Wall clock time and date at job start Tue Mar 31 2020 14:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47377 * 270.41481 * 3 2 1 5 5 O 1.42897 * 109.47382 * 180.02562 * 4 3 2 6 6 C 1.35710 * 117.00199 * 179.97438 * 5 4 3 7 7 C 1.38996 * 119.91193 * 359.71985 * 6 5 4 8 8 C 1.37700 * 120.08650 * 179.76548 * 7 6 5 9 9 C 1.39729 * 119.91351 * 0.48755 * 8 7 6 10 10 C 1.47603 * 120.09083 * 179.78958 * 9 8 7 11 11 O 1.21590 * 120.00243 * 216.19426 * 10 9 8 12 12 N 1.34777 * 120.00049 * 36.18856 * 10 9 8 13 13 C 1.46967 * 120.59015 * 5.49910 * 12 10 9 14 14 C 1.53811 * 108.39545 * 124.75819 * 13 12 10 15 15 N 1.46961 * 108.58212 * 49.63174 * 14 13 12 16 16 C 1.36941 * 120.59002 * 124.62241 * 15 14 13 17 17 H 1.08003 * 120.00106 * 204.99747 * 16 15 14 18 18 C 1.38811 * 120.00271 * 25.00646 * 16 15 14 19 19 N 1.31622 * 119.99674 * 16.53888 * 18 16 15 20 20 Si 1.86798 * 120.00176 * 196.54366 * 18 16 15 21 21 H 1.48494 * 109.47178 * 89.99896 * 20 18 16 22 22 H 1.48507 * 109.46996 * 209.99627 * 20 18 16 23 23 H 1.48498 * 109.47340 * 329.99442 * 20 18 16 24 24 C 1.46957 * 118.81368 * 304.64927 * 15 14 13 25 25 C 1.46961 * 120.59326 * 185.77386 * 12 10 9 26 26 C 1.39734 * 119.82485 * 359.76996 * 9 8 7 27 27 C 1.37707 * 119.91192 * 359.97438 * 26 9 8 28 28 H 4.44648 * 5.63405 * 179.97438 * 4 1 2 29 29 H 1.09008 * 109.46670 * 150.41357 * 3 2 1 30 30 H 1.09001 * 109.47352 * 30.41549 * 3 2 1 31 31 H 1.08995 * 109.47570 * 60.00173 * 4 3 2 32 32 H 1.09003 * 109.47181 * 299.99843 * 4 3 2 33 33 H 1.08004 * 119.95263 * 0.02562 * 7 6 5 34 34 H 1.08006 * 120.04378 * 180.27800 * 8 7 6 35 35 H 1.09000 * 109.60455 * 244.53411 * 13 12 10 36 36 H 1.08998 * 109.61122 * 5.04954 * 13 12 10 37 37 H 1.09002 * 109.73826 * 289.84472 * 14 13 12 38 38 H 1.09006 * 109.67333 * 169.38415 * 14 13 12 39 39 H 0.97007 * 120.00077 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.61358 * 295.47464 * 24 15 14 41 41 H 1.09009 * 109.75234 * 175.05179 * 24 15 14 42 42 H 1.08995 * 109.61116 * 354.95186 * 25 12 10 43 43 H 1.09003 * 109.60653 * 115.29035 * 25 12 10 44 44 H 1.08004 * 120.04604 * 180.02562 * 26 9 8 45 45 H 1.07990 * 119.95717 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.0096 1.4424 5 8 4.5850 -0.0083 1.4424 6 6 5.2012 -0.0162 2.6516 7 6 4.4424 -0.0190 3.8161 8 6 5.0638 -0.0319 5.0449 9 6 6.4591 -0.0317 5.1201 10 6 7.1293 -0.0408 6.4352 11 8 8.1622 0.5804 6.5955 12 7 6.5963 -0.7375 7.4584 13 6 5.4165 -1.5887 7.2494 14 6 5.7543 -3.0118 7.7252 15 7 6.3388 -2.9293 9.0711 16 6 5.7966 -3.6365 10.1108 17 1 5.9361 -3.2962 11.1263 18 6 5.0679 -4.7910 9.8598 19 7 5.1624 -5.3875 8.6903 20 14 3.9531 -5.4978 11.1815 21 1 2.5957 -4.9100 11.0505 22 1 3.8714 -6.9722 11.0237 23 1 4.5059 -5.1732 12.5210 24 6 7.5151 -2.0738 9.2812 25 6 7.1807 -0.6550 8.8043 26 6 7.2183 -0.0234 3.9471 27 6 6.5894 -0.0159 2.7221 28 1 -1.0500 0.0002 0.0001 29 1 3.0089 0.8946 -0.5074 30 1 3.0098 -0.8854 -0.5203 31 1 2.7932 -0.9033 1.9498 32 1 2.7924 0.8766 1.9627 33 1 3.3640 -0.0154 3.7571 34 1 4.4735 -0.0386 5.9493 35 1 4.5770 -1.1976 7.8241 36 1 5.1613 -1.6064 6.1899 37 1 6.4713 -3.4678 7.0424 38 1 4.8459 -3.6134 7.7571 39 1 4.6528 -6.1941 8.5147 40 1 8.3574 -2.4630 8.7093 41 1 7.7708 -2.0528 10.3406 42 1 8.0907 -0.0560 8.7718 43 1 6.4649 -0.1962 9.4864 44 1 8.2970 -0.0237 4.0011 45 1 7.1754 -0.0099 1.8150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295049620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:27 Heat of formation + Delta-G solvation = 49.217942 kcal Electronic energy + Delta-G solvation = -27196.823860 eV Core-core repulsion = 23375.697817 eV Total energy + Delta-G solvation = -3821.126043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.61647 -39.56554 -37.44681 -36.67998 -34.93155 -33.94426 -31.94301 -31.08011 -30.86734 -30.22735 -29.44058 -26.96158 -24.94090 -24.14145 -23.04900 -22.81180 -21.94143 -20.51356 -19.13152 -18.77039 -17.95567 -17.42454 -16.59218 -16.39968 -16.17275 -15.48797 -14.89910 -14.83735 -14.58638 -14.34639 -14.15453 -13.87354 -13.86095 -13.68386 -13.56081 -13.29377 -13.13066 -12.60233 -12.53895 -12.28153 -12.22073 -11.64636 -11.37107 -11.14247 -10.97562 -10.85348 -10.73933 -10.69965 -10.51983 -10.49721 -10.22051 -10.02241 -9.87750 -9.46236 -9.07211 -8.62745 -8.36610 -8.18423 -6.76416 -5.85865 -3.29556 0.99798 1.24821 2.19727 2.41221 2.94501 3.01046 3.32594 3.38976 3.40622 3.42616 3.82956 4.06582 4.42510 4.48634 4.53420 4.67322 4.77062 4.80131 4.88421 5.14382 5.23140 5.27807 5.34600 5.35726 5.39913 5.51170 5.59083 5.78512 5.82438 5.89623 5.90797 6.01901 6.09204 6.14267 6.21941 6.32985 6.39190 6.42797 6.54810 6.77775 6.93167 7.13814 7.17029 7.22322 7.51950 7.68314 7.90007 8.33039 8.53752 9.10403 9.73203 10.28228 11.20707 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.002985 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.775591 B = 9379.344300 C =11387.281119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.193 4.193 3 C -0.008 4.008 4 C 0.062 3.938 5 O -0.313 6.313 6 C 0.148 3.852 7 C -0.217 4.217 8 C -0.045 4.045 9 C -0.159 4.159 10 C 0.555 3.445 11 O -0.557 6.557 12 N -0.590 5.590 13 C 0.067 3.933 14 C 0.153 3.847 15 N -0.593 5.593 16 C -0.250 4.250 17 H 0.070 0.930 18 C -0.002 4.002 19 N -0.905 5.905 20 Si 0.907 3.093 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.132 3.868 25 C 0.096 3.904 26 C -0.026 4.026 27 C -0.159 4.159 28 H 0.220 0.780 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.022 0.978 38 H 0.111 0.889 39 H 0.255 0.745 40 H 0.024 0.976 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.138 0.862 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 11.365 -15.565 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C -0.045 4.045 4 C -0.013 4.013 5 O -0.226 6.226 6 C 0.102 3.898 7 C -0.235 4.235 8 C -0.064 4.064 9 C -0.162 4.162 10 C 0.344 3.656 11 O -0.437 6.437 12 N -0.322 5.322 13 C -0.057 4.057 14 C 0.026 3.974 15 N -0.316 5.316 16 C -0.379 4.379 17 H 0.088 0.912 18 C -0.200 4.200 19 N -0.550 5.550 20 Si 0.737 3.263 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.004 3.996 25 C -0.028 4.028 26 C -0.045 4.045 27 C -0.178 4.178 28 H 0.237 0.763 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.040 0.960 38 H 0.128 0.872 39 H 0.065 0.935 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.156 0.844 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.305 11.497 -15.665 20.142 hybrid contribution -1.118 -0.563 0.788 1.480 sum -6.423 10.934 -14.876 19.548 Atomic orbital electron populations 1.24988 0.95981 1.00712 0.99056 1.22600 0.93964 1.00935 1.01793 1.18429 0.84872 1.05079 0.96116 1.22706 0.78573 1.02592 0.97418 1.85943 1.20879 1.88377 1.27417 1.19143 0.92231 0.94662 0.83742 1.21165 1.00221 1.10143 0.92007 1.21341 0.93497 0.93680 0.97866 1.19871 0.93796 1.08561 0.93948 1.18230 0.84185 0.79270 0.83888 1.90723 1.23766 1.45557 1.83663 1.47977 1.30765 1.44354 1.09059 1.23227 0.86762 0.94714 1.00979 1.21425 1.00582 0.90175 0.85217 1.44052 1.29194 1.51630 1.06684 1.19278 1.28160 1.02810 0.87656 0.91247 1.25012 1.01881 0.95812 0.97265 1.69977 1.42949 1.19376 1.22723 0.86216 0.80910 0.78002 0.81215 1.21429 1.21736 1.20443 1.21282 0.90291 0.88960 0.99018 1.22219 0.98630 1.00027 0.81932 1.20995 1.00340 0.93181 0.89968 1.20327 0.91096 1.07764 0.98582 0.76297 0.88365 0.88254 0.91091 0.91322 0.84972 0.84365 0.91778 0.89819 0.95988 0.87153 0.93487 0.95775 0.91509 0.89888 0.91842 0.84391 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.33 19.25 29.55 0.57 -0.76 16 2 C -0.19 -1.52 13.34 -37.12 -0.50 -2.02 16 3 C -0.01 -0.06 6.07 -29.52 -0.18 -0.24 16 4 C 0.06 0.50 4.69 37.16 0.17 0.67 16 5 O -0.31 -3.23 10.12 -18.83 -0.19 -3.42 16 6 C 0.15 1.73 6.70 -39.02 -0.26 1.47 16 7 C -0.22 -2.50 9.01 -39.50 -0.36 -2.85 16 8 C -0.05 -0.60 7.33 -39.22 -0.29 -0.89 16 9 C -0.16 -2.44 5.29 -104.96 -0.55 -2.99 16 10 C 0.56 10.21 7.36 -12.44 -0.09 10.12 16 11 O -0.56 -11.59 16.26 5.29 0.09 -11.51 16 12 N -0.59 -10.96 2.94 -173.42 -0.51 -11.47 16 13 C 0.07 1.21 5.01 -3.37 -0.02 1.20 16 14 C 0.15 3.50 5.57 -3.37 -0.02 3.48 16 15 N -0.59 -14.46 2.98 -171.77 -0.51 -14.97 16 16 C -0.25 -6.60 9.62 -15.06 -0.14 -6.74 16 17 H 0.07 1.80 7.87 -52.48 -0.41 1.38 16 18 C 0.00 -0.05 4.97 -17.43 -0.09 -0.14 16 19 N -0.91 -25.27 10.89 55.49 0.60 -24.66 16 20 Si 0.91 21.00 29.58 -169.99 -5.03 15.97 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 C 0.13 2.77 6.67 -3.60 -0.02 2.74 16 25 C 0.10 1.78 6.60 -3.60 -0.02 1.76 16 26 C -0.03 -0.36 9.60 -39.22 -0.38 -0.73 16 27 C -0.16 -1.89 9.97 -39.49 -0.39 -2.29 16 28 H 0.22 0.81 7.80 -54.09 -0.42 0.39 16 29 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.56 7.66 -51.93 -0.40 0.16 16 32 H 0.07 0.51 7.64 -51.93 -0.40 0.11 16 33 H 0.13 1.22 6.28 -52.48 -0.33 0.89 16 34 H 0.14 1.74 6.13 -52.48 -0.32 1.41 16 35 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 36 H 0.08 1.35 4.37 -51.93 -0.23 1.12 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.11 2.78 5.68 -51.93 -0.29 2.49 16 39 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 1.33 7.93 -51.92 -0.41 0.91 16 42 H 0.08 1.51 6.99 -51.93 -0.36 1.14 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.14 1.81 8.01 -52.48 -0.42 1.39 16 45 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -31.83 372.70 -8.59 -40.42 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.09 Total: 2.23 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.57 Total: 1.80 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.42 Total: -51.10 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.10 Total: -14.93 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.83 -8.59 -40.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295049620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.641 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds