Wall clock time and date at job start Tue Mar 31 2020 16:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99657 * 2 1 4 4 N 1.46902 * 109.46911 * 125.00567 * 3 2 1 5 5 C 1.46851 * 111.00140 * 170.00139 * 4 3 2 6 6 C 1.53041 * 109.52226 * 185.84348 * 5 4 3 7 7 C 1.53115 * 109.27470 * 300.81568 * 6 5 4 8 8 N 1.46504 * 109.52223 * 177.56098 * 7 6 5 9 9 S 1.65600 * 119.99979 * 145.40287 * 8 7 6 10 10 O 1.42101 * 104.27634 * 180.80060 * 9 8 7 11 11 O 1.42101 * 104.27612 * 308.65639 * 9 8 7 12 12 C 1.81405 * 104.44835 * 64.72644 * 9 8 7 13 13 C 1.52999 * 109.46962 * 172.67418 * 12 9 8 14 14 C 1.50702 * 115.54933 * 65.15741 * 13 12 9 15 15 H 1.08003 * 120.00544 * 264.89198 * 14 13 12 16 16 C 1.37877 * 119.99791 * 84.89681 * 14 13 12 17 17 N 1.31516 * 120.00024 * 352.81455 * 16 14 13 18 18 Si 1.86805 * 120.00073 * 172.81276 * 16 14 13 19 19 H 1.48503 * 109.46762 * 60.00160 * 18 16 14 20 20 H 1.48495 * 109.46791 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47101 * 300.00201 * 18 16 14 22 22 C 1.53003 * 117.49903 * 279.48985 * 13 12 9 23 23 C 1.52998 * 117.50023 * 210.83311 * 13 12 9 24 24 C 1.53120 * 109.21157 * 57.62890 * 7 6 5 25 25 C 1.46844 * 111.00103 * 294.21315 * 4 3 2 26 26 H 1.07999 * 119.99990 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99677 * 180.02562 * 1 2 3 28 28 H 1.07991 * 120.00310 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47550 * 5.00677 * 3 2 1 30 30 H 1.09002 * 109.47550 * 245.00552 * 3 2 1 31 31 H 1.08994 * 109.46121 * 65.81991 * 5 4 3 32 32 H 1.09004 * 109.44831 * 305.84620 * 5 4 3 33 33 H 1.08996 * 109.50030 * 180.88119 * 6 5 4 34 34 H 1.08997 * 109.50376 * 60.75628 * 6 5 4 35 35 H 1.09003 * 109.52736 * 297.69096 * 7 6 5 36 36 H 0.97004 * 119.99668 * 325.13050 * 8 7 6 37 37 H 1.08993 * 109.46816 * 292.67367 * 12 9 8 38 38 H 1.08994 * 109.46646 * 52.67842 * 12 9 8 39 39 H 0.97003 * 120.00122 * 185.04655 * 17 16 14 40 40 H 1.09001 * 117.49770 * 0.02562 * 22 13 12 41 41 H 1.09006 * 117.49757 * 145.02191 * 22 13 12 42 42 H 1.09000 * 117.49478 * 214.98324 * 23 13 12 43 43 H 1.08999 * 117.49716 * 359.97360 * 23 13 12 44 44 H 1.08998 * 109.50420 * 62.31638 * 24 7 6 45 45 H 1.09006 * 109.50227 * 182.43604 * 24 7 6 46 46 H 1.09005 * 109.46023 * 294.17673 * 25 4 3 47 47 H 1.08994 * 109.46232 * 54.15034 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.9122 2.4756 1.0358 6 6 4.9585 2.3905 2.1494 7 6 4.2522 2.3942 3.5079 8 7 5.2449 2.2542 4.5762 9 16 5.0192 3.0282 6.0227 10 8 6.1666 2.6839 6.7871 11 8 4.7576 4.3774 5.6612 12 6 3.5336 2.2570 6.7218 13 6 3.3213 2.7616 8.1505 14 6 3.0134 4.2309 8.2819 15 1 3.8088 4.9337 8.4818 16 6 1.7162 4.6782 8.1470 17 7 0.7707 3.8477 7.7650 18 14 1.3017 6.4638 8.5067 19 1 2.0811 7.3451 7.6006 20 1 -0.1497 6.6888 8.2875 21 1 1.6442 6.7770 9.9172 22 6 4.1507 2.1116 9.2599 23 6 2.6548 1.8084 9.1447 24 6 3.2680 1.2227 3.5673 25 6 2.2717 1.3407 2.4116 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3585 2.1317 0.0897 30 1 2.6212 1.4028 -0.9314 31 1 3.3480 3.4025 1.1375 32 1 4.4111 2.4585 0.0667 33 1 5.6286 3.2477 2.0854 34 1 5.5323 1.4702 2.0401 35 1 3.7106 3.3317 3.6344 36 1 6.0324 1.7050 4.4376 37 1 2.6682 2.5170 6.1123 38 1 3.6577 1.1742 6.7336 39 1 -0.1265 4.1773 7.5993 40 1 4.8480 1.3249 8.9717 41 1 4.4734 2.7468 10.0849 42 1 1.9939 2.2443 9.8939 43 1 2.3672 0.8221 8.7807 44 1 3.8145 0.2835 3.4810 45 1 2.7311 1.2461 4.5157 46 1 1.7151 2.2731 2.5070 47 1 1.5791 0.4997 2.4420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333470050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:20 Heat of formation + Delta-G solvation = -52.380330 kcal Electronic energy + Delta-G solvation = -27315.128084 eV Core-core repulsion = 23625.040361 eV Total energy + Delta-G solvation = -3690.087723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.28576 -38.56934 -37.95893 -37.04063 -36.76575 -34.42185 -34.08878 -31.88583 -31.28899 -29.84495 -27.50227 -26.71662 -24.14478 -23.57304 -22.98393 -21.51690 -21.05659 -20.58173 -20.13342 -18.43409 -18.37027 -17.65013 -16.90196 -16.74884 -16.63596 -16.26620 -15.94729 -15.56830 -15.41127 -15.15534 -14.89843 -14.81911 -14.43630 -13.86271 -13.75740 -13.69173 -13.32430 -13.16094 -13.00934 -12.94723 -12.91051 -12.85843 -12.76625 -12.44984 -12.31437 -12.21811 -12.13718 -12.06935 -11.87597 -11.68584 -11.55956 -11.38977 -10.88882 -10.55612 -10.42260 -10.24718 -9.87030 -9.31542 -8.19972 -6.34603 -0.50465 1.37942 1.38549 1.39572 1.46737 2.01951 2.38734 2.93515 3.00230 3.07267 3.38581 3.45282 3.69814 3.84071 3.92648 4.03408 4.07344 4.22144 4.25750 4.31659 4.37694 4.45197 4.52154 4.55308 4.59490 4.61843 4.70290 4.78748 4.80213 4.88381 4.93385 4.98438 5.01181 5.10462 5.14559 5.19003 5.24805 5.41632 5.48354 5.59496 5.70697 5.75879 5.77519 6.12667 6.15638 6.21838 6.23449 6.71008 7.37566 8.86665 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.004031 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.583100 B = 6944.229839 C = 7772.315631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.150 4.150 3 C 0.078 3.922 4 N -0.535 5.535 5 C 0.055 3.945 6 C -0.112 4.112 7 C 0.141 3.859 8 N -1.107 6.107 9 S 2.620 3.380 10 O -0.996 6.996 11 O -0.997 6.997 12 C -0.549 4.549 13 C 0.011 3.989 14 C -0.537 4.537 15 H 0.047 0.953 16 C 0.045 3.955 17 N -0.890 5.890 18 Si 0.932 3.068 19 H -0.278 1.278 20 H -0.273 1.273 21 H -0.268 1.268 22 C -0.197 4.197 23 C -0.137 4.137 24 C -0.139 4.139 25 C 0.060 3.940 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.033 0.967 30 H 0.097 0.903 31 H 0.029 0.971 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.424 0.576 37 H 0.123 0.877 38 H 0.134 0.866 39 H 0.265 0.735 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.023 0.977 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.300 -9.576 -16.521 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.168 4.168 3 C -0.049 4.049 4 N -0.259 5.259 5 C -0.073 4.073 6 C -0.151 4.151 7 C 0.034 3.966 8 N -0.867 5.867 9 S 2.718 3.282 10 O -0.986 6.986 11 O -0.986 6.986 12 C -0.681 4.681 13 C 0.009 3.991 14 C -0.574 4.574 15 H 0.065 0.935 16 C -0.158 4.158 17 N -0.526 5.526 18 Si 0.757 3.243 19 H -0.204 1.204 20 H -0.198 1.198 21 H -0.193 1.193 22 C -0.234 4.234 23 C -0.176 4.176 24 C -0.178 4.178 25 C -0.069 4.069 26 H 0.111 0.889 27 H 0.127 0.873 28 H 0.135 0.865 29 H 0.051 0.949 30 H 0.115 0.885 31 H 0.047 0.953 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.260 0.740 37 H 0.141 0.859 38 H 0.152 0.848 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.041 0.959 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.804 -9.181 -16.161 18.797 hybrid contribution -1.257 1.251 0.414 1.821 sum 1.547 -7.930 -15.747 17.698 Atomic orbital electron populations 1.24016 0.96009 1.02403 1.00670 1.22900 0.95621 0.98535 0.99738 1.21294 0.94257 0.94944 0.94420 1.61993 1.19420 1.42756 1.01769 1.22144 0.94092 0.91119 0.99963 1.21823 0.97970 1.04190 0.91109 1.20987 0.89143 0.98267 0.88221 1.55486 1.33421 1.68343 1.29409 1.04408 0.76178 0.74471 0.73182 1.93461 1.48636 1.85068 1.71447 1.93479 1.86809 1.36036 1.82306 1.29937 1.18896 1.11120 1.08196 1.18398 1.02335 0.93129 0.85241 1.20675 0.93474 0.91300 1.51953 0.93507 1.25480 0.96011 1.00626 0.93673 1.70009 1.02616 1.35539 1.44399 0.86015 0.77522 0.81551 0.79217 1.20356 1.19780 1.19265 1.23242 0.94147 1.03588 1.02442 1.22500 0.93356 0.98990 1.02722 1.22235 0.97410 0.99758 0.98401 1.22009 0.95384 1.00731 0.88786 0.88876 0.87334 0.86465 0.94851 0.88482 0.95277 0.87989 0.90337 0.88831 0.91632 0.73970 0.85871 0.84757 0.92542 0.88274 0.90066 0.91608 0.89296 0.88792 0.91454 0.95856 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 14.32 67.78 0.97 -1.89 16 2 C -0.15 -2.31 8.52 25.64 0.22 -2.10 16 3 C 0.08 1.26 5.41 85.56 0.46 1.72 16 4 N -0.53 -10.07 4.65 -900.90 -4.19 -14.26 16 5 C 0.06 1.00 5.46 86.33 0.47 1.47 16 6 C -0.11 -2.21 5.63 30.65 0.17 -2.04 16 7 C 0.14 3.70 2.75 45.07 0.12 3.82 16 8 N -1.11 -31.33 5.37 -169.05 -0.91 -32.24 16 9 S 2.62 105.21 5.16 -56.49 -0.29 104.92 16 10 O -1.00 -43.26 18.08 -127.65 -2.31 -45.57 16 11 O -1.00 -48.77 17.13 -127.65 -2.19 -50.96 16 12 C -0.55 -22.32 4.86 71.98 0.35 -21.97 16 13 C 0.01 0.54 1.33 -52.93 -0.07 0.47 16 14 C -0.54 -29.82 8.23 25.60 0.21 -29.61 16 15 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 16 C 0.05 2.48 5.39 84.65 0.46 2.94 16 17 N -0.89 -48.67 12.96 21.45 0.28 -48.39 16 18 Si 0.93 44.03 29.55 68.60 2.03 46.06 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 C -0.20 -8.46 9.96 30.62 0.30 -8.16 16 23 C -0.14 -6.08 9.47 30.62 0.29 -5.79 16 24 C -0.14 -3.28 5.65 30.65 0.17 -3.11 16 25 C 0.06 1.32 5.31 86.33 0.46 1.78 16 26 H 0.09 1.39 7.84 -2.91 -0.02 1.37 16 27 H 0.11 1.37 8.06 -2.91 -0.02 1.35 16 28 H 0.12 1.73 8.06 -2.92 -0.02 1.71 16 29 H 0.03 0.58 7.77 -2.39 -0.02 0.56 16 30 H 0.10 1.27 7.99 -2.39 -0.02 1.25 16 31 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 1.39 8.02 -2.38 -0.02 1.37 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 2.07 7.49 -2.39 -0.02 2.05 16 36 H 0.42 9.53 8.80 -96.74 -0.85 8.68 16 37 H 0.12 5.28 7.22 -2.39 -0.02 5.27 16 38 H 0.13 4.39 8.09 -2.39 -0.02 4.37 16 39 H 0.27 13.84 8.32 -92.71 -0.77 13.07 16 40 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 41 H 0.08 3.52 8.14 -2.38 -0.02 3.50 16 42 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 43 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 44 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.07 1.77 6.06 -2.38 -0.01 1.75 16 46 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 47 H 0.09 1.81 7.10 -2.39 -0.02 1.80 16 Total: -1.00 -68.62 388.40 -2.90 -71.52 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.09 Total: 31.40 kcal Atomic # 6 Polarization: -67.06 SS G_CDS: 4.59 Total: -62.47 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -4.82 Total: -94.89 kcal Atomic # 8 Polarization: -92.04 SS G_CDS: -4.49 Total: -96.53 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 105.21 SS G_CDS: -0.29 Total: 104.92 kcal Total: -68.62 -2.90 -71.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333470050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.138 kcal (2) G-P(sol) polarization free energy of solvation -68.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds