Wall clock time and date at job start Tue Mar 31 2020 16:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00604 * 2 1 4 4 N 1.46498 * 109.47482 * 124.99699 * 3 2 1 5 5 C 1.46493 * 120.00274 * 274.77550 * 4 3 2 6 6 C 1.50705 * 109.47056 * 276.13525 * 5 4 3 7 7 H 1.07999 * 119.99926 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99919 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00084 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00170 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47429 * 89.99512 * 10 8 6 12 12 H 1.48493 * 109.47361 * 210.00097 * 10 8 6 13 13 H 1.48508 * 109.47059 * 329.99864 * 10 8 6 14 14 C 1.34778 * 119.99571 * 94.77507 * 4 3 2 15 15 O 1.21551 * 120.00413 * 354.65259 * 14 4 3 16 16 C 1.47859 * 119.99643 * 174.64888 * 14 4 3 17 17 C 1.39614 * 120.11468 * 311.78221 * 16 14 4 18 18 C 1.37984 * 119.99450 * 179.97438 * 17 16 14 19 19 C 1.38250 * 120.22519 * 359.97438 * 18 17 16 20 20 C 1.38947 * 120.22073 * 0.02562 * 19 18 17 21 21 N 1.39957 * 119.99713 * 179.97438 * 20 19 18 22 22 C 1.34772 * 120.00266 * 213.52515 * 21 20 19 23 23 O 1.21288 * 120.00024 * 5.29857 * 22 21 20 24 24 C 1.50696 * 120.00228 * 185.28898 * 22 21 20 25 25 C 1.53005 * 117.50212 * 248.62409 * 24 22 21 26 26 C 1.52996 * 60.00107 * 252.51130 * 25 24 22 27 27 C 1.38632 * 120.00240 * 359.97438 * 20 19 18 28 28 H 1.08001 * 119.99505 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00135 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99709 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47022 * 4.99629 * 3 2 1 32 32 H 1.09002 * 109.47015 * 245.00191 * 3 2 1 33 33 H 1.08997 * 109.47127 * 36.13105 * 5 4 3 34 34 H 1.08994 * 109.47362 * 156.13537 * 5 4 3 35 35 H 0.96996 * 120.00138 * 179.97438 * 9 8 6 36 36 H 1.08003 * 119.99974 * 359.97438 * 17 16 14 37 37 H 1.08008 * 119.88328 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.88955 * 179.71993 * 19 18 17 39 39 H 0.97006 * 120.00156 * 33.53318 * 21 20 19 40 40 H 1.09005 * 115.55117 * 34.33554 * 24 22 21 41 41 H 1.08997 * 117.49547 * 0.02562 * 25 24 22 42 42 H 1.09000 * 117.49414 * 145.02132 * 25 24 22 43 43 H 1.09006 * 117.50044 * 252.50821 * 26 25 24 44 44 H 1.08998 * 117.51917 * 107.47911 * 26 25 24 45 45 H 1.08004 * 120.10649 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5299 1.7668 2.4511 6 6 2.5789 3.2710 2.5301 7 1 2.9218 3.8454 1.6823 8 6 2.1859 3.9138 3.6849 9 7 2.2291 5.2264 3.7541 10 14 1.5935 2.9202 5.1516 11 1 2.7484 2.5892 6.0244 12 1 0.6035 3.7158 5.9211 13 1 0.9574 1.6656 4.6753 14 6 4.2766 0.9562 0.9581 15 8 4.6384 0.5036 -0.1104 16 6 5.2438 1.0949 2.0679 17 6 5.3265 2.2933 2.7794 18 6 6.2297 2.4198 3.8149 19 6 7.0544 1.3627 4.1521 20 6 6.9798 0.1659 3.4501 21 7 7.8173 -0.9010 3.7951 22 6 8.2688 -1.7391 2.8411 23 8 8.0292 -1.5144 1.6735 24 6 9.0716 -2.9553 3.2249 25 6 10.5520 -2.9754 2.8389 26 6 9.5556 -3.8675 2.0959 27 6 6.0758 0.0286 2.4081 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3588 2.1316 0.0895 32 1 2.6214 1.4024 -0.9314 33 1 1.5055 1.4281 2.6059 34 1 3.1735 1.3414 3.2210 35 1 1.9523 5.6787 4.5663 36 1 4.6837 3.1212 2.5192 37 1 6.2925 3.3478 4.3638 38 1 7.7625 1.4691 4.9606 39 1 8.0728 -1.0374 4.7209 40 1 8.7903 -3.4263 4.1668 41 1 10.9454 -2.1087 2.3077 42 1 11.2450 -3.4595 3.5271 43 1 9.5931 -4.9385 2.2952 44 1 9.2930 -3.5881 1.0756 45 1 6.0161 -0.9010 1.8616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293762802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:36 Heat of formation + Delta-G solvation = -5.312008 kcal Electronic energy + Delta-G solvation = -27787.624626 eV Core-core repulsion = 23964.133987 eV Total energy + Delta-G solvation = -3823.490639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84794 -41.04556 -39.32049 -37.30077 -37.14672 -35.94069 -35.05538 -34.03253 -32.09876 -30.86498 -30.00103 -27.49030 -25.96320 -24.89588 -23.93777 -23.36456 -23.11130 -21.29575 -21.09001 -20.38019 -19.10452 -18.74609 -18.50750 -17.64154 -17.14514 -17.03861 -16.55318 -16.35708 -16.08388 -15.84672 -15.73721 -15.26749 -15.06203 -14.78920 -14.48215 -14.38674 -14.15646 -13.84887 -13.63434 -13.53687 -13.18790 -12.88746 -12.62573 -12.58168 -12.49374 -12.44196 -12.34858 -11.98868 -11.67130 -11.57153 -11.53459 -11.39633 -11.02940 -10.94592 -10.74498 -10.37377 -9.94949 -9.56269 -9.13553 -8.28411 -6.32862 -0.00715 0.30562 1.21348 1.37993 1.39623 1.42649 1.50480 1.70079 1.95223 2.30576 2.35258 2.77983 2.91892 3.04483 3.48132 3.66791 3.82489 3.93686 3.95776 4.01102 4.10934 4.18862 4.20972 4.37895 4.45175 4.52284 4.56920 4.66966 4.74151 4.74260 4.83460 4.86882 4.92201 5.00309 5.02883 5.16930 5.21935 5.36564 5.40796 5.49774 5.56233 5.58561 5.63203 5.83837 5.99431 6.14432 6.39201 6.51004 6.66960 7.10944 7.11156 7.30389 8.86288 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.003911 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.839361 B = 7156.948395 C = 8625.936460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.183 4.183 3 C 0.140 3.860 4 N -0.583 5.583 5 C 0.218 3.782 6 C -0.531 4.531 7 H 0.040 0.960 8 C 0.038 3.962 9 N -0.929 5.929 10 Si 0.924 3.076 11 H -0.257 1.257 12 H -0.283 1.283 13 H -0.251 1.251 14 C 0.552 3.448 15 O -0.590 6.590 16 C -0.129 4.129 17 C -0.097 4.097 18 C -0.111 4.111 19 C -0.106 4.106 20 C 0.125 3.875 21 N -0.651 5.651 22 C 0.528 3.472 23 O -0.569 6.569 24 C -0.194 4.194 25 C -0.135 4.135 26 C -0.158 4.158 27 C -0.091 4.091 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.270 0.730 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.173 0.827 39 H 0.433 0.567 40 H 0.164 0.836 41 H 0.084 0.916 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.077 0.923 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.064 -15.811 7.415 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.203 4.203 3 C 0.018 3.982 4 N -0.311 5.311 5 C 0.097 3.903 6 C -0.569 4.569 7 H 0.059 0.941 8 C -0.163 4.163 9 N -0.568 5.568 10 Si 0.747 3.253 11 H -0.181 1.181 12 H -0.208 1.208 13 H -0.175 1.175 14 C 0.342 3.658 15 O -0.473 6.473 16 C -0.132 4.132 17 C -0.116 4.116 18 C -0.129 4.129 19 C -0.126 4.126 20 C 0.031 3.969 21 N -0.298 5.298 22 C 0.318 3.682 23 O -0.447 6.447 24 C -0.215 4.215 25 C -0.172 4.172 26 C -0.195 4.195 27 C -0.113 4.113 28 H 0.125 0.875 29 H 0.140 0.860 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.190 0.810 39 H 0.273 0.727 40 H 0.181 0.819 41 H 0.103 0.897 42 H 0.159 0.841 43 H 0.150 0.850 44 H 0.096 0.904 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.037 -15.777 6.175 20.220 hybrid contribution -0.587 0.297 0.507 0.830 sum 10.450 -15.480 6.682 19.837 Atomic orbital electron populations 1.24064 0.94719 1.03324 0.97580 1.23136 0.96857 0.97651 1.02617 1.20564 0.91981 0.96563 0.89055 1.47913 1.08421 1.62755 1.12000 1.19702 0.95870 0.94447 0.80307 1.21242 1.44749 0.90488 1.00421 0.94141 1.25494 0.94539 0.95404 1.00832 1.70012 1.48189 1.09307 1.29306 0.86055 0.79528 0.79709 0.80012 1.18127 1.20849 1.17508 1.18767 0.82726 0.76759 0.87548 1.90669 1.79452 1.48172 1.29005 1.19678 0.98872 0.96578 0.98111 1.22202 0.97559 0.97600 0.94247 1.21221 0.94998 0.99948 0.96762 1.21363 1.00186 0.89699 1.01379 1.17526 0.92399 0.89489 0.97447 1.43278 1.47443 1.26624 1.12442 1.20738 0.78658 0.84072 0.84696 1.90791 1.58410 1.74648 1.20829 1.22262 0.98634 0.96585 1.03988 1.23076 0.89222 1.02057 1.02841 1.23047 1.02126 0.98490 0.95869 1.20901 0.94086 0.98200 0.98075 0.87513 0.86045 0.88432 0.89437 0.90921 0.94174 0.94253 0.92065 0.83979 0.83346 0.80982 0.72708 0.81895 0.89717 0.84136 0.85033 0.90415 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 14.32 67.78 0.97 -3.37 16 2 C -0.18 -6.21 9.84 25.64 0.25 -5.96 16 3 C 0.14 5.60 5.88 85.63 0.50 6.10 16 4 N -0.58 -26.20 2.44 -833.93 -2.04 -28.24 16 5 C 0.22 9.93 3.75 85.64 0.32 10.25 16 6 C -0.53 -27.49 7.00 25.60 0.18 -27.31 16 7 H 0.04 2.40 7.92 -2.91 -0.02 2.38 16 8 C 0.04 1.97 5.47 84.65 0.46 2.44 16 9 N -0.93 -52.32 13.96 21.45 0.30 -52.02 16 10 Si 0.92 39.14 27.47 68.60 1.88 41.02 16 11 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 13 H -0.25 -10.07 6.54 99.48 0.65 -9.42 16 14 C 0.55 26.44 7.20 86.79 0.63 27.06 16 15 O -0.59 -31.13 16.58 -3.87 -0.06 -31.19 16 16 C -0.13 -5.62 4.69 -20.10 -0.09 -5.71 16 17 C -0.10 -4.04 7.75 22.54 0.17 -3.86 16 18 C -0.11 -3.62 10.02 22.21 0.22 -3.40 16 19 C -0.11 -2.80 9.95 22.44 0.22 -2.57 16 20 C 0.13 3.80 6.27 38.11 0.24 4.04 16 21 N -0.65 -14.21 5.34 -303.61 -1.62 -15.83 16 22 C 0.53 13.51 7.35 87.66 0.64 14.16 16 23 O -0.57 -21.31 13.96 -3.05 -0.04 -21.36 16 24 C -0.19 -2.90 6.19 -11.54 -0.07 -2.98 16 25 C -0.13 -1.62 10.23 30.59 0.31 -1.30 16 26 C -0.16 -2.44 10.04 30.59 0.31 -2.13 16 27 C -0.09 -3.62 8.32 22.66 0.19 -3.44 16 28 H 0.11 2.77 7.84 -2.91 -0.02 2.74 16 29 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.10 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.09 3.40 7.76 -2.39 -0.02 3.39 16 32 H 0.07 3.01 7.36 -2.39 -0.02 3.00 16 33 H 0.04 1.78 7.17 -2.39 -0.02 1.76 16 34 H 0.04 1.77 5.55 -2.39 -0.01 1.76 16 35 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.14 6.83 4.83 -2.91 -0.01 6.81 16 37 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.43 5.15 8.82 -92.70 -0.82 4.33 16 40 H 0.16 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 42 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.08 1.73 7.67 -2.39 -0.02 1.71 16 45 H 0.11 4.87 6.43 -2.91 -0.02 4.85 16 Total: -1.00 -76.14 379.25 4.02 -72.12 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.14 Total: 33.50 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 5.46 Total: 2.00 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -3.36 Total: -96.09 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -0.11 Total: -52.55 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.88 Total: 41.02 kcal Total: -76.14 4.02 -72.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293762802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.805 kcal (2) G-P(sol) polarization free energy of solvation -76.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds