Wall clock time and date at job start Tue Mar 31 2020 16:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00157 * 2 1 4 4 N 1.46493 * 109.47374 * 127.44062 * 3 2 1 5 5 C 1.46503 * 120.00232 * 280.61984 * 4 3 2 6 6 C 1.50702 * 109.46599 * 269.99742 * 5 4 3 7 7 H 1.07994 * 120.00480 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99642 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99993 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99892 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46967 * 90.00433 * 10 8 6 12 12 H 1.48508 * 109.47217 * 210.00253 * 10 8 6 13 13 H 1.48499 * 109.47255 * 330.00569 * 10 8 6 14 14 C 1.34784 * 119.99890 * 100.61890 * 4 3 2 15 15 O 1.21580 * 119.99730 * 178.24272 * 14 4 3 16 16 C 1.47591 * 119.99829 * 358.24082 * 14 4 3 17 17 C 1.39748 * 120.07582 * 318.90830 * 16 14 4 18 18 C 1.37671 * 119.92933 * 179.74398 * 17 16 14 19 19 C 1.39135 * 120.06940 * 0.25044 * 18 17 16 20 20 N 1.39441 * 119.92150 * 179.97438 * 19 18 17 21 21 C 1.34775 * 120.00274 * 31.77741 * 20 19 18 22 22 O 1.21281 * 119.99820 * 5.00676 * 21 20 19 23 23 C 1.50703 * 119.99997 * 184.99694 * 21 20 19 24 24 C 1.52994 * 117.50200 * 248.62065 * 23 21 20 25 25 C 1.53002 * 60.00321 * 252.51434 * 24 23 21 26 26 C 1.39137 * 120.14951 * 359.97438 * 19 18 17 27 27 C 1.37665 * 120.07189 * 359.97438 * 26 19 18 28 28 H 1.08000 * 120.00138 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.00233 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99696 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46803 * 7.44015 * 3 2 1 32 32 H 1.08998 * 109.46871 * 247.44759 * 3 2 1 33 33 H 1.08991 * 109.46898 * 29.99565 * 5 4 3 34 34 H 1.09002 * 109.46946 * 150.00413 * 5 4 3 35 35 H 0.96998 * 119.99787 * 179.97438 * 9 8 6 36 36 H 1.08007 * 120.03793 * 0.02562 * 17 16 14 37 37 H 1.07995 * 119.96867 * 180.27659 * 18 17 16 38 38 H 0.97008 * 119.99859 * 211.76928 * 20 19 18 39 39 H 1.08999 * 115.54612 * 34.34005 * 23 21 20 40 40 H 1.09005 * 117.49763 * 0.02562 * 24 23 21 41 41 H 1.08994 * 117.49546 * 145.02070 * 24 23 21 42 42 H 1.08996 * 117.49734 * 252.51591 * 25 24 23 43 43 H 1.08999 * 117.51486 * 107.47998 * 25 24 23 44 44 H 1.07992 * 119.95997 * 180.02562 * 26 19 18 45 45 H 1.07998 * 120.03595 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0348 1.3082 1.0966 5 6 2.5940 1.5902 2.4650 6 6 2.6761 3.0726 2.7236 7 1 3.0216 3.7381 1.9464 8 6 2.3090 3.5793 3.9522 9 7 1.8877 2.7690 4.8985 10 14 2.4101 5.4169 4.2726 11 1 1.1216 6.0555 3.9021 12 1 2.6839 5.6539 5.7129 13 1 3.5050 6.0020 3.4577 14 6 4.3342 1.0515 0.8466 15 8 5.1455 1.0855 1.7515 16 6 4.7720 0.7292 -0.5255 17 6 3.9960 -0.1103 -1.3292 18 6 4.4046 -0.4048 -2.6105 19 6 5.5914 0.1284 -3.1036 20 7 6.0026 -0.1723 -4.4016 21 6 5.0861 -0.3905 -5.3654 22 8 3.9069 -0.2366 -5.1269 23 6 5.5264 -0.8255 -6.7394 24 6 5.3467 0.1702 -7.8871 25 6 4.4381 -1.0569 -7.7897 26 6 6.3688 0.9608 -2.3045 27 6 5.9653 1.2601 -1.0227 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3627 2.1292 0.1331 32 1 2.5865 1.4226 -0.9491 33 1 1.5643 1.2559 2.5910 34 1 3.2364 1.0623 3.1697 35 1 1.6298 3.1255 5.7630 36 1 3.0744 -0.5241 -0.9472 37 1 3.8032 -1.0499 -3.2337 38 1 6.9484 -0.2244 -4.6110 39 1 6.4007 -1.4757 -6.7689 40 1 4.9104 1.1401 -7.6482 41 1 6.1031 0.1754 -8.6718 42 1 4.5968 -1.8591 -8.5104 43 1 3.4037 -0.8948 -7.4868 44 1 7.2891 1.3733 -2.6905 45 1 6.5690 1.9066 -0.4031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293923536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:43 Heat of formation + Delta-G solvation = -1.348476 kcal Electronic energy + Delta-G solvation = -27184.572893 eV Core-core repulsion = 23361.254126 eV Total energy + Delta-G solvation = -3823.318767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.90186 -41.07608 -39.26267 -37.42580 -37.12627 -35.92883 -35.09926 -33.75450 -32.13052 -31.37984 -29.38159 -27.13440 -26.40596 -24.99052 -24.03110 -23.35058 -23.14774 -21.50827 -21.08597 -20.29230 -18.90104 -18.67048 -18.49925 -18.25220 -17.43041 -16.63364 -16.38010 -16.26143 -16.12420 -15.91225 -15.57120 -15.23122 -14.90555 -14.80938 -14.40801 -14.34319 -14.12196 -13.81993 -13.58920 -13.49401 -13.28908 -13.00596 -12.94882 -12.59010 -12.44101 -12.40992 -12.25274 -12.08523 -11.70089 -11.58676 -11.51030 -11.41514 -11.05265 -10.70720 -10.65421 -10.40293 -9.98870 -9.58261 -9.17264 -8.23964 -6.38666 -0.18021 0.34047 1.25237 1.32691 1.35450 1.38109 1.48821 1.83071 1.91420 2.29974 2.43360 2.75341 2.92820 3.05451 3.55903 3.58410 3.82422 3.85930 3.91081 3.98158 4.03562 4.13432 4.21308 4.24080 4.35717 4.41438 4.50170 4.77998 4.78046 4.89419 4.91942 4.99556 5.00555 5.05405 5.08548 5.16855 5.19936 5.24888 5.33311 5.39926 5.48032 5.64039 5.71274 5.87509 5.89863 6.03749 6.35341 6.62663 6.70558 7.05028 7.22218 7.37672 8.83608 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.002692 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.688582 B =10400.074576 C =10931.353715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.194 4.194 3 C 0.129 3.871 4 N -0.589 5.589 5 C 0.265 3.735 6 C -0.544 4.544 7 H 0.050 0.950 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.969 3.031 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.273 1.273 14 C 0.541 3.459 15 O -0.591 6.591 16 C -0.157 4.157 17 C -0.080 4.080 18 C -0.136 4.136 19 C 0.167 3.833 20 N -0.653 5.653 21 C 0.535 3.465 22 O -0.557 6.557 23 C -0.195 4.195 24 C -0.142 4.142 25 C -0.154 4.154 26 C -0.138 4.138 27 C -0.057 4.057 28 H 0.102 0.898 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.026 0.974 34 H -0.001 1.001 35 H 0.268 0.732 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.433 0.567 39 H 0.161 0.839 40 H 0.086 0.914 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.084 0.916 44 H 0.170 0.830 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.704 -8.637 -29.066 31.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.213 4.213 3 C 0.007 3.993 4 N -0.318 5.318 5 C 0.144 3.856 6 C -0.583 4.583 7 H 0.069 0.931 8 C -0.190 4.190 9 N -0.566 5.566 10 Si 0.793 3.207 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.198 1.198 14 C 0.331 3.669 15 O -0.473 6.473 16 C -0.161 4.161 17 C -0.099 4.099 18 C -0.156 4.156 19 C 0.071 3.929 20 N -0.298 5.298 21 C 0.325 3.675 22 O -0.435 6.435 23 C -0.216 4.216 24 C -0.179 4.179 25 C -0.191 4.191 26 C -0.158 4.158 27 C -0.077 4.077 28 H 0.120 0.880 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.044 0.956 34 H 0.017 0.983 35 H 0.077 0.923 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.273 0.727 39 H 0.179 0.821 40 H 0.104 0.896 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.103 0.897 44 H 0.187 0.813 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.207 -8.535 -28.308 30.432 hybrid contribution 0.233 0.832 1.125 1.419 sum 7.441 -7.702 -27.183 29.217 Atomic orbital electron populations 1.24088 0.95209 1.03246 0.96973 1.23290 0.96953 0.97883 1.03145 1.20959 0.91700 0.96586 0.90024 1.48133 1.07002 1.66828 1.09858 1.18741 0.93923 0.95133 0.77788 1.21656 1.44463 0.93201 0.98938 0.93125 1.25861 0.94416 1.03383 0.95377 1.70054 1.44765 1.36909 1.04882 0.85398 0.78892 0.78952 0.77465 1.18781 1.20335 1.19829 1.18944 0.82214 0.76775 0.89011 1.90707 1.53450 1.54934 1.48212 1.19898 0.98583 1.04284 0.93334 1.21799 0.99185 0.95730 0.93150 1.21097 0.97683 1.01843 0.94956 1.17956 0.95034 0.94797 0.85124 1.43321 1.11792 1.68791 1.05944 1.20590 0.85127 0.75171 0.86571 1.90733 1.19141 1.51106 1.82511 1.22268 1.05301 1.07661 0.86333 1.23076 1.03074 0.94021 0.97721 1.23055 0.95597 1.01178 0.99307 1.20997 1.02592 0.98889 0.93289 1.21084 0.93463 0.97471 0.95687 0.88004 0.85987 0.86465 0.90631 0.88254 0.95590 0.98289 0.92312 0.83553 0.84287 0.72743 0.82149 0.89567 0.84725 0.85349 0.89700 0.81301 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 14.32 67.78 0.97 -3.27 16 2 C -0.19 -6.02 8.34 25.65 0.21 -5.81 16 3 C 0.13 4.76 5.32 85.63 0.46 5.22 16 4 N -0.59 -27.75 2.46 -834.22 -2.05 -29.80 16 5 C 0.27 15.13 5.13 85.63 0.44 15.57 16 6 C -0.54 -32.80 9.39 25.60 0.24 -32.56 16 7 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 8 C 0.01 0.52 5.46 84.65 0.46 0.98 16 9 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 10 Si 0.97 46.22 29.54 68.60 2.03 48.25 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 13 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 14 C 0.54 25.54 7.30 86.71 0.63 26.18 16 15 O -0.59 -33.36 16.53 -3.97 -0.07 -33.43 16 16 C -0.16 -5.66 5.07 -20.08 -0.10 -5.76 16 17 C -0.08 -2.43 7.45 22.50 0.17 -2.26 16 18 C -0.14 -3.58 8.64 22.35 0.19 -3.38 16 19 C 0.17 3.62 6.31 38.36 0.24 3.86 16 20 N -0.65 -9.33 5.32 -303.48 -1.62 -10.95 16 21 C 0.54 9.20 7.36 87.66 0.65 9.85 16 22 O -0.56 -14.68 13.80 -3.03 -0.04 -14.72 16 23 C -0.19 -1.73 6.19 -11.54 -0.07 -1.80 16 24 C -0.14 -1.04 10.23 30.59 0.31 -0.73 16 25 C -0.15 -1.47 10.04 30.60 0.31 -1.16 16 26 C -0.14 -2.95 9.94 22.35 0.22 -2.73 16 27 C -0.06 -1.74 9.63 22.50 0.22 -1.53 16 28 H 0.10 2.70 7.85 -2.91 -0.02 2.67 16 29 H 0.12 2.65 8.06 -2.91 -0.02 2.62 16 30 H 0.12 3.43 6.48 -2.91 -0.02 3.41 16 31 H 0.08 2.86 7.80 -2.39 -0.02 2.85 16 32 H 0.10 3.33 5.24 -2.39 -0.01 3.32 16 33 H 0.03 1.50 8.05 -2.39 -0.02 1.48 16 34 H 0.00 -0.06 7.45 -2.39 -0.02 -0.08 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 36 H 0.15 4.32 3.54 -2.91 -0.01 4.31 16 37 H 0.14 3.68 6.27 -2.91 -0.02 3.66 16 38 H 0.43 2.57 8.81 -92.70 -0.82 1.76 16 39 H 0.16 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.13 0.25 8.14 -2.39 -0.02 0.24 16 42 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.08 1.27 7.67 -2.39 -0.02 1.25 16 44 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 45 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -83.56 380.37 4.29 -79.27 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.21 Total: 17.82 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 5.55 Total: 0.67 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -3.38 Total: -97.86 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -0.11 Total: -48.15 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -83.56 4.29 -79.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293923536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.924 kcal (2) G-P(sol) polarization free energy of solvation -83.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds