Wall clock time and date at job start Tue Mar 31 2020 14:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47377 * 270.41481 * 3 2 1 5 5 O 1.42897 * 109.47382 * 180.02562 * 4 3 2 6 6 C 1.35710 * 117.00199 * 179.97438 * 5 4 3 7 7 C 1.38996 * 119.91193 * 359.71985 * 6 5 4 8 8 C 1.37700 * 120.08650 * 179.76548 * 7 6 5 9 9 C 1.39729 * 119.91351 * 0.48755 * 8 7 6 10 10 C 1.47603 * 120.09083 * 179.78958 * 9 8 7 11 11 O 1.21590 * 120.00243 * 216.19426 * 10 9 8 12 12 N 1.34777 * 120.00049 * 36.18856 * 10 9 8 13 13 C 1.46967 * 120.59015 * 5.49910 * 12 10 9 14 14 C 1.53811 * 108.39545 * 124.75819 * 13 12 10 15 15 N 1.46961 * 108.58212 * 49.63174 * 14 13 12 16 16 C 1.36941 * 120.59002 * 124.62241 * 15 14 13 17 17 H 1.08003 * 120.00106 * 204.99747 * 16 15 14 18 18 C 1.38811 * 120.00271 * 25.00646 * 16 15 14 19 19 N 1.31622 * 119.99674 * 16.53888 * 18 16 15 20 20 Si 1.86798 * 120.00176 * 196.54366 * 18 16 15 21 21 H 1.48494 * 109.47178 * 89.99896 * 20 18 16 22 22 H 1.48507 * 109.46996 * 209.99627 * 20 18 16 23 23 H 1.48498 * 109.47340 * 329.99442 * 20 18 16 24 24 C 1.46957 * 118.81368 * 304.64927 * 15 14 13 25 25 C 1.46961 * 120.59326 * 185.77386 * 12 10 9 26 26 C 1.39734 * 119.82485 * 359.76996 * 9 8 7 27 27 C 1.37707 * 119.91192 * 359.97438 * 26 9 8 28 28 H 4.44648 * 5.63405 * 179.97438 * 4 1 2 29 29 H 1.09008 * 109.46670 * 150.41357 * 3 2 1 30 30 H 1.09001 * 109.47352 * 30.41549 * 3 2 1 31 31 H 1.08995 * 109.47570 * 60.00173 * 4 3 2 32 32 H 1.09003 * 109.47181 * 299.99843 * 4 3 2 33 33 H 1.08004 * 119.95263 * 0.02562 * 7 6 5 34 34 H 1.08006 * 120.04378 * 180.27800 * 8 7 6 35 35 H 1.09000 * 109.60455 * 244.53411 * 13 12 10 36 36 H 1.08998 * 109.61122 * 5.04954 * 13 12 10 37 37 H 1.09002 * 109.73826 * 289.84472 * 14 13 12 38 38 H 1.09006 * 109.67333 * 169.38415 * 14 13 12 39 39 H 0.97007 * 120.00077 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.61358 * 295.47464 * 24 15 14 41 41 H 1.09009 * 109.75234 * 175.05179 * 24 15 14 42 42 H 1.08995 * 109.61116 * 354.95186 * 25 12 10 43 43 H 1.09003 * 109.60653 * 115.29035 * 25 12 10 44 44 H 1.08004 * 120.04604 * 180.02562 * 26 9 8 45 45 H 1.07990 * 119.95717 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.0096 1.4424 5 8 4.5850 -0.0083 1.4424 6 6 5.2012 -0.0162 2.6516 7 6 4.4424 -0.0190 3.8161 8 6 5.0638 -0.0319 5.0449 9 6 6.4591 -0.0317 5.1201 10 6 7.1293 -0.0408 6.4352 11 8 8.1622 0.5804 6.5955 12 7 6.5963 -0.7375 7.4584 13 6 5.4165 -1.5887 7.2494 14 6 5.7543 -3.0118 7.7252 15 7 6.3388 -2.9293 9.0711 16 6 5.7966 -3.6365 10.1108 17 1 5.9361 -3.2962 11.1263 18 6 5.0679 -4.7910 9.8598 19 7 5.1624 -5.3875 8.6903 20 14 3.9531 -5.4978 11.1815 21 1 2.5957 -4.9100 11.0505 22 1 3.8714 -6.9722 11.0237 23 1 4.5059 -5.1732 12.5210 24 6 7.5151 -2.0738 9.2812 25 6 7.1807 -0.6550 8.8043 26 6 7.2183 -0.0234 3.9471 27 6 6.5894 -0.0159 2.7221 28 1 -1.0500 0.0002 0.0001 29 1 3.0089 0.8946 -0.5074 30 1 3.0098 -0.8854 -0.5203 31 1 2.7932 -0.9033 1.9498 32 1 2.7924 0.8766 1.9627 33 1 3.3640 -0.0154 3.7571 34 1 4.4735 -0.0386 5.9493 35 1 4.5770 -1.1976 7.8241 36 1 5.1613 -1.6064 6.1899 37 1 6.4713 -3.4678 7.0424 38 1 4.8459 -3.6134 7.7571 39 1 4.6528 -6.1941 8.5147 40 1 8.3574 -2.4630 8.7093 41 1 7.7708 -2.0528 10.3406 42 1 8.0907 -0.0560 8.7718 43 1 6.4649 -0.1962 9.4864 44 1 8.2970 -0.0237 4.0011 45 1 7.1754 -0.0099 1.8150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295049620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:26 Heat of formation + Delta-G solvation = 31.839785 kcal Electronic energy + Delta-G solvation = -27197.577434 eV Core-core repulsion = 23375.697817 eV Total energy + Delta-G solvation = -3821.879616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.72468 -40.73468 -38.66296 -38.13765 -35.71762 -35.46818 -33.48529 -32.35425 -31.84889 -31.57300 -30.49293 -28.67078 -25.95514 -25.56141 -24.52592 -24.09811 -23.01513 -22.00002 -20.51321 -19.57281 -19.04287 -18.56802 -17.87486 -17.51191 -17.27124 -16.86306 -16.61066 -16.19093 -15.67544 -15.50311 -15.41278 -15.23311 -14.97992 -14.83722 -14.81119 -14.57931 -14.36950 -13.98322 -13.56732 -13.42117 -13.28214 -13.12738 -12.99552 -12.67412 -12.49375 -12.24355 -12.05132 -12.02421 -11.90045 -11.73817 -11.68837 -11.25553 -11.04496 -10.92331 -10.59420 -10.07745 -9.88093 -9.27864 -8.69265 -7.86621 -5.34435 -0.06771 0.28125 1.50050 1.51251 1.59931 1.60038 1.69382 1.88683 2.01599 2.24900 2.51594 2.73061 3.26621 3.49216 3.58579 3.59001 3.68471 3.82708 3.98468 4.03123 4.14115 4.22200 4.25748 4.29227 4.34358 4.40579 4.51388 4.56379 4.60335 4.75292 4.79521 4.84464 4.85554 4.93632 5.03380 5.09127 5.12982 5.20144 5.22912 5.33273 5.53562 5.58791 5.61028 5.67741 6.28951 6.34717 6.43353 6.65810 7.08976 7.10730 7.78428 8.30477 9.17523 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.002985 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.775591 B = 9379.344300 C =11387.281119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.224 4.224 3 C -0.005 4.005 4 C 0.058 3.942 5 O -0.314 6.314 6 C 0.153 3.847 7 C -0.212 4.212 8 C -0.048 4.048 9 C -0.186 4.186 10 C 0.555 3.445 11 O -0.587 6.587 12 N -0.596 5.596 13 C 0.086 3.914 14 C 0.158 3.842 15 N -0.609 5.609 16 C -0.260 4.260 17 H 0.073 0.927 18 C -0.051 4.051 19 N -0.935 5.935 20 Si 0.972 3.028 21 H -0.281 1.281 22 H -0.298 1.298 23 H -0.271 1.271 24 C 0.132 3.868 25 C 0.105 3.895 26 C -0.033 4.033 27 C -0.158 4.158 28 H 0.245 0.755 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.146 0.854 35 H 0.077 0.923 36 H 0.107 0.893 37 H -0.008 1.008 38 H 0.088 0.912 39 H 0.252 0.748 40 H 0.007 0.993 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.136 0.864 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 12.393 -16.386 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.224 4.224 3 C -0.042 4.042 4 C -0.017 4.017 5 O -0.227 6.227 6 C 0.106 3.894 7 C -0.230 4.230 8 C -0.066 4.066 9 C -0.189 4.189 10 C 0.346 3.654 11 O -0.470 6.470 12 N -0.327 5.327 13 C -0.038 4.038 14 C 0.032 3.968 15 N -0.333 5.333 16 C -0.390 4.390 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.800 3.200 21 H -0.208 1.208 22 H -0.225 1.225 23 H -0.196 1.196 24 C 0.005 3.995 25 C -0.019 4.019 26 C -0.052 4.052 27 C -0.176 4.176 28 H 0.261 0.739 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.176 0.824 34 H 0.163 0.837 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.010 0.990 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.154 0.846 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.169 12.550 -16.493 21.930 hybrid contribution -0.541 -0.876 0.928 1.386 sum -7.710 11.675 -15.565 20.929 Atomic orbital electron populations 1.25763 0.96916 0.99795 0.97959 1.22997 0.94696 1.01872 1.02831 1.18414 0.84538 1.05769 0.95442 1.22894 0.77145 1.03158 0.98494 1.85952 1.22306 1.87839 1.26603 1.19271 0.92338 0.93371 0.84371 1.21408 1.01533 1.08900 0.91167 1.21401 0.92565 0.93677 0.98957 1.19765 0.94846 1.11632 0.92672 1.18701 0.83691 0.78315 0.84660 1.90693 1.25193 1.46809 1.84257 1.48033 1.30914 1.44529 1.09202 1.23014 0.86806 0.91503 1.02437 1.21247 0.98519 0.92701 0.84344 1.44318 1.30313 1.51915 1.06742 1.19592 1.28047 1.02988 0.88364 0.90948 1.25749 1.03283 0.96309 0.99246 1.70141 1.43828 1.19699 1.24498 0.85199 0.79162 0.76587 0.79054 1.20785 1.22466 1.19634 1.21354 0.88789 0.89825 0.99517 1.22069 0.99288 0.98147 0.82419 1.21051 1.00379 0.93503 0.90276 1.20515 0.91643 1.06879 0.98581 0.73860 0.87520 0.87809 0.90790 0.90412 0.82429 0.83688 0.90503 0.87509 0.99019 0.89421 0.93914 0.97499 0.90544 0.89466 0.90513 0.84631 0.82542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 19.25 74.32 1.43 -0.79 16 2 C -0.22 -3.11 13.34 31.12 0.42 -2.70 16 3 C -0.01 -0.06 6.07 28.79 0.17 0.11 16 4 C 0.06 0.77 4.69 71.98 0.34 1.11 16 5 O -0.31 -5.66 10.12 -90.31 -0.91 -6.57 16 6 C 0.15 3.21 6.70 22.63 0.15 3.36 16 7 C -0.21 -4.33 9.01 22.32 0.20 -4.12 16 8 C -0.05 -1.17 7.33 22.50 0.16 -1.01 16 9 C -0.19 -5.58 5.29 -20.08 -0.11 -5.69 16 10 C 0.56 20.34 7.36 86.72 0.64 20.98 16 11 O -0.59 -24.63 16.26 -4.00 -0.07 -24.69 16 12 N -0.60 -21.91 2.94 -820.83 -2.41 -24.32 16 13 C 0.09 3.06 5.01 86.56 0.43 3.49 16 14 C 0.16 7.39 5.57 86.56 0.48 7.87 16 15 N -0.61 -30.06 2.98 -697.36 -2.08 -32.14 16 16 C -0.26 -13.78 9.62 84.03 0.81 -12.97 16 17 H 0.07 3.71 7.87 -2.91 -0.02 3.69 16 18 C -0.05 -2.73 4.97 84.86 0.42 -2.31 16 19 N -0.94 -53.17 10.89 21.65 0.24 -52.93 16 20 Si 0.97 43.17 29.58 68.60 2.03 45.20 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 C 0.13 5.58 6.67 86.42 0.58 6.16 16 25 C 0.10 3.85 6.60 86.42 0.57 4.42 16 26 C -0.03 -0.89 9.60 22.51 0.22 -0.67 16 27 C -0.16 -3.47 9.97 22.33 0.22 -3.25 16 28 H 0.25 1.17 7.80 -4.42 -0.03 1.13 16 29 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 32 H 0.08 0.92 7.64 -2.39 -0.02 0.90 16 33 H 0.16 2.37 6.28 -2.91 -0.02 2.35 16 34 H 0.15 3.33 6.13 -2.91 -0.02 3.31 16 35 H 0.08 2.58 8.11 -2.39 -0.02 2.56 16 36 H 0.11 3.33 4.37 -2.39 -0.01 3.32 16 37 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.09 4.52 5.68 -2.38 -0.01 4.51 16 39 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 40 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.08 3.03 7.93 -2.38 -0.02 3.01 16 42 H 0.09 3.15 6.99 -2.39 -0.02 3.13 16 43 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.14 3.58 8.01 -2.91 -0.02 3.56 16 45 H 0.16 2.71 8.06 -2.92 -0.02 2.69 16 Total: -1.00 -68.77 372.70 4.93 -63.84 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 1.00 Total: 17.61 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 7.14 Total: 14.01 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -4.26 Total: -109.39 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.98 Total: -31.26 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -68.77 4.93 -63.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295049620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.681 kcal (2) G-P(sol) polarization free energy of solvation -68.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds