Wall clock time and date at job start Tue Mar 31 2020 16:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99657 * 2 1 4 4 N 1.46902 * 109.46911 * 125.00567 * 3 2 1 5 5 C 1.46851 * 111.00140 * 170.00139 * 4 3 2 6 6 C 1.53041 * 109.52226 * 185.84348 * 5 4 3 7 7 C 1.53115 * 109.27470 * 300.81568 * 6 5 4 8 8 N 1.46504 * 109.52223 * 177.56098 * 7 6 5 9 9 S 1.65600 * 119.99979 * 145.40287 * 8 7 6 10 10 O 1.42101 * 104.27634 * 180.80060 * 9 8 7 11 11 O 1.42101 * 104.27612 * 308.65639 * 9 8 7 12 12 C 1.81405 * 104.44835 * 64.72644 * 9 8 7 13 13 C 1.52999 * 109.46962 * 172.67418 * 12 9 8 14 14 C 1.50702 * 115.54933 * 65.15741 * 13 12 9 15 15 H 1.08003 * 120.00544 * 264.89198 * 14 13 12 16 16 C 1.37877 * 119.99791 * 84.89681 * 14 13 12 17 17 N 1.31516 * 120.00024 * 352.81455 * 16 14 13 18 18 Si 1.86805 * 120.00073 * 172.81276 * 16 14 13 19 19 H 1.48503 * 109.46762 * 60.00160 * 18 16 14 20 20 H 1.48495 * 109.46791 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47101 * 300.00201 * 18 16 14 22 22 C 1.53003 * 117.49903 * 279.48985 * 13 12 9 23 23 C 1.52998 * 117.50023 * 210.83311 * 13 12 9 24 24 C 1.53120 * 109.21157 * 57.62890 * 7 6 5 25 25 C 1.46844 * 111.00103 * 294.21315 * 4 3 2 26 26 H 1.07999 * 119.99990 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99677 * 180.02562 * 1 2 3 28 28 H 1.07991 * 120.00310 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47550 * 5.00677 * 3 2 1 30 30 H 1.09002 * 109.47550 * 245.00552 * 3 2 1 31 31 H 1.08994 * 109.46121 * 65.81991 * 5 4 3 32 32 H 1.09004 * 109.44831 * 305.84620 * 5 4 3 33 33 H 1.08996 * 109.50030 * 180.88119 * 6 5 4 34 34 H 1.08997 * 109.50376 * 60.75628 * 6 5 4 35 35 H 1.09003 * 109.52736 * 297.69096 * 7 6 5 36 36 H 0.97004 * 119.99668 * 325.13050 * 8 7 6 37 37 H 1.08993 * 109.46816 * 292.67367 * 12 9 8 38 38 H 1.08994 * 109.46646 * 52.67842 * 12 9 8 39 39 H 0.97003 * 120.00122 * 185.04655 * 17 16 14 40 40 H 1.09001 * 117.49770 * 0.02562 * 22 13 12 41 41 H 1.09006 * 117.49757 * 145.02191 * 22 13 12 42 42 H 1.09000 * 117.49478 * 214.98324 * 23 13 12 43 43 H 1.08999 * 117.49716 * 359.97360 * 23 13 12 44 44 H 1.08998 * 109.50420 * 62.31638 * 24 7 6 45 45 H 1.09006 * 109.50227 * 182.43604 * 24 7 6 46 46 H 1.09005 * 109.46023 * 294.17673 * 25 4 3 47 47 H 1.08994 * 109.46232 * 54.15034 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.9122 2.4756 1.0358 6 6 4.9585 2.3905 2.1494 7 6 4.2522 2.3942 3.5079 8 7 5.2449 2.2542 4.5762 9 16 5.0192 3.0282 6.0227 10 8 6.1666 2.6839 6.7871 11 8 4.7576 4.3774 5.6612 12 6 3.5336 2.2570 6.7218 13 6 3.3213 2.7616 8.1505 14 6 3.0134 4.2309 8.2819 15 1 3.8088 4.9337 8.4818 16 6 1.7162 4.6782 8.1470 17 7 0.7707 3.8477 7.7650 18 14 1.3017 6.4638 8.5067 19 1 2.0811 7.3451 7.6006 20 1 -0.1497 6.6888 8.2875 21 1 1.6442 6.7770 9.9172 22 6 4.1507 2.1116 9.2599 23 6 2.6548 1.8084 9.1447 24 6 3.2680 1.2227 3.5673 25 6 2.2717 1.3407 2.4116 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3585 2.1317 0.0897 30 1 2.6212 1.4028 -0.9314 31 1 3.3480 3.4025 1.1375 32 1 4.4111 2.4585 0.0667 33 1 5.6286 3.2477 2.0854 34 1 5.5323 1.4702 2.0401 35 1 3.7106 3.3317 3.6344 36 1 6.0324 1.7050 4.4376 37 1 2.6682 2.5170 6.1123 38 1 3.6577 1.1742 6.7336 39 1 -0.1265 4.1773 7.5993 40 1 4.8480 1.3249 8.9717 41 1 4.4734 2.7468 10.0849 42 1 1.9939 2.2443 9.8939 43 1 2.3672 0.8221 8.7807 44 1 3.8145 0.2835 3.4810 45 1 2.7311 1.2461 4.5157 46 1 1.7151 2.2731 2.5070 47 1 1.5791 0.4997 2.4420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333470050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:22 Heat of formation + Delta-G solvation = -30.106824 kcal Electronic energy + Delta-G solvation = -27314.162232 eV Core-core repulsion = 23625.040361 eV Total energy + Delta-G solvation = -3689.121872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.37961 -36.75538 -36.33485 -35.96855 -35.05320 -33.56761 -32.04594 -30.95663 -30.31853 -28.16815 -25.88714 -25.46705 -23.23371 -22.63140 -21.20544 -20.11984 -19.91126 -19.63348 -18.57134 -16.98721 -16.69226 -16.31634 -15.75983 -15.37508 -15.11681 -14.75098 -14.59961 -14.47310 -14.26927 -13.85142 -13.77185 -13.41158 -13.15898 -12.99539 -12.45376 -12.03955 -11.99461 -11.87269 -11.66741 -11.41692 -11.29131 -11.26407 -11.20284 -11.05313 -10.96764 -10.91254 -10.83525 -10.59654 -10.44864 -10.41501 -10.08969 -9.71602 -9.61972 -9.14595 -8.96604 -8.56156 -8.48296 -8.08862 -6.14506 -4.25118 1.10094 2.03396 3.31947 3.33619 3.40621 3.45648 3.80495 4.36793 4.54035 4.62809 4.73179 4.81559 4.88285 5.00908 5.05776 5.14672 5.17206 5.21285 5.27864 5.31775 5.36898 5.44889 5.51485 5.58930 5.68952 5.74019 5.79079 5.85833 5.93755 5.98466 6.05892 6.19909 6.26918 6.36631 6.40103 6.43488 6.47872 6.61748 6.73054 6.93142 6.96583 6.99346 7.23782 7.33255 7.39877 7.79567 8.20365 8.80072 9.46044 10.93026 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.004031 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.583100 B = 6944.229839 C = 7772.315631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.143 4.143 3 C 0.079 3.921 4 N -0.536 5.536 5 C 0.056 3.944 6 C -0.117 4.117 7 C 0.148 3.852 8 N -1.127 6.127 9 S 2.605 3.395 10 O -0.975 6.975 11 O -0.952 6.952 12 C -0.554 4.554 13 C 0.044 3.956 14 C -0.517 4.517 15 H 0.067 0.933 16 C 0.083 3.917 17 N -0.875 5.875 18 Si 0.889 3.111 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.208 4.208 23 C -0.141 4.141 24 C -0.142 4.142 25 C 0.057 3.943 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.409 0.591 37 H 0.133 0.867 38 H 0.100 0.900 39 H 0.263 0.737 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.039 0.961 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -8.017 -15.125 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.161 4.161 3 C -0.048 4.048 4 N -0.261 5.261 5 C -0.073 4.073 6 C -0.156 4.156 7 C 0.040 3.960 8 N -0.882 5.882 9 S 2.702 3.298 10 O -0.966 6.966 11 O -0.942 6.942 12 C -0.687 4.687 13 C 0.041 3.959 14 C -0.554 4.554 15 H 0.085 0.915 16 C -0.122 4.122 17 N -0.510 5.510 18 Si 0.716 3.284 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.245 4.245 23 C -0.180 4.180 24 C -0.181 4.181 25 C -0.071 4.071 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.131 0.869 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.241 0.759 37 H 0.151 0.849 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.057 0.943 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.454 -7.616 -14.774 16.802 hybrid contribution -1.159 0.789 0.020 1.402 sum 1.296 -6.827 -14.754 16.309 Atomic orbital electron populations 1.23890 0.95966 1.01932 1.01289 1.22874 0.95478 0.98596 0.99180 1.21227 0.94320 0.94872 0.94406 1.61960 1.19308 1.42804 1.02036 1.22085 0.94348 0.91608 0.99220 1.21828 0.97787 1.03205 0.92779 1.20812 0.89042 0.98817 0.87356 1.56029 1.32493 1.68651 1.31015 1.05168 0.76882 0.75122 0.72584 1.93502 1.47984 1.84932 1.70138 1.93534 1.86358 1.32950 1.81358 1.30061 1.19117 1.09051 1.10444 1.18266 1.00348 0.94183 0.83073 1.20493 0.93706 0.89526 1.51650 0.91462 1.24936 0.95971 0.97686 0.93597 1.69967 1.02508 1.34563 1.43961 0.86674 0.77265 0.85043 0.79408 1.19475 1.21124 1.19851 1.23192 0.94091 1.03612 1.03626 1.22544 0.93219 0.98504 1.03717 1.22277 0.97545 0.99722 0.98585 1.22075 0.95550 1.01299 0.88216 0.88723 0.88332 0.86861 0.94303 0.90008 0.94318 0.90390 0.90576 0.90497 0.89099 0.75868 0.84864 0.88194 0.92712 0.90693 0.89569 0.89610 0.91546 0.90377 0.90147 0.94286 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 14.32 29.01 0.42 -1.16 16 2 C -0.14 -1.24 8.52 -36.03 -0.31 -1.55 16 3 C 0.08 0.71 5.41 -4.97 -0.03 0.69 16 4 N -0.54 -5.59 4.65 -236.10 -1.10 -6.69 16 5 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 6 C -0.12 -1.28 5.63 -26.65 -0.15 -1.43 16 7 C 0.15 2.01 2.75 -67.81 -0.19 1.82 16 8 N -1.13 -16.68 5.37 -4.78 -0.03 -16.71 16 9 S 2.61 52.59 5.16 -107.50 -0.55 52.04 16 10 O -0.98 -21.55 18.08 -57.54 -1.04 -22.59 16 11 O -0.95 -22.76 17.13 -57.54 -0.99 -23.75 16 12 C -0.55 -11.44 4.86 37.16 0.18 -11.26 16 13 C 0.04 1.06 1.33 -155.66 -0.21 0.85 16 14 C -0.52 -14.09 8.23 -34.44 -0.28 -14.37 16 15 H 0.07 1.88 7.82 -52.48 -0.41 1.47 16 16 C 0.08 2.25 5.39 -17.82 -0.10 2.16 16 17 N -0.87 -23.78 12.96 55.43 0.72 -23.06 16 18 Si 0.89 21.29 29.55 -169.99 -5.02 16.26 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.21 -4.57 9.96 -26.69 -0.27 -4.84 16 23 C -0.14 -3.19 9.47 -26.70 -0.25 -3.44 16 24 C -0.14 -1.78 5.65 -26.65 -0.15 -1.93 16 25 C 0.06 0.66 5.31 -3.83 -0.02 0.64 16 26 H 0.09 0.76 7.84 -52.49 -0.41 0.35 16 27 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.11 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.04 0.36 7.77 -51.93 -0.40 -0.04 16 30 H 0.08 0.64 7.99 -51.93 -0.41 0.23 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.65 8.02 -51.93 -0.42 0.23 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.41 7.49 -51.93 -0.39 1.02 16 36 H 0.41 5.05 8.80 -34.47 -0.30 4.75 16 37 H 0.13 2.84 7.22 -51.93 -0.38 2.46 16 38 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 39 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 42 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.08 1.09 6.06 -51.93 -0.31 0.78 16 46 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.91 7.10 -51.93 -0.37 0.54 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -31.98 388.40 -11.54 -43.52 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -8.01 Total: 8.40 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: -1.37 Total: -33.28 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.40 Total: -46.45 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -2.03 Total: -46.34 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 52.59 SS G_CDS: -0.55 Total: 52.04 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.98 -11.54 -43.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333470050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.416 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds