Wall clock time and date at job start Tue Mar 31 2020 15:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50695 * 119.99946 * 2 1 4 4 N 1.46504 * 109.47228 * 123.88941 * 3 2 1 5 5 C 1.46496 * 119.99814 * 274.48966 * 4 3 2 6 6 C 1.50702 * 109.47350 * 277.12588 * 5 4 3 7 7 H 1.07999 * 119.99713 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00018 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99574 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99991 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46686 * 90.00452 * 10 8 6 12 12 H 1.48491 * 109.46944 * 209.99910 * 10 8 6 13 13 H 1.48494 * 109.47081 * 330.00314 * 10 8 6 14 14 C 1.34777 * 119.99925 * 94.48915 * 4 3 2 15 15 O 1.21285 * 119.99943 * 4.77424 * 14 4 3 16 16 C 1.50699 * 119.99838 * 184.76964 * 14 4 3 17 17 C 1.52999 * 109.47302 * 62.96982 * 16 14 4 18 18 C 1.53007 * 109.47358 * 302.96903 * 16 14 4 19 19 O 1.42904 * 109.47223 * 182.97112 * 16 14 4 20 20 C 1.35763 * 116.99697 * 299.80309 * 19 16 14 21 21 C 1.38960 * 119.90460 * 182.91094 * 20 19 16 22 22 C 1.37732 * 120.09533 * 180.02562 * 21 20 19 23 23 C 1.39752 * 119.90398 * 359.97438 * 22 21 20 24 24 C 1.43200 * 120.09885 * 179.97438 * 23 22 21 25 25 N 8.06174 * 136.74592 * 193.63197 * 2 1 3 26 26 C 1.39757 * 119.81082 * 0.24756 * 23 22 21 27 27 C 1.37726 * 119.90634 * 359.51325 * 26 23 22 28 28 H 1.08004 * 120.00379 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00391 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00015 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47490 * 3.88935 * 3 2 1 32 32 H 1.09006 * 109.47209 * 243.88518 * 3 2 1 33 33 H 1.08997 * 109.47532 * 37.12589 * 5 4 3 34 34 H 1.09003 * 109.47244 * 157.12836 * 5 4 3 35 35 H 0.97003 * 119.99699 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.47438 * 204.30347 * 17 16 14 37 37 H 1.09001 * 109.46510 * 324.30135 * 17 16 14 38 38 H 1.09000 * 109.47143 * 84.29601 * 17 16 14 39 39 H 1.08999 * 109.46845 * 307.89441 * 18 16 14 40 40 H 1.08995 * 109.46612 * 67.88889 * 18 16 14 41 41 H 1.08999 * 109.47287 * 187.89462 * 18 16 14 42 42 H 1.08003 * 119.95204 * 0.02580 * 21 20 19 43 43 H 1.07996 * 120.05050 * 179.97438 * 22 21 20 44 44 H 1.08007 * 120.04592 * 179.74728 * 26 23 22 45 45 H 1.08002 * 119.95453 * 180.23137 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9746 1.3429 1.1466 5 6 2.4900 1.7965 2.4526 6 6 2.5205 3.3023 2.5045 7 1 2.8660 3.8652 1.6499 8 6 2.1075 3.9614 3.6429 9 7 2.1337 5.2755 3.6880 10 14 1.5094 2.9879 5.1207 11 1 2.6581 2.6858 6.0122 12 1 0.5022 3.7861 5.8646 13 1 0.8927 1.7180 4.6602 14 6 4.2586 0.9605 0.9999 15 8 4.6825 0.6678 -0.0981 16 6 5.1676 0.8966 2.2001 17 6 4.6402 -0.1494 3.1843 18 6 5.2074 2.2652 2.8832 19 8 6.4851 0.5350 1.7812 20 6 6.6264 -0.6623 1.1568 21 6 7.8892 -1.1014 0.7782 22 6 8.0370 -2.3151 0.1441 23 6 6.9146 -3.1055 -0.1181 24 6 7.0634 -4.3678 -0.7777 25 7 7.1815 -5.3686 -1.3020 26 6 5.6459 -2.6578 0.2602 27 6 5.5076 -1.4451 0.8983 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3572 2.1324 0.0697 32 1 2.6369 1.3936 -0.9228 33 1 1.4679 1.4485 2.6018 34 1 3.1295 1.3929 3.2376 35 1 1.8435 5.7392 4.4890 36 1 4.9962 0.0837 4.1878 37 1 3.5503 -0.1406 3.1743 38 1 4.9982 -1.1365 2.8918 39 1 5.4478 3.0319 2.1468 40 1 4.2344 2.4788 3.3256 41 1 5.9682 2.2597 3.6637 42 1 8.7561 -0.4902 0.9816 43 1 9.0188 -2.6555 -0.1502 44 1 4.7755 -3.2637 0.0558 45 1 4.5280 -1.1001 1.1943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293947153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:00 Heat of formation + Delta-G solvation = 28.515668 kcal Electronic energy + Delta-G solvation = -28914.374578 eV Core-core repulsion = 25092.350817 eV Total energy + Delta-G solvation = -3822.023761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.62065 -40.34836 -38.88370 -37.40285 -37.20435 -35.60660 -34.46861 -33.38725 -32.10395 -31.32911 -30.14869 -28.32933 -27.37192 -25.14396 -24.59870 -23.90671 -22.95907 -21.32987 -20.32770 -19.95225 -19.02660 -18.72708 -17.75154 -17.46346 -16.79106 -16.53303 -16.26691 -16.08114 -15.69922 -15.27700 -15.06369 -14.96263 -14.71243 -14.64856 -14.54420 -14.43630 -14.24668 -14.06389 -13.71169 -13.41334 -13.25847 -13.18649 -13.13573 -12.86253 -12.73170 -12.66932 -12.54164 -12.29150 -12.02273 -11.90161 -11.83682 -11.73548 -11.51214 -10.79764 -10.71161 -10.28158 -9.99591 -9.51387 -9.08371 -8.25834 -6.31841 -0.11930 0.38061 1.25635 1.43738 1.47564 1.48412 1.55022 1.64008 1.94265 2.02419 2.32013 2.37572 2.89008 2.94818 3.07512 3.35431 3.68986 3.73857 3.87530 3.93158 4.07338 4.15920 4.19750 4.39149 4.49371 4.51893 4.53743 4.60208 4.76023 4.79032 4.83791 4.86343 4.88430 4.97731 5.03542 5.08384 5.10891 5.30669 5.34765 5.42477 5.51203 5.54630 5.64897 5.68575 5.88726 6.16578 6.26801 6.48070 6.54940 6.72415 7.10967 7.31190 8.89795 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.004005 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.687442 B = 6990.232348 C = 7912.840488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.177 4.177 3 C 0.139 3.861 4 N -0.580 5.580 5 C 0.194 3.806 6 C -0.532 4.532 7 H 0.032 0.968 8 C 0.027 3.973 9 N -0.937 5.937 10 Si 0.920 3.080 11 H -0.249 1.249 12 H -0.291 1.291 13 H -0.234 1.234 14 C 0.492 3.508 15 O -0.567 6.567 16 C 0.104 3.896 17 C -0.198 4.198 18 C -0.156 4.156 19 O -0.296 6.296 20 C 0.159 3.841 21 C -0.161 4.161 22 C -0.021 4.021 23 C -0.086 4.086 24 C 0.289 3.711 25 N -0.472 5.472 26 C -0.033 4.033 27 C -0.192 4.192 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.268 0.732 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.040 0.960 40 H 0.126 0.874 41 H 0.085 0.915 42 H 0.156 0.844 43 H 0.166 0.834 44 H 0.145 0.855 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.075 -13.438 0.738 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.017 3.983 4 N -0.310 5.310 5 C 0.073 3.927 6 C -0.570 4.570 7 H 0.050 0.950 8 C -0.173 4.173 9 N -0.576 5.576 10 Si 0.742 3.258 11 H -0.173 1.173 12 H -0.217 1.217 13 H -0.157 1.157 14 C 0.280 3.720 15 O -0.448 6.448 16 C 0.062 3.938 17 C -0.255 4.255 18 C -0.213 4.213 19 O -0.208 6.208 20 C 0.113 3.887 21 C -0.179 4.179 22 C -0.041 4.041 23 C -0.090 4.090 24 C -0.025 4.025 25 N -0.149 5.149 26 C -0.054 4.054 27 C -0.211 4.211 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.128 0.872 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.059 0.941 40 H 0.144 0.856 41 H 0.104 0.896 42 H 0.174 0.826 43 H 0.184 0.816 44 H 0.162 0.838 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.574 -14.810 -0.480 15.508 hybrid contribution -0.761 1.107 0.481 1.427 sum 3.813 -13.703 0.001 14.223 Atomic orbital electron populations 1.24060 0.95178 1.03040 0.97980 1.23132 0.96580 0.97682 1.02205 1.20510 0.92319 0.96439 0.89060 1.47878 1.08931 1.62147 1.12034 1.20305 0.96921 0.93797 0.81668 1.21330 1.44034 0.90956 1.00668 0.94990 1.25673 0.94753 0.95428 1.01474 1.70039 1.48146 1.09315 1.30109 0.86128 0.79819 0.80199 0.79699 1.17326 1.21678 1.15733 1.21256 0.83201 0.76771 0.90815 1.90698 1.74910 1.51556 1.27661 1.21844 0.80685 0.99178 0.92056 1.23020 1.03545 0.98652 1.00264 1.22552 1.07350 0.90741 1.00609 1.86178 1.29494 1.34147 1.70950 1.19549 0.95099 0.84054 0.90036 1.20533 0.95184 0.98053 1.04148 1.21137 0.98506 0.91286 0.93152 1.15893 0.95341 0.90123 1.07603 1.25719 0.92367 0.92350 0.92032 1.81251 1.08899 1.12827 1.11924 1.21008 0.96353 0.94554 0.93469 1.21409 0.98362 0.96177 1.05161 0.88263 0.86113 0.87217 0.90477 0.90847 0.93801 0.91032 0.92250 0.88116 0.89218 0.88931 0.94102 0.85637 0.89601 0.82605 0.81636 0.83766 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 14.32 67.79 0.97 -2.75 16 2 C -0.18 -4.75 9.84 25.65 0.25 -4.50 16 3 C 0.14 4.66 5.94 85.63 0.51 5.17 16 4 N -0.58 -21.00 2.39 -830.49 -1.99 -22.98 16 5 C 0.19 7.30 2.95 85.63 0.25 7.56 16 6 C -0.53 -25.35 7.54 25.60 0.19 -25.16 16 7 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 8 C 0.03 1.30 5.32 84.66 0.45 1.75 16 9 N -0.94 -51.77 13.96 21.45 0.30 -51.47 16 10 Si 0.92 35.22 27.47 68.60 1.88 37.10 16 11 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 12 H -0.29 -11.63 7.11 99.48 0.71 -10.93 16 13 H -0.23 -7.91 6.54 99.48 0.65 -7.25 16 14 C 0.49 17.88 4.68 87.66 0.41 18.29 16 15 O -0.57 -22.82 13.14 15.97 0.21 -22.61 16 16 C 0.10 3.29 0.84 -11.54 -0.01 3.28 16 17 C -0.20 -4.89 7.26 71.98 0.52 -4.36 16 18 C -0.16 -5.41 7.68 71.98 0.55 -4.86 16 19 O -0.30 -9.28 9.64 -71.88 -0.69 -9.98 16 20 C 0.16 4.39 5.39 22.62 0.12 4.51 16 21 C -0.16 -3.46 9.97 22.32 0.22 -3.24 16 22 C -0.02 -0.37 9.75 22.52 0.22 -0.15 16 23 C -0.09 -1.79 5.74 -21.30 -0.12 -1.91 16 24 C 0.29 6.68 15.33 88.33 1.35 8.03 16 25 N -0.47 -12.90 18.54 19.00 0.35 -12.55 16 26 C -0.03 -0.74 9.75 22.52 0.22 -0.52 16 27 C -0.19 -5.07 5.44 22.32 0.12 -4.95 16 28 H 0.10 2.26 7.84 -2.91 -0.02 2.24 16 29 H 0.12 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.11 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.08 2.70 7.75 -2.39 -0.02 2.68 16 32 H 0.07 2.62 7.24 -2.38 -0.02 2.60 16 33 H 0.04 1.60 7.18 -2.39 -0.02 1.59 16 34 H 0.07 2.43 2.44 -2.39 -0.01 2.42 16 35 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 36 H 0.10 2.10 7.92 -2.39 -0.02 2.08 16 37 H 0.09 2.20 5.54 -2.39 -0.01 2.18 16 38 H 0.09 2.04 5.06 -2.39 -0.01 2.03 16 39 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 40 H 0.13 4.76 3.13 -2.39 -0.01 4.75 16 41 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 43 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 44 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 45 H 0.13 3.60 3.94 -2.91 -0.01 3.59 16 Total: -1.00 -62.44 364.59 7.27 -55.17 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.97 Total: 31.14 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 6.24 Total: -3.82 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -1.34 Total: -87.00 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.48 Total: -32.59 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 1.88 Total: 37.10 kcal Total: -62.44 7.27 -55.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293947153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.684 kcal (2) G-P(sol) polarization free energy of solvation -62.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds