 0.88667 1.48223 1.12199 1.52832 1.15814 1.19361 0.94870 0.92665 0.79688 1.21287 1.34963 0.96546 1.02443 0.93760 1.25495 0.95224 1.01989 0.94927 1.70005 1.41145 1.37886 1.07161 0.85772 0.78405 0.80678 0.77755 1.18988 1.20505 1.20839 1.19896 0.83582 0.80470 0.87187 1.90634 1.78826 1.43099 1.31132 1.20505 0.83579 0.81446 0.88085 1.91019 1.75966 1.34583 1.32325 1.43009 1.15689 1.52880 1.17840 1.17773 0.93521 0.94639 0.90595 1.21111 0.98570 0.96434 0.99654 1.20763 0.98137 0.98061 0.93505 1.21058 0.98336 0.93607 0.98790 1.20725 0.95956 0.98016 0.95482 1.20714 0.99669 0.97637 0.97556 1.21165 1.00733 0.96099 0.94781 1.22311 1.00094 0.96783 0.95948 1.21069 0.98237 0.98599 0.92944 0.86192 0.87636 0.87857 0.89018 0.89604 0.96028 0.94790 0.92812 0.73437 0.82700 0.82154 0.88281 0.92617 0.89506 0.91240 0.88151 0.88931 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 14.32 67.78 0.97 -3.21 16 2 C -0.18 -5.76 9.81 25.65 0.25 -5.51 16 3 C 0.14 5.06 5.74 85.63 0.49 5.55 16 4 N -0.56 -24.70 2.46 -832.22 -2.05 -26.75 16 5 C 0.25 13.24 4.73 85.63 0.40 13.64 16 6 C -0.51 -28.85 7.74 25.60 0.20 -28.65 16 7 H 0.04 2.51 7.81 -2.91 -0.02 2.49 16 8 C 0.02 1.31 5.46 84.65 0.46 1.77 16 9 N -0.92 -55.07 13.29 21.45 0.28 -54.79 16 10 Si 0.95 45.37 29.54 68.60 2.03 47.40 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 14 C 0.51 21.76 7.64 87.24 0.67 22.43 16 15 O -0.56 -22.94 16.20 -3.28 -0.05 -22.99 16 16 C 0.48 20.90 7.53 87.24 0.66 21.55 16 17 O -0.47 -24.07 9.66 -3.32 -0.03 -24.10 16 18 N -0.64 -22.37 5.32 -304.93 -1.62 -23.99 16 19 C 0.13 4.30 6.27 38.19 0.24 4.54 16 20 C -0.14 -3.45 9.97 22.37 0.22 -3.23 16 21 C -0.09 -1.89 10.03 22.28 0.22 -1.66 16 22 C -0.12 -2.88 6.14 -19.55 -0.12 -3.00 16 23 C -0.10 -3.20 6.13 -19.60 -0.12 -3.32 16 24 C -0.14 -5.15 8.69 22.43 0.19 -4.96 16 25 C -0.09 -2.43 6.77 30.52 0.21 -2.22 16 26 C -0.11 -2.15 7.08 31.49 0.22 -1.92 16 27 C -0.07 -1.23 6.77 30.52 0.21 -1.02 16 28 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 29 H 0.11 2.60 7.84 -2.91 -0.02 2.58 16 30 H 0.10 3.30 8.06 -2.91 -0.02 3.28 16 31 H 0.09 3.24 7.69 -2.39 -0.02 3.22 16 32 H 0.09 2.99 7.64 -2.38 -0.02 2.97 16 33 H 0.02 1.17 8.03 -2.39 -0.02 1.15 16 34 H 0.03 1.98 5.92 -2.38 -0.01 1.96 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.43 12.32 8.30 -92.71 -0.77 11.55 16 37 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 38 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.10 4.57 6.30 -2.91 -0.02 4.55 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -70.66 377.55 4.17 -66.49 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.24 Total: 27.94 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 5.38 Total: 10.79 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -3.39 Total: -105.53 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -0.09 Total: -47.09 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.66 4.17 -66.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293246750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.788 kcal (2) G-P(sol) polarization free energy of solvation -70.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds