Wall clock time and date at job start Tue Mar 31 2020 16:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47194 * 2 1 4 4 N 1.46508 * 109.47043 * 180.02562 * 3 2 1 5 5 C 1.37090 * 119.99864 * 263.61186 * 4 3 2 6 6 H 1.08003 * 119.99750 * 142.25575 * 5 4 3 7 7 C 1.38953 * 120.00176 * 322.25915 * 5 4 3 8 8 N 1.31419 * 119.99936 * 157.61738 * 7 5 4 9 9 Si 1.86795 * 120.00205 * 337.61485 * 7 5 4 10 10 H 1.48499 * 109.46850 * 95.69865 * 9 7 5 11 11 H 1.48493 * 109.47602 * 215.70263 * 9 7 5 12 12 H 1.48503 * 109.46766 * 335.70676 * 9 7 5 13 13 C 1.34777 * 119.99805 * 83.61743 * 4 3 2 14 14 O 1.21288 * 120.00044 * 0.02562 * 13 4 3 15 15 C 1.50697 * 119.99721 * 179.97438 * 13 4 3 16 16 C 1.52996 * 109.47045 * 179.97438 * 15 13 4 17 17 C 1.50706 * 109.47213 * 180.02562 * 16 15 13 18 18 N 1.30358 * 125.47945 * 89.69289 * 17 16 15 19 19 C 1.34142 * 108.90305 * 179.89679 * 18 17 16 20 20 C 1.35767 * 107.51345 * 0.36605 * 19 18 17 21 21 C 1.47835 * 126.58385 * 179.79889 * 20 19 18 22 22 C 1.39573 * 120.14255 * 179.70207 * 21 20 19 23 23 C 1.37959 * 119.85020 * 179.72528 * 22 21 20 24 24 C 1.38355 * 120.14414 * 0.52772 * 23 22 21 25 25 C 1.38356 * 120.29459 * 359.76894 * 24 23 22 26 26 C 1.37966 * 120.14176 * 359.95679 * 25 24 23 27 27 O 1.33997 * 125.48317 * 270.00055 * 17 16 15 28 28 H 1.09002 * 109.46877 * 300.00278 * 1 2 3 29 29 H 1.09002 * 109.47466 * 59.99247 * 1 2 3 30 30 H 1.08997 * 109.47399 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46809 * 240.00271 * 2 1 3 32 32 H 1.08999 * 109.47661 * 120.00009 * 2 1 3 33 33 H 1.09001 * 109.47021 * 60.00402 * 3 2 1 34 34 H 1.09002 * 109.47657 * 300.00174 * 3 2 1 35 35 H 0.96996 * 120.00116 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47183 * 59.99583 * 15 13 4 37 37 H 1.09003 * 109.47404 * 300.00257 * 15 13 4 38 38 H 1.08999 * 109.46938 * 60.00318 * 16 15 13 39 39 H 1.08999 * 109.47401 * 299.99555 * 16 15 13 40 40 H 1.08004 * 126.24298 * 180.14617 * 19 18 17 41 41 H 1.07995 * 120.07405 * 359.97438 * 22 21 20 42 42 H 1.08001 * 119.93264 * 180.27703 * 23 22 21 43 43 H 1.08005 * 119.85532 * 179.74408 * 24 23 22 44 44 H 1.08002 * 119.93281 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.07317 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5744 1.1790 6 1 5.1015 1.0162 1.3395 7 6 3.7147 2.4261 2.1682 8 7 4.0761 2.2475 3.4190 9 14 2.5608 3.8250 1.7201 10 1 1.1554 3.3943 1.9311 11 1 2.8521 5.0013 2.5783 12 1 2.7574 4.1914 0.2945 13 6 4.1784 1.3129 -1.1609 14 8 3.5715 1.1967 -2.2046 15 6 5.6854 1.3134 -1.1616 16 6 6.1947 1.1525 -2.5953 17 6 7.7018 1.1524 -2.5959 18 7 8.4584 0.0981 -2.4722 19 6 9.7441 0.4778 -2.5197 20 6 9.7663 1.8268 -2.6716 21 6 10.9677 2.6829 -2.7683 22 6 10.8339 4.0627 -2.9299 23 6 11.9590 4.8566 -3.0137 24 6 13.2180 4.2865 -2.9488 25 6 13.3576 2.9187 -2.7948 26 6 12.2406 2.1141 -2.7041 27 8 8.4796 2.2367 -2.7179 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9565 -0.8900 35 1 3.7439 2.8423 4.1095 36 1 6.0493 0.4863 -0.5520 37 1 6.0486 2.2551 -0.7501 38 1 5.8309 1.9794 -3.2051 39 1 5.8317 0.2105 -3.0063 40 1 10.6046 -0.1708 -2.4466 41 1 9.8517 4.5084 -2.9852 42 1 11.8570 5.9250 -3.1343 43 1 14.0957 4.9120 -3.0191 44 1 14.3432 2.4798 -2.7453 45 1 12.3509 1.0465 -2.5835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299144946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:57 Heat of formation + Delta-G solvation = 6.837177 kcal Electronic energy + Delta-G solvation = -26748.029492 eV Core-core repulsion = 22925.065681 eV Total energy + Delta-G solvation = -3822.963811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.22868 -39.25429 -38.98664 -35.53615 -34.75614 -33.68264 -32.99793 -32.04900 -31.62105 -31.24093 -28.38624 -26.34007 -25.20323 -23.98698 -23.62095 -22.51010 -21.49368 -21.16162 -20.63341 -19.00523 -17.92194 -17.15438 -16.53813 -16.37342 -16.09247 -15.83365 -15.39918 -15.07492 -14.74729 -14.21482 -14.14051 -14.02774 -13.70894 -13.38940 -13.19502 -13.14433 -13.04669 -12.87319 -12.39343 -12.16548 -11.84373 -11.72382 -11.52134 -11.47382 -11.36079 -11.19951 -10.99854 -10.83230 -10.69748 -10.46820 -10.40930 -10.08428 -9.94481 -9.80370 -9.26691 -9.24394 -8.66606 -8.08066 -7.84917 -6.54668 -4.13576 0.49135 1.09866 1.86948 2.59068 2.75689 3.01105 3.17747 3.25913 3.58737 3.66854 4.01237 4.08248 4.43289 4.45617 4.65082 4.66353 4.83032 4.89208 4.96896 5.11582 5.19205 5.42907 5.49011 5.50302 5.57118 5.61679 5.67009 5.70722 5.83269 5.85406 5.94052 6.03296 6.14354 6.18319 6.20345 6.28857 6.30640 6.34581 6.35809 6.41535 6.42839 6.52763 6.62212 6.76301 6.89434 7.32174 7.80359 8.01819 8.19208 8.88778 9.28431 9.62834 10.55857 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.002640 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.191597 B =10602.776012 C =11519.650511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.104 3.896 4 N -0.460 5.460 5 C -0.349 4.349 6 H 0.105 0.895 7 C 0.070 3.930 8 N -0.855 5.855 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.261 1.261 13 C 0.481 3.519 14 O -0.600 6.600 15 C -0.115 4.115 16 C -0.010 4.010 17 C 0.219 3.781 18 N -0.484 5.484 19 C -0.014 4.014 20 C -0.025 4.025 21 C -0.005 4.005 22 C -0.102 4.102 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.100 4.100 27 O -0.193 6.193 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.276 0.724 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.184 0.816 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.126 2.110 -10.108 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.019 4.019 4 N -0.180 5.180 5 C -0.476 4.476 6 H 0.122 0.878 7 C -0.138 4.138 8 N -0.490 5.490 9 Si 0.700 3.300 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.185 1.185 13 C 0.271 3.729 14 O -0.486 6.486 15 C -0.156 4.156 16 C -0.049 4.049 17 C 0.014 3.986 18 N -0.212 5.212 19 C -0.154 4.154 20 C -0.078 4.078 21 C -0.005 4.005 22 C -0.121 4.121 23 C -0.134 4.134 24 C -0.135 4.135 25 C -0.134 4.134 26 C -0.118 4.118 27 O -0.080 6.080 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.201 0.799 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.545 1.550 -10.309 16.311 hybrid contribution -0.180 1.442 0.218 1.470 sum 12.365 2.992 -10.091 16.238 Atomic orbital electron populations 1.21705 0.96361 1.01082 1.01353 1.21767 0.94837 0.97912 1.02542 1.21653 0.82467 0.96764 1.01022 1.43739 1.04025 1.63948 1.06283 1.19089 1.11033 1.26586 0.90892 0.87777 1.25338 0.96820 0.97096 0.94593 1.69780 1.43377 1.36212 0.99613 0.86985 0.80655 0.82481 0.79839 1.20000 1.21366 1.18473 1.20143 0.89112 0.80430 0.83209 1.90548 1.70435 1.55968 1.31693 1.21333 0.94468 1.05075 0.94690 1.20011 0.79146 1.06249 0.99478 1.26682 0.96356 0.78233 0.97335 1.70418 1.01735 1.30058 1.18948 1.23312 0.95311 0.92417 1.04346 1.21329 0.82457 0.94024 1.09959 1.17642 0.88669 0.92052 1.02155 1.21338 0.99646 0.92465 0.98604 1.21118 0.92222 1.00085 0.99929 1.21287 0.97515 0.95176 0.99535 1.21047 0.98384 0.93753 1.00172 1.21049 0.90590 1.00305 0.99864 1.84455 1.15947 1.38212 1.69415 0.93043 0.93019 0.93006 0.91790 0.91395 0.91424 0.91743 0.91412 0.88911 0.88818 0.88398 0.86989 0.79898 0.85288 0.85493 0.85744 0.85342 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 37.15 0.37 -1.95 16 2 C -0.13 -2.55 6.21 -26.73 -0.17 -2.71 16 3 C 0.10 2.28 3.93 -4.04 -0.02 2.26 16 4 N -0.46 -10.87 2.18 -114.81 -0.25 -11.12 16 5 C -0.35 -8.89 9.05 -14.94 -0.14 -9.03 16 6 H 0.10 2.78 7.23 -52.48 -0.38 2.40 16 7 C 0.07 1.80 5.26 -17.46 -0.09 1.71 16 8 N -0.86 -23.24 13.96 55.50 0.77 -22.46 16 9 Si 0.87 20.14 25.06 -169.99 -4.26 15.88 16 10 H -0.27 -6.06 6.69 56.52 0.38 -5.68 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.48 10.76 7.58 -10.99 -0.08 10.67 16 14 O -0.60 -14.13 15.67 5.55 0.09 -14.05 16 15 C -0.12 -2.19 4.38 -27.89 -0.12 -2.31 16 16 C -0.01 -0.17 5.13 -27.88 -0.14 -0.31 16 17 C 0.22 3.62 7.58 -12.90 -0.10 3.52 16 18 N -0.48 -8.05 11.27 -10.82 -0.12 -8.17 16 19 C -0.01 -0.19 11.29 -17.43 -0.20 -0.39 16 20 C -0.02 -0.35 7.07 -36.54 -0.26 -0.61 16 21 C 0.00 -0.05 5.87 -104.98 -0.62 -0.67 16 22 C -0.10 -1.14 9.73 -39.19 -0.38 -1.52 16 23 C -0.12 -1.03 10.03 -39.64 -0.40 -1.43 16 24 C -0.12 -0.92 10.04 -39.49 -0.40 -1.32 16 25 C -0.12 -0.91 10.03 -39.64 -0.40 -1.31 16 26 C -0.10 -0.94 9.57 -39.19 -0.38 -1.32 16 27 O -0.19 -3.09 10.59 4.23 0.04 -3.05 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.07 1.52 3.65 -51.93 -0.19 1.33 16 34 H 0.06 1.40 7.62 -51.93 -0.40 1.00 16 35 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.09 1.78 7.67 -51.93 -0.40 1.39 16 37 H 0.09 1.80 8.10 -51.93 -0.42 1.37 16 38 H 0.10 1.54 8.10 -51.93 -0.42 1.12 16 39 H 0.11 1.82 8.10 -51.93 -0.42 1.40 16 40 H 0.18 1.88 7.30 -52.48 -0.38 1.50 16 41 H 0.13 1.43 7.95 -52.49 -0.42 1.01 16 42 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 45 H 0.13 0.96 7.04 -52.49 -0.37 0.59 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -30.17 378.27 -7.87 -38.03 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.34 Total: 5.95 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -3.51 Total: -6.72 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.40 Total: -41.75 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.13 Total: -17.10 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.26 Total: 15.88 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.17 -7.87 -38.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299144946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.870 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds