Wall clock time and date at job start Tue Mar 31 2020 16:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47194 * 2 1 4 4 N 1.46508 * 109.47043 * 180.02562 * 3 2 1 5 5 C 1.37090 * 119.99864 * 263.61186 * 4 3 2 6 6 H 1.08003 * 119.99750 * 142.25575 * 5 4 3 7 7 C 1.38953 * 120.00176 * 322.25915 * 5 4 3 8 8 N 1.31419 * 119.99936 * 157.61738 * 7 5 4 9 9 Si 1.86795 * 120.00205 * 337.61485 * 7 5 4 10 10 H 1.48499 * 109.46850 * 95.69865 * 9 7 5 11 11 H 1.48493 * 109.47602 * 215.70263 * 9 7 5 12 12 H 1.48503 * 109.46766 * 335.70676 * 9 7 5 13 13 C 1.34777 * 119.99805 * 83.61743 * 4 3 2 14 14 O 1.21288 * 120.00044 * 0.02562 * 13 4 3 15 15 C 1.50697 * 119.99721 * 179.97438 * 13 4 3 16 16 C 1.52996 * 109.47045 * 179.97438 * 15 13 4 17 17 C 1.50706 * 109.47213 * 180.02562 * 16 15 13 18 18 N 1.30358 * 125.47945 * 89.69289 * 17 16 15 19 19 C 1.34142 * 108.90305 * 179.89679 * 18 17 16 20 20 C 1.35767 * 107.51345 * 0.36605 * 19 18 17 21 21 C 1.47835 * 126.58385 * 179.79889 * 20 19 18 22 22 C 1.39573 * 120.14255 * 179.70207 * 21 20 19 23 23 C 1.37959 * 119.85020 * 179.72528 * 22 21 20 24 24 C 1.38355 * 120.14414 * 0.52772 * 23 22 21 25 25 C 1.38356 * 120.29459 * 359.76894 * 24 23 22 26 26 C 1.37966 * 120.14176 * 359.95679 * 25 24 23 27 27 O 1.33997 * 125.48317 * 270.00055 * 17 16 15 28 28 H 1.09002 * 109.46877 * 300.00278 * 1 2 3 29 29 H 1.09002 * 109.47466 * 59.99247 * 1 2 3 30 30 H 1.08997 * 109.47399 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46809 * 240.00271 * 2 1 3 32 32 H 1.08999 * 109.47661 * 120.00009 * 2 1 3 33 33 H 1.09001 * 109.47021 * 60.00402 * 3 2 1 34 34 H 1.09002 * 109.47657 * 300.00174 * 3 2 1 35 35 H 0.96996 * 120.00116 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47183 * 59.99583 * 15 13 4 37 37 H 1.09003 * 109.47404 * 300.00257 * 15 13 4 38 38 H 1.08999 * 109.46938 * 60.00318 * 16 15 13 39 39 H 1.08999 * 109.47401 * 299.99555 * 16 15 13 40 40 H 1.08004 * 126.24298 * 180.14617 * 19 18 17 41 41 H 1.07995 * 120.07405 * 359.97438 * 22 21 20 42 42 H 1.08001 * 119.93264 * 180.27703 * 23 22 21 43 43 H 1.08005 * 119.85532 * 179.74408 * 24 23 22 44 44 H 1.08002 * 119.93281 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.07317 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5744 1.1790 6 1 5.1015 1.0162 1.3395 7 6 3.7147 2.4261 2.1682 8 7 4.0761 2.2475 3.4190 9 14 2.5608 3.8250 1.7201 10 1 1.1554 3.3943 1.9311 11 1 2.8521 5.0013 2.5783 12 1 2.7574 4.1914 0.2945 13 6 4.1784 1.3129 -1.1609 14 8 3.5715 1.1967 -2.2046 15 6 5.6854 1.3134 -1.1616 16 6 6.1947 1.1525 -2.5953 17 6 7.7018 1.1524 -2.5959 18 7 8.4584 0.0981 -2.4722 19 6 9.7441 0.4778 -2.5197 20 6 9.7663 1.8268 -2.6716 21 6 10.9677 2.6829 -2.7683 22 6 10.8339 4.0627 -2.9299 23 6 11.9590 4.8566 -3.0137 24 6 13.2180 4.2865 -2.9488 25 6 13.3576 2.9187 -2.7948 26 6 12.2406 2.1141 -2.7041 27 8 8.4796 2.2367 -2.7179 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9565 -0.8900 35 1 3.7439 2.8423 4.1095 36 1 6.0493 0.4863 -0.5520 37 1 6.0486 2.2551 -0.7501 38 1 5.8309 1.9794 -3.2051 39 1 5.8317 0.2105 -3.0063 40 1 10.6046 -0.1708 -2.4466 41 1 9.8517 4.5084 -2.9852 42 1 11.8570 5.9250 -3.1343 43 1 14.0957 4.9120 -3.0191 44 1 14.3432 2.4798 -2.7453 45 1 12.3509 1.0465 -2.5835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299144946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:56 Heat of formation + Delta-G solvation = -10.448874 kcal Electronic energy + Delta-G solvation = -26748.779071 eV Core-core repulsion = 22925.065681 eV Total energy + Delta-G solvation = -3823.713390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.39975 -40.81712 -39.95421 -37.30643 -35.98775 -35.11345 -34.58435 -33.55494 -32.98184 -31.93367 -29.55855 -27.79724 -27.03962 -25.41832 -24.55802 -23.43843 -22.71681 -22.40327 -21.83082 -20.88551 -18.93916 -18.80033 -18.10915 -17.66990 -17.28656 -17.11697 -16.78080 -16.37103 -15.95900 -15.83940 -15.61507 -15.01906 -14.83392 -14.77404 -14.44167 -14.35881 -14.19874 -14.07141 -13.87283 -13.76485 -13.36265 -13.25692 -13.02796 -12.56719 -12.52894 -12.45438 -12.42810 -12.22068 -12.07935 -12.05119 -11.91023 -11.63652 -11.51972 -11.10937 -10.86115 -10.49996 -9.95980 -9.76503 -9.06153 -8.55573 -6.16527 -0.41368 0.40829 0.85261 1.17154 1.29697 1.41080 1.46688 1.63380 1.84070 2.15362 2.55152 2.85105 2.87822 3.06523 3.51538 3.87532 3.89845 3.95987 3.97960 4.00861 4.10755 4.15076 4.21948 4.25642 4.40379 4.42791 4.46051 4.53453 4.58334 4.64374 4.70029 4.78089 4.86527 4.93572 4.94394 5.00959 5.07356 5.11714 5.20900 5.24163 5.30464 5.45105 5.49153 5.49704 5.52919 5.96118 6.02120 6.22621 6.62153 6.91070 7.36365 7.73349 8.58637 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.002640 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.191597 B =10602.776012 C =11519.650511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.097 3.903 4 N -0.473 5.473 5 C -0.347 4.347 6 H 0.082 0.918 7 C 0.033 3.967 8 N -0.892 5.892 9 Si 0.923 3.077 10 H -0.255 1.255 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.480 3.520 14 O -0.610 6.610 15 C -0.106 4.106 16 C 0.003 3.997 17 C 0.197 3.803 18 N -0.500 5.500 19 C -0.027 4.027 20 C -0.021 4.021 21 C -0.037 4.037 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.110 4.110 25 C -0.115 4.115 26 C -0.100 4.100 27 O -0.206 6.206 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.281 0.719 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.217 0.783 41 H 0.116 0.884 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.161 0.839 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.424 2.698 -10.940 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.026 4.026 4 N -0.193 5.193 5 C -0.474 4.474 6 H 0.099 0.901 7 C -0.172 4.172 8 N -0.528 5.528 9 Si 0.748 3.252 10 H -0.181 1.181 11 H -0.209 1.209 12 H -0.192 1.192 13 C 0.270 3.730 14 O -0.497 6.497 15 C -0.146 4.146 16 C -0.035 4.035 17 C -0.007 4.007 18 N -0.229 5.229 19 C -0.166 4.166 20 C -0.073 4.073 21 C -0.038 4.038 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.118 4.118 27 O -0.093 6.093 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.131 0.869 40 H 0.234 0.766 41 H 0.134 0.866 42 H 0.164 0.836 43 H 0.173 0.827 44 H 0.179 0.821 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.833 2.137 -11.149 17.895 hybrid contribution -0.384 1.281 0.425 1.403 sum 13.449 3.418 -10.724 17.538 Atomic orbital electron populations 1.21675 0.93264 1.02865 1.02084 1.21701 0.97526 0.95826 1.01414 1.21799 0.81515 0.98473 1.00764 1.43872 1.04906 1.64528 1.05982 1.18930 1.10618 1.26328 0.91560 0.90057 1.25851 0.98355 0.98639 0.94323 1.69840 1.45179 1.37351 1.00469 0.86193 0.80033 0.79973 0.79014 1.18100 1.20946 1.19156 1.20606 0.90303 0.79354 0.82718 1.90529 1.71074 1.56177 1.31886 1.21231 0.92325 1.04542 0.96530 1.19795 0.79633 1.06508 0.97578 1.26470 0.96270 0.78583 0.99423 1.70373 1.03094 1.30457 1.18941 1.23826 0.95242 0.92895 1.04658 1.21956 0.82327 0.94769 1.08267 1.17847 0.88719 0.92266 1.04968 1.21423 1.00127 0.92732 0.99767 1.21395 0.92080 1.00975 0.99533 1.21735 0.97984 0.95717 0.97298 1.21481 0.99245 0.93784 0.98724 1.21363 0.89920 1.01620 0.98896 1.84433 1.16982 1.38343 1.69579 0.92607 0.91971 0.90770 0.92608 0.92770 0.91891 0.91539 0.90945 0.89474 0.89255 0.87848 0.86888 0.76622 0.86566 0.83619 0.82653 0.82148 0.83444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.91 71.98 0.71 -3.43 16 2 C -0.13 -4.79 6.21 30.59 0.19 -4.60 16 3 C 0.10 4.21 3.93 86.38 0.34 4.55 16 4 N -0.47 -22.61 2.18 -635.52 -1.39 -24.00 16 5 C -0.35 -18.12 9.05 84.04 0.76 -17.36 16 6 H 0.08 4.54 7.23 -2.91 -0.02 4.52 16 7 C 0.03 1.75 5.26 84.93 0.45 2.19 16 8 N -0.89 -49.20 13.96 21.66 0.30 -48.90 16 9 Si 0.92 41.31 25.06 68.60 1.72 43.03 16 10 H -0.26 -10.65 6.69 99.48 0.67 -9.98 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 C 0.48 21.78 7.58 87.66 0.66 22.45 16 14 O -0.61 -28.80 15.67 -3.06 -0.05 -28.85 16 15 C -0.11 -4.17 4.38 29.85 0.13 -4.04 16 16 C 0.00 0.11 5.13 29.85 0.15 0.26 16 17 C 0.20 6.72 7.58 88.33 0.67 7.39 16 18 N -0.50 -16.88 11.27 -302.86 -3.41 -20.29 16 19 C -0.03 -0.74 11.29 83.77 0.95 0.21 16 20 C -0.02 -0.59 7.07 24.24 0.17 -0.42 16 21 C -0.04 -0.87 5.87 -20.10 -0.12 -0.99 16 22 C -0.12 -2.72 9.73 22.53 0.22 -2.50 16 23 C -0.12 -1.97 10.03 22.23 0.22 -1.75 16 24 C -0.11 -1.36 10.04 22.33 0.22 -1.14 16 25 C -0.11 -1.43 10.03 22.23 0.22 -1.20 16 26 C -0.10 -1.68 9.57 22.53 0.22 -1.46 16 27 O -0.21 -6.85 10.59 -7.79 -0.08 -6.93 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 2.77 3.65 -2.39 -0.01 2.76 16 34 H 0.07 2.83 7.62 -2.39 -0.02 2.81 16 35 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.09 3.52 7.67 -2.39 -0.02 3.50 16 37 H 0.09 3.58 8.10 -2.39 -0.02 3.56 16 38 H 0.10 3.34 8.10 -2.39 -0.02 3.32 16 39 H 0.11 3.77 8.10 -2.39 -0.02 3.75 16 40 H 0.22 4.11 7.30 -2.91 -0.02 4.09 16 41 H 0.12 2.74 7.95 -2.91 -0.02 2.72 16 42 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 43 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 45 H 0.15 1.81 7.04 -2.91 -0.02 1.79 16 Total: -1.00 -65.75 378.27 4.21 -61.54 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.95 Total: 26.26 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 6.17 Total: -1.85 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -4.50 Total: -93.19 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.13 Total: -35.79 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.72 Total: 43.03 kcal Total: -65.75 4.21 -61.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299144946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.088 kcal (2) G-P(sol) polarization free energy of solvation -65.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds