Wall clock time and date at job start Tue Mar 31 2020 16:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00604 * 2 1 4 4 N 1.46498 * 109.47482 * 124.99699 * 3 2 1 5 5 C 1.46493 * 120.00274 * 274.77550 * 4 3 2 6 6 C 1.50705 * 109.47056 * 276.13525 * 5 4 3 7 7 H 1.07999 * 119.99926 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99919 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00084 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00170 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47429 * 89.99512 * 10 8 6 12 12 H 1.48493 * 109.47361 * 210.00097 * 10 8 6 13 13 H 1.48508 * 109.47059 * 329.99864 * 10 8 6 14 14 C 1.34778 * 119.99571 * 94.77507 * 4 3 2 15 15 O 1.21551 * 120.00413 * 354.65259 * 14 4 3 16 16 C 1.47859 * 119.99643 * 174.64888 * 14 4 3 17 17 C 1.39614 * 120.11468 * 311.78221 * 16 14 4 18 18 C 1.37984 * 119.99450 * 179.97438 * 17 16 14 19 19 C 1.38250 * 120.22519 * 359.97438 * 18 17 16 20 20 C 1.38947 * 120.22073 * 0.02562 * 19 18 17 21 21 N 1.39957 * 119.99713 * 179.97438 * 20 19 18 22 22 C 1.34772 * 120.00266 * 213.52515 * 21 20 19 23 23 O 1.21288 * 120.00024 * 5.29857 * 22 21 20 24 24 C 1.50696 * 120.00228 * 185.28898 * 22 21 20 25 25 C 1.53005 * 117.50212 * 248.62409 * 24 22 21 26 26 C 1.52996 * 60.00107 * 252.51130 * 25 24 22 27 27 C 1.38632 * 120.00240 * 359.97438 * 20 19 18 28 28 H 1.08001 * 119.99505 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00135 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99709 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47022 * 4.99629 * 3 2 1 32 32 H 1.09002 * 109.47015 * 245.00191 * 3 2 1 33 33 H 1.08997 * 109.47127 * 36.13105 * 5 4 3 34 34 H 1.08994 * 109.47362 * 156.13537 * 5 4 3 35 35 H 0.96996 * 120.00138 * 179.97438 * 9 8 6 36 36 H 1.08003 * 119.99974 * 359.97438 * 17 16 14 37 37 H 1.08008 * 119.88328 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.88955 * 179.71993 * 19 18 17 39 39 H 0.97006 * 120.00156 * 33.53318 * 21 20 19 40 40 H 1.09005 * 115.55117 * 34.33554 * 24 22 21 41 41 H 1.08997 * 117.49547 * 0.02562 * 25 24 22 42 42 H 1.09000 * 117.49414 * 145.02132 * 25 24 22 43 43 H 1.09006 * 117.50044 * 252.50821 * 26 25 24 44 44 H 1.08998 * 117.51917 * 107.47911 * 26 25 24 45 45 H 1.08004 * 120.10649 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5299 1.7668 2.4511 6 6 2.5789 3.2710 2.5301 7 1 2.9218 3.8454 1.6823 8 6 2.1859 3.9138 3.6849 9 7 2.2291 5.2264 3.7541 10 14 1.5935 2.9202 5.1516 11 1 2.7484 2.5892 6.0244 12 1 0.6035 3.7158 5.9211 13 1 0.9574 1.6656 4.6753 14 6 4.2766 0.9562 0.9581 15 8 4.6384 0.5036 -0.1104 16 6 5.2438 1.0949 2.0679 17 6 5.3265 2.2933 2.7794 18 6 6.2297 2.4198 3.8149 19 6 7.0544 1.3627 4.1521 20 6 6.9798 0.1659 3.4501 21 7 7.8173 -0.9010 3.7951 22 6 8.2688 -1.7391 2.8411 23 8 8.0292 -1.5144 1.6735 24 6 9.0716 -2.9553 3.2249 25 6 10.5520 -2.9754 2.8389 26 6 9.5556 -3.8675 2.0959 27 6 6.0758 0.0286 2.4081 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3588 2.1316 0.0895 32 1 2.6214 1.4024 -0.9314 33 1 1.5055 1.4281 2.6059 34 1 3.1735 1.3414 3.2210 35 1 1.9523 5.6787 4.5663 36 1 4.6837 3.1212 2.5192 37 1 6.2925 3.3478 4.3638 38 1 7.7625 1.4691 4.9606 39 1 8.0728 -1.0374 4.7209 40 1 8.7903 -3.4263 4.1668 41 1 10.9454 -2.1087 2.3077 42 1 11.2450 -3.4595 3.5271 43 1 9.5931 -4.9385 2.2952 44 1 9.2930 -3.5881 1.0756 45 1 6.0161 -0.9010 1.8616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293762802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:38 Heat of formation + Delta-G solvation = 14.266967 kcal Electronic energy + Delta-G solvation = -27786.775618 eV Core-core repulsion = 23964.133987 eV Total energy + Delta-G solvation = -3822.641631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.62295 -39.52430 -37.98799 -36.30056 -35.56361 -34.68135 -33.42747 -32.26173 -30.66852 -29.51789 -28.16129 -25.96001 -24.95830 -23.22058 -22.73619 -22.26465 -21.87972 -20.06984 -19.89103 -18.91306 -17.64845 -17.16826 -17.13595 -16.01259 -15.69099 -15.63064 -15.40727 -15.12590 -14.61480 -14.54246 -14.29410 -14.01288 -13.64961 -13.18875 -13.03014 -12.84358 -12.76192 -12.42971 -12.30132 -11.99225 -11.84061 -11.48628 -11.38508 -11.12881 -11.03895 -10.92422 -10.87188 -10.81220 -10.73235 -10.29824 -10.18072 -9.80133 -9.65993 -9.33801 -8.99117 -8.77234 -8.49705 -7.81876 -7.78880 -6.29002 -4.29043 1.41789 1.70062 2.44891 2.52463 2.92210 3.15020 3.23536 3.26281 3.37715 3.58811 3.89692 4.22581 4.28143 4.41158 4.50928 4.57913 4.82630 5.01401 5.10527 5.28125 5.30756 5.34245 5.41352 5.44381 5.55318 5.64022 5.80924 5.85897 5.86454 5.93119 5.94165 6.15808 6.30454 6.32952 6.45363 6.50292 6.64464 6.71382 6.90511 6.97048 6.99271 7.05371 7.33620 7.36749 7.40302 7.44778 8.05581 8.09861 8.36050 8.72933 8.87898 9.30504 10.82229 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.003911 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.839361 B = 7156.948395 C = 8625.936460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C 0.143 3.857 4 N -0.582 5.582 5 C 0.205 3.795 6 C -0.541 4.541 7 H 0.083 0.917 8 C 0.082 3.918 9 N -0.885 5.885 10 Si 0.865 3.135 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.264 1.264 14 C 0.560 3.440 15 O -0.557 6.557 16 C -0.107 4.107 17 C -0.078 4.078 18 C -0.112 4.112 19 C -0.130 4.130 20 C 0.116 3.884 21 N -0.667 5.667 22 C 0.535 3.465 23 O -0.512 6.512 24 C -0.195 4.195 25 C -0.153 4.153 26 C -0.147 4.147 27 C -0.076 4.076 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.268 0.732 36 H 0.175 0.825 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.409 0.591 40 H 0.126 0.874 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.089 -13.474 3.897 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.175 4.175 3 C 0.021 3.979 4 N -0.311 5.311 5 C 0.084 3.916 6 C -0.579 4.579 7 H 0.101 0.899 8 C -0.122 4.122 9 N -0.522 5.522 10 Si 0.692 3.308 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.188 1.188 14 C 0.348 3.652 15 O -0.437 6.437 16 C -0.110 4.110 17 C -0.096 4.096 18 C -0.130 4.130 19 C -0.150 4.150 20 C 0.023 3.977 21 N -0.312 5.312 22 C 0.323 3.677 23 O -0.386 6.386 24 C -0.216 4.216 25 C -0.190 4.190 26 C -0.184 4.184 27 C -0.097 4.097 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.192 0.808 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.244 0.756 40 H 0.144 0.856 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.128 0.872 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.060 -13.421 2.621 16.976 hybrid contribution -0.333 -0.455 1.697 1.788 sum 9.727 -13.876 4.318 17.488 Atomic orbital electron populations 1.23789 0.95761 1.01616 1.01851 1.23395 0.96085 0.99352 0.98714 1.20472 0.92292 0.94901 0.90266 1.47822 1.08174 1.63430 1.11650 1.19907 0.95659 0.96393 0.79670 1.21313 1.45496 0.89398 1.01692 0.89918 1.24816 0.94497 0.94672 0.98242 1.69887 1.46538 1.07481 1.28285 0.86991 0.79595 0.80854 0.83385 1.19593 1.20882 1.18825 1.18337 0.82179 0.77331 0.87322 1.90713 1.78887 1.46438 1.27634 1.19761 0.98057 0.95489 0.97735 1.22519 0.95929 0.98842 0.92312 1.20975 0.95762 0.98353 0.97950 1.20964 1.01024 0.91651 1.01369 1.17424 0.93370 0.87940 0.98936 1.43340 1.48758 1.27968 1.11160 1.19829 0.79202 0.83242 0.85462 1.90797 1.56270 1.73281 1.18278 1.22175 0.98285 0.98606 1.02533 1.22961 0.89741 1.03035 1.03279 1.22981 1.01183 0.96811 0.97409 1.20988 0.92784 0.99365 0.96554 0.88291 0.88913 0.87809 0.89413 0.89662 0.94818 0.94728 0.92235 0.80831 0.85211 0.86087 0.75597 0.85643 0.88116 0.87711 0.87802 0.87185 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 14.32 29.01 0.42 -2.37 16 2 C -0.16 -2.62 9.84 -36.03 -0.35 -2.97 16 3 C 0.14 2.71 5.88 -5.20 -0.03 2.68 16 4 N -0.58 -12.42 2.44 -177.55 -0.43 -12.85 16 5 C 0.20 4.57 3.75 -5.19 -0.02 4.55 16 6 C -0.54 -13.48 7.00 -34.44 -0.24 -13.72 16 7 H 0.08 2.28 7.92 -52.49 -0.42 1.87 16 8 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.89 -24.31 13.96 55.43 0.77 -23.54 16 10 Si 0.87 19.36 27.47 -169.99 -4.67 14.69 16 11 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 14 C 0.56 12.56 7.20 -12.32 -0.09 12.47 16 15 O -0.56 -13.65 16.58 5.32 0.09 -13.56 16 16 C -0.11 -2.23 4.69 -104.99 -0.49 -2.72 16 17 C -0.08 -1.57 7.75 -39.16 -0.30 -1.87 16 18 C -0.11 -1.91 10.02 -39.67 -0.40 -2.31 16 19 C -0.13 -1.92 9.95 -39.31 -0.39 -2.31 16 20 C 0.12 1.85 6.27 -83.74 -0.53 1.33 16 21 N -0.67 -8.19 5.34 -9.90 -0.05 -8.24 16 22 C 0.54 7.18 7.35 -10.99 -0.08 7.09 16 23 O -0.51 -9.30 13.96 5.55 0.08 -9.22 16 24 C -0.19 -1.74 6.19 -91.77 -0.57 -2.31 16 25 C -0.15 -1.15 10.23 -26.73 -0.27 -1.42 16 26 C -0.15 -1.26 10.04 -26.73 -0.27 -1.52 16 27 C -0.08 -1.47 8.32 -38.98 -0.32 -1.79 16 28 H 0.10 1.38 7.84 -52.49 -0.41 0.97 16 29 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.09 1.63 7.76 -51.93 -0.40 1.22 16 32 H 0.09 1.63 7.36 -51.93 -0.38 1.25 16 33 H 0.03 0.76 7.17 -51.93 -0.37 0.38 16 34 H 0.03 0.78 5.55 -51.93 -0.29 0.49 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.17 3.92 4.83 -52.48 -0.25 3.67 16 37 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 38 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.41 3.36 8.82 -40.82 -0.36 3.00 16 40 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.11 1.18 7.67 -51.93 -0.40 0.78 16 45 H 0.13 2.74 6.43 -52.48 -0.34 2.40 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -31.97 379.25 -8.71 -40.68 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -6.17 Total: 11.51 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -4.04 Total: -5.19 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.29 Total: -44.63 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.17 Total: -22.78 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.67 Total: 14.69 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.97 -8.71 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293762802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.951 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds