Wall clock time and date at job start Tue Mar 31 2020 15:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50695 * 119.99946 * 2 1 4 4 N 1.46504 * 109.47228 * 123.88941 * 3 2 1 5 5 C 1.46496 * 119.99814 * 274.48966 * 4 3 2 6 6 C 1.50702 * 109.47350 * 277.12588 * 5 4 3 7 7 H 1.07999 * 119.99713 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00018 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99574 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99991 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46686 * 90.00452 * 10 8 6 12 12 H 1.48491 * 109.46944 * 209.99910 * 10 8 6 13 13 H 1.48494 * 109.47081 * 330.00314 * 10 8 6 14 14 C 1.34777 * 119.99925 * 94.48915 * 4 3 2 15 15 O 1.21285 * 119.99943 * 4.77424 * 14 4 3 16 16 C 1.50699 * 119.99838 * 184.76964 * 14 4 3 17 17 C 1.52999 * 109.47302 * 62.96982 * 16 14 4 18 18 C 1.53007 * 109.47358 * 302.96903 * 16 14 4 19 19 O 1.42904 * 109.47223 * 182.97112 * 16 14 4 20 20 C 1.35763 * 116.99697 * 299.80309 * 19 16 14 21 21 C 1.38960 * 119.90460 * 182.91094 * 20 19 16 22 22 C 1.37732 * 120.09533 * 180.02562 * 21 20 19 23 23 C 1.39752 * 119.90398 * 359.97438 * 22 21 20 24 24 C 1.43200 * 120.09885 * 179.97438 * 23 22 21 25 25 N 8.06174 * 136.74592 * 193.63197 * 2 1 3 26 26 C 1.39757 * 119.81082 * 0.24756 * 23 22 21 27 27 C 1.37726 * 119.90634 * 359.51325 * 26 23 22 28 28 H 1.08004 * 120.00379 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00391 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00015 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47490 * 3.88935 * 3 2 1 32 32 H 1.09006 * 109.47209 * 243.88518 * 3 2 1 33 33 H 1.08997 * 109.47532 * 37.12589 * 5 4 3 34 34 H 1.09003 * 109.47244 * 157.12836 * 5 4 3 35 35 H 0.97003 * 119.99699 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.47438 * 204.30347 * 17 16 14 37 37 H 1.09001 * 109.46510 * 324.30135 * 17 16 14 38 38 H 1.09000 * 109.47143 * 84.29601 * 17 16 14 39 39 H 1.08999 * 109.46845 * 307.89441 * 18 16 14 40 40 H 1.08995 * 109.46612 * 67.88889 * 18 16 14 41 41 H 1.08999 * 109.47287 * 187.89462 * 18 16 14 42 42 H 1.08003 * 119.95204 * 0.02580 * 21 20 19 43 43 H 1.07996 * 120.05050 * 179.97438 * 22 21 20 44 44 H 1.08007 * 120.04592 * 179.74728 * 26 23 22 45 45 H 1.08002 * 119.95453 * 180.23137 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9746 1.3429 1.1466 5 6 2.4900 1.7965 2.4526 6 6 2.5205 3.3023 2.5045 7 1 2.8660 3.8652 1.6499 8 6 2.1075 3.9614 3.6429 9 7 2.1337 5.2755 3.6880 10 14 1.5094 2.9879 5.1207 11 1 2.6581 2.6858 6.0122 12 1 0.5022 3.7861 5.8646 13 1 0.8927 1.7180 4.6602 14 6 4.2586 0.9605 0.9999 15 8 4.6825 0.6678 -0.0981 16 6 5.1676 0.8966 2.2001 17 6 4.6402 -0.1494 3.1843 18 6 5.2074 2.2652 2.8832 19 8 6.4851 0.5350 1.7812 20 6 6.6264 -0.6623 1.1568 21 6 7.8892 -1.1014 0.7782 22 6 8.0370 -2.3151 0.1441 23 6 6.9146 -3.1055 -0.1181 24 6 7.0634 -4.3678 -0.7777 25 7 7.1815 -5.3686 -1.3020 26 6 5.6459 -2.6578 0.2602 27 6 5.5076 -1.4451 0.8983 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3572 2.1324 0.0697 32 1 2.6369 1.3936 -0.9228 33 1 1.4679 1.4485 2.6018 34 1 3.1295 1.3929 3.2376 35 1 1.8435 5.7392 4.4890 36 1 4.9962 0.0837 4.1878 37 1 3.5503 -0.1406 3.1743 38 1 4.9982 -1.1365 2.8918 39 1 5.4478 3.0319 2.1468 40 1 4.2344 2.4788 3.3256 41 1 5.9682 2.2597 3.6637 42 1 8.7561 -0.4902 0.9816 43 1 9.0188 -2.6555 -0.1502 44 1 4.7755 -3.2637 0.0558 45 1 4.5280 -1.1001 1.1943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293947153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:01 Heat of formation + Delta-G solvation = 41.862580 kcal Electronic energy + Delta-G solvation = -28913.795812 eV Core-core repulsion = 25092.350817 eV Total energy + Delta-G solvation = -3821.444995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.39228 -39.18622 -37.74208 -36.15918 -35.91300 -34.36483 -32.78357 -32.13442 -31.12138 -30.30955 -28.50352 -27.10839 -26.07222 -23.92451 -23.27583 -22.71409 -21.70437 -20.17283 -19.11901 -18.97541 -17.41660 -17.22433 -16.42708 -16.22433 -15.61630 -15.29248 -15.07249 -14.66196 -14.39122 -14.16790 -14.01771 -13.86961 -13.55486 -13.34907 -13.29296 -13.13265 -12.94639 -12.74412 -12.61576 -12.23756 -12.10880 -11.97004 -11.77816 -11.57910 -11.53658 -11.30235 -11.10016 -10.96039 -10.89266 -10.68002 -10.40430 -10.28783 -9.78041 -9.48971 -9.15525 -9.03036 -8.88588 -8.09222 -7.94760 -6.38820 -4.40557 0.86723 1.30698 2.34766 2.64515 2.85692 2.98288 3.02922 3.11325 3.13930 3.18711 3.63012 3.86593 3.93793 4.09450 4.67850 4.75199 4.79106 4.88305 4.90492 5.05074 5.14072 5.18390 5.34509 5.35502 5.48119 5.58750 5.73054 5.77737 5.87674 5.99469 6.00793 6.02195 6.16674 6.19025 6.22024 6.27359 6.28780 6.35647 6.44813 6.59181 6.74216 6.80986 6.98554 7.09990 7.24152 7.37316 7.48012 7.82802 8.20094 8.52142 8.68872 9.17211 10.72942 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.004005 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.687442 B = 6990.232348 C = 7912.840488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.162 4.162 3 C 0.140 3.860 4 N -0.576 5.576 5 C 0.185 3.815 6 C -0.542 4.542 7 H 0.082 0.918 8 C 0.080 3.920 9 N -0.881 5.881 10 Si 0.859 3.141 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.262 1.262 14 C 0.495 3.505 15 O -0.546 6.546 16 C 0.101 3.899 17 C -0.201 4.201 18 C -0.161 4.161 19 O -0.283 6.283 20 C 0.185 3.815 21 C -0.161 4.161 22 C -0.034 4.034 23 C -0.086 4.086 24 C 0.268 3.732 25 N -0.441 5.441 26 C -0.035 4.035 27 C -0.181 4.181 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.269 0.731 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.142 0.858 41 H 0.062 0.938 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.129 0.871 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.916 -10.460 -0.399 11.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.181 4.181 3 C 0.018 3.982 4 N -0.306 5.306 5 C 0.065 3.935 6 C -0.580 4.580 7 H 0.101 0.899 8 C -0.125 4.125 9 N -0.518 5.518 10 Si 0.685 3.315 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.186 1.186 14 C 0.282 3.718 15 O -0.425 6.425 16 C 0.060 3.940 17 C -0.258 4.258 18 C -0.217 4.217 19 O -0.194 6.194 20 C 0.137 3.863 21 C -0.180 4.180 22 C -0.055 4.055 23 C -0.090 4.090 24 C -0.046 4.046 25 N -0.117 5.117 26 C -0.056 4.056 27 C -0.199 4.199 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.159 0.841 41 H 0.081 0.919 42 H 0.157 0.843 43 H 0.153 0.847 44 H 0.147 0.853 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.411 -11.800 -1.596 12.698 hybrid contribution -0.759 0.134 0.994 1.258 sum 3.652 -11.667 -0.602 12.240 Atomic orbital electron populations 1.23836 0.95801 1.01799 1.00919 1.23335 0.96145 0.99027 0.99572 1.20497 0.92668 0.95031 0.90002 1.47828 1.08459 1.62274 1.12070 1.20442 0.95998 0.96734 0.80374 1.21282 1.45346 0.88887 1.02521 0.89948 1.24859 0.94626 0.94759 0.98292 1.69869 1.45810 1.07029 1.29051 0.87105 0.79937 0.80923 0.83563 1.19332 1.20558 1.18600 1.20832 0.83194 0.77452 0.90343 1.90725 1.74620 1.50569 1.26593 1.21917 0.80607 0.99001 0.92448 1.23018 1.03671 0.98885 1.00213 1.22712 1.07654 0.90561 1.00741 1.86231 1.30041 1.32920 1.70206 1.19198 0.93828 0.84344 0.88894 1.20261 0.95500 0.97515 1.04694 1.20819 0.97451 0.92354 0.94835 1.15829 0.95003 0.90445 1.07738 1.25732 0.93359 0.92686 0.92844 1.81218 1.07819 1.11844 1.10797 1.20855 0.95475 0.94993 0.94250 1.21457 0.98835 0.95497 1.04153 0.88189 0.88782 0.87913 0.89288 0.89435 0.94647 0.93311 0.92064 0.90004 0.89245 0.90340 0.91181 0.84058 0.91912 0.84322 0.84750 0.85327 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 14.32 29.02 0.42 -1.89 16 2 C -0.16 -2.26 9.84 -36.03 -0.35 -2.62 16 3 C 0.14 2.31 5.94 -5.19 -0.03 2.28 16 4 N -0.58 -10.33 2.39 -176.43 -0.42 -10.75 16 5 C 0.19 3.53 2.95 -5.19 -0.02 3.52 16 6 C -0.54 -12.54 7.54 -34.44 -0.26 -12.79 16 7 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 8 C 0.08 1.92 5.32 -17.82 -0.09 1.83 16 9 N -0.88 -23.41 13.96 55.43 0.77 -22.64 16 10 Si 0.86 17.58 27.47 -169.99 -4.67 12.91 16 11 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.26 -5.04 6.54 56.52 0.37 -4.67 16 14 C 0.49 8.94 4.68 -10.99 -0.05 8.88 16 15 O -0.55 -10.81 13.14 -14.34 -0.19 -11.00 16 16 C 0.10 1.64 0.84 -91.77 -0.08 1.57 16 17 C -0.20 -2.71 7.26 37.16 0.27 -2.44 16 18 C -0.16 -2.77 7.68 37.16 0.29 -2.49 16 19 O -0.28 -4.55 9.64 -38.89 -0.37 -4.93 16 20 C 0.19 2.68 5.39 -39.04 -0.21 2.47 16 21 C -0.16 -1.93 9.97 -39.50 -0.39 -2.32 16 22 C -0.03 -0.36 9.75 -39.20 -0.38 -0.74 16 23 C -0.09 -1.01 5.74 -106.84 -0.61 -1.63 16 24 C 0.27 3.41 15.33 -22.47 -0.34 3.07 16 25 N -0.44 -6.42 18.54 41.84 0.78 -5.64 16 26 C -0.04 -0.43 9.75 -39.20 -0.38 -0.81 16 27 C -0.18 -2.52 5.44 -39.50 -0.21 -2.74 16 28 H 0.10 1.23 7.84 -52.48 -0.41 0.81 16 29 H 0.09 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.10 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.09 1.49 7.75 -51.93 -0.40 1.09 16 32 H 0.09 1.49 7.24 -51.93 -0.38 1.11 16 33 H 0.04 0.68 7.18 -51.93 -0.37 0.31 16 34 H 0.05 0.88 2.44 -51.93 -0.13 0.75 16 35 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.08 0.98 7.92 -51.93 -0.41 0.57 16 37 H 0.09 1.21 5.54 -51.93 -0.29 0.93 16 38 H 0.08 0.96 5.06 -51.93 -0.26 0.70 16 39 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 40 H 0.14 2.69 3.13 -51.93 -0.16 2.52 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.14 1.41 8.06 -52.48 -0.42 0.98 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 45 H 0.14 2.01 3.94 -52.49 -0.21 1.80 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -27.57 364.59 -6.63 -34.20 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.57 Total: 9.21 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -2.45 Total: -6.86 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 1.13 Total: -39.03 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.56 Total: -15.93 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -4.67 Total: 12.91 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.57 -6.63 -34.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293947153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.064 kcal (2) G-P(sol) polarization free energy of solvation -27.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds