Wall clock time and date at job start Tue Mar 31 2020 16:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00157 * 2 1 4 4 N 1.46493 * 109.47374 * 127.44062 * 3 2 1 5 5 C 1.46503 * 120.00232 * 280.61984 * 4 3 2 6 6 C 1.50702 * 109.46599 * 269.99742 * 5 4 3 7 7 H 1.07994 * 120.00480 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99642 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99993 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99892 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46967 * 90.00433 * 10 8 6 12 12 H 1.48508 * 109.47217 * 210.00253 * 10 8 6 13 13 H 1.48499 * 109.47255 * 330.00569 * 10 8 6 14 14 C 1.34784 * 119.99890 * 100.61890 * 4 3 2 15 15 O 1.21580 * 119.99730 * 178.24272 * 14 4 3 16 16 C 1.47591 * 119.99829 * 358.24082 * 14 4 3 17 17 C 1.39748 * 120.07582 * 318.90830 * 16 14 4 18 18 C 1.37671 * 119.92933 * 179.74398 * 17 16 14 19 19 C 1.39135 * 120.06940 * 0.25044 * 18 17 16 20 20 N 1.39441 * 119.92150 * 179.97438 * 19 18 17 21 21 C 1.34775 * 120.00274 * 31.77741 * 20 19 18 22 22 O 1.21281 * 119.99820 * 5.00676 * 21 20 19 23 23 C 1.50703 * 119.99997 * 184.99694 * 21 20 19 24 24 C 1.52994 * 117.50200 * 248.62065 * 23 21 20 25 25 C 1.53002 * 60.00321 * 252.51434 * 24 23 21 26 26 C 1.39137 * 120.14951 * 359.97438 * 19 18 17 27 27 C 1.37665 * 120.07189 * 359.97438 * 26 19 18 28 28 H 1.08000 * 120.00138 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.00233 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99696 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46803 * 7.44015 * 3 2 1 32 32 H 1.08998 * 109.46871 * 247.44759 * 3 2 1 33 33 H 1.08991 * 109.46898 * 29.99565 * 5 4 3 34 34 H 1.09002 * 109.46946 * 150.00413 * 5 4 3 35 35 H 0.96998 * 119.99787 * 179.97438 * 9 8 6 36 36 H 1.08007 * 120.03793 * 0.02562 * 17 16 14 37 37 H 1.07995 * 119.96867 * 180.27659 * 18 17 16 38 38 H 0.97008 * 119.99859 * 211.76928 * 20 19 18 39 39 H 1.08999 * 115.54612 * 34.34005 * 23 21 20 40 40 H 1.09005 * 117.49763 * 0.02562 * 24 23 21 41 41 H 1.08994 * 117.49546 * 145.02070 * 24 23 21 42 42 H 1.08996 * 117.49734 * 252.51591 * 25 24 23 43 43 H 1.08999 * 117.51486 * 107.47998 * 25 24 23 44 44 H 1.07992 * 119.95997 * 180.02562 * 26 19 18 45 45 H 1.07998 * 120.03595 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0348 1.3082 1.0966 5 6 2.5940 1.5902 2.4650 6 6 2.6761 3.0726 2.7236 7 1 3.0216 3.7381 1.9464 8 6 2.3090 3.5793 3.9522 9 7 1.8877 2.7690 4.8985 10 14 2.4101 5.4169 4.2726 11 1 1.1216 6.0555 3.9021 12 1 2.6839 5.6539 5.7129 13 1 3.5050 6.0020 3.4577 14 6 4.3342 1.0515 0.8466 15 8 5.1455 1.0855 1.7515 16 6 4.7720 0.7292 -0.5255 17 6 3.9960 -0.1103 -1.3292 18 6 4.4046 -0.4048 -2.6105 19 6 5.5914 0.1284 -3.1036 20 7 6.0026 -0.1723 -4.4016 21 6 5.0861 -0.3905 -5.3654 22 8 3.9069 -0.2366 -5.1269 23 6 5.5264 -0.8255 -6.7394 24 6 5.3467 0.1702 -7.8871 25 6 4.4381 -1.0569 -7.7897 26 6 6.3688 0.9608 -2.3045 27 6 5.9653 1.2601 -1.0227 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3627 2.1292 0.1331 32 1 2.5865 1.4226 -0.9491 33 1 1.5643 1.2559 2.5910 34 1 3.2364 1.0623 3.1697 35 1 1.6298 3.1255 5.7630 36 1 3.0744 -0.5241 -0.9472 37 1 3.8032 -1.0499 -3.2337 38 1 6.9484 -0.2244 -4.6110 39 1 6.4007 -1.4757 -6.7689 40 1 4.9104 1.1401 -7.6482 41 1 6.1031 0.1754 -8.6718 42 1 4.5968 -1.8591 -8.5104 43 1 3.4037 -0.8948 -7.4868 44 1 7.2891 1.3733 -2.6905 45 1 6.5690 1.9066 -0.4031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293923536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:45 Heat of formation + Delta-G solvation = 21.415186 kcal Electronic energy + Delta-G solvation = -27183.585787 eV Core-core repulsion = 23361.254126 eV Total energy + Delta-G solvation = -3822.331661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95296 -39.70219 -38.07117 -36.48801 -35.76903 -34.91788 -33.15219 -32.05062 -30.98250 -30.11564 -27.49948 -25.77904 -25.19895 -23.38018 -22.90498 -22.88945 -21.89099 -20.37636 -20.10114 -18.79815 -18.08041 -17.62805 -16.81411 -16.43258 -15.83624 -15.71928 -15.30379 -15.06653 -14.70183 -14.54190 -14.38560 -14.01796 -13.72018 -13.33032 -13.16171 -12.98843 -12.90946 -12.68796 -12.19797 -12.04838 -11.96598 -11.62377 -11.24429 -11.16987 -11.10226 -11.02623 -11.00636 -10.76997 -10.58862 -10.47692 -10.17965 -10.08800 -9.62093 -9.16508 -8.99464 -8.85080 -8.40032 -8.13146 -7.66133 -6.00744 -4.05017 0.98257 1.45114 2.11416 2.49441 2.65003 3.29622 3.32840 3.39019 3.42283 3.45937 3.87539 4.13333 4.18494 4.30074 4.39229 4.48045 4.60751 4.87275 4.98949 5.02573 5.12995 5.25903 5.29310 5.34006 5.36745 5.41692 5.46659 5.48480 5.53283 5.66977 5.73113 6.04690 6.07494 6.16801 6.20503 6.27427 6.39639 6.55676 6.83112 6.91280 6.98054 7.06848 7.14846 7.47428 7.57425 7.77964 7.95759 8.26997 8.41562 8.92302 9.08940 9.59538 11.07468 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.002692 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.688582 B =10400.074576 C =10931.353715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.173 4.173 3 C 0.127 3.873 4 N -0.585 5.585 5 C 0.247 3.753 6 C -0.525 4.525 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.546 3.454 15 O -0.535 6.535 16 C -0.130 4.130 17 C -0.084 4.084 18 C -0.131 4.131 19 C 0.152 3.848 20 N -0.667 5.667 21 C 0.540 3.460 22 O -0.514 6.514 23 C -0.197 4.197 24 C -0.152 4.152 25 C -0.145 4.145 26 C -0.154 4.154 27 C -0.050 4.050 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.411 0.589 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.128 0.872 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 -8.743 -25.665 27.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.192 4.192 3 C 0.004 3.996 4 N -0.315 5.315 5 C 0.128 3.872 6 C -0.563 4.563 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.333 3.667 15 O -0.413 6.413 16 C -0.134 4.134 17 C -0.103 4.103 18 C -0.151 4.151 19 C 0.058 3.942 20 N -0.311 5.311 21 C 0.328 3.672 22 O -0.389 6.389 23 C -0.219 4.219 24 C -0.189 4.189 25 C -0.183 4.183 26 C -0.174 4.174 27 C -0.069 4.069 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.247 0.753 39 H 0.145 0.855 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.128 0.872 44 H 0.146 0.854 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.207 -8.625 -24.839 27.017 hybrid contribution 0.566 0.928 0.187 1.103 sum 6.773 -7.697 -24.652 26.699 Atomic orbital electron populations 1.23820 0.95752 1.01866 0.99893 1.23411 0.96393 0.98853 1.00553 1.20813 0.92475 0.95294 0.91040 1.48160 1.05755 1.67054 1.10507 1.19299 0.95628 0.96455 0.75787 1.21427 1.43986 0.92374 0.98554 0.92429 1.24930 0.95169 0.98191 0.95821 1.69938 1.44388 1.34654 1.04397 0.86503 0.78293 0.85196 0.77468 1.20669 1.21105 1.19889 1.18173 0.82964 0.78165 0.87397 1.90765 1.52139 1.52353 1.46025 1.20266 0.96474 1.01125 0.95503 1.21870 0.99370 0.96227 0.92835 1.21043 0.96788 1.01521 0.95720 1.17844 0.96075 0.96383 0.83879 1.43348 1.10531 1.69744 1.07515 1.19845 0.85720 0.76354 0.85272 1.90742 1.17157 1.49351 1.81613 1.22181 1.04233 1.06694 0.88746 1.22983 1.03013 0.95146 0.97798 1.22991 0.96788 0.99741 0.98750 1.20745 1.01590 1.00019 0.95061 1.21006 0.94310 0.97356 0.94242 0.88184 0.88633 0.87318 0.89750 0.89699 0.94695 0.93819 0.92757 0.83674 0.84472 0.75276 0.85505 0.88037 0.87570 0.87690 0.87166 0.85394 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 14.32 29.02 0.42 -2.02 16 2 C -0.17 -2.66 8.34 -36.02 -0.30 -2.96 16 3 C 0.13 2.26 5.32 -5.20 -0.03 2.24 16 4 N -0.58 -12.99 2.46 -177.65 -0.44 -13.42 16 5 C 0.25 6.63 5.13 -5.19 -0.03 6.60 16 6 C -0.52 -15.17 9.39 -34.44 -0.32 -15.49 16 7 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 10 Si 0.90 22.22 29.54 -169.99 -5.02 17.19 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.55 12.13 7.30 -12.44 -0.09 12.04 16 15 O -0.53 -14.05 16.53 5.30 0.09 -13.96 16 16 C -0.13 -2.27 5.07 -104.95 -0.53 -2.80 16 17 C -0.08 -1.27 7.45 -39.22 -0.29 -1.57 16 18 C -0.13 -1.79 8.64 -39.46 -0.34 -2.13 16 19 C 0.15 1.84 6.31 -83.73 -0.53 1.31 16 20 N -0.67 -5.89 5.32 -9.85 -0.05 -5.94 16 21 C 0.54 5.32 7.36 -10.99 -0.08 5.24 16 22 O -0.51 -7.05 13.80 5.56 0.08 -6.98 16 23 C -0.20 -1.22 6.19 -91.77 -0.57 -1.78 16 24 C -0.15 -0.80 10.23 -26.73 -0.27 -1.07 16 25 C -0.15 -0.87 10.04 -26.73 -0.27 -1.14 16 26 C -0.15 -1.84 9.94 -39.46 -0.39 -2.23 16 27 C -0.05 -0.76 9.63 -39.23 -0.38 -1.13 16 28 H 0.10 1.36 7.85 -52.49 -0.41 0.95 16 29 H 0.10 1.14 8.06 -52.48 -0.42 0.71 16 30 H 0.11 1.57 6.48 -52.48 -0.34 1.23 16 31 H 0.08 1.54 7.80 -51.93 -0.41 1.13 16 32 H 0.09 1.39 5.24 -51.93 -0.27 1.11 16 33 H 0.04 0.95 8.05 -51.93 -0.42 0.53 16 34 H 0.04 1.31 7.45 -51.93 -0.39 0.93 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.15 2.10 3.54 -52.48 -0.19 1.92 16 37 H 0.14 1.88 6.27 -52.49 -0.33 1.55 16 38 H 0.41 2.15 8.81 -40.82 -0.36 1.79 16 39 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.11 0.86 7.67 -51.93 -0.40 0.46 16 44 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -35.91 380.37 -8.99 -44.91 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.01 Total: 3.94 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -4.10 Total: -5.25 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.25 Total: -45.58 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.16 Total: -20.94 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.91 -8.99 -44.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293923536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.322 kcal (2) G-P(sol) polarization free energy of solvation -35.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds