Wall clock time and date at job start Tue Mar 31 2020 15:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47012 * 2 1 4 4 H 1.08998 * 109.47502 * 305.00004 * 3 2 1 5 5 N 1.46501 * 109.47379 * 64.99870 * 3 2 1 6 6 C 1.34772 * 120.00164 * 264.06758 * 5 3 2 7 7 O 1.21587 * 120.00163 * 0.02562 * 6 5 3 8 8 C 1.47643 * 120.00045 * 179.97438 * 6 5 3 9 9 C 1.40015 * 119.89450 * 359.73493 * 8 6 5 10 10 C 1.36319 * 120.10306 * 179.75449 * 9 8 6 11 11 C 1.40884 * 119.89446 * 0.51297 * 10 9 8 12 12 C 1.41109 * 120.10472 * 179.71652 * 11 10 9 13 13 H 1.08002 * 120.00023 * 209.07651 * 12 11 10 14 14 C 1.40225 * 119.99786 * 29.07699 * 12 11 10 15 15 N 1.30647 * 120.00339 * 10.80540 * 14 12 11 16 16 Si 1.86803 * 119.99868 * 190.80541 * 14 12 11 17 17 H 1.48495 * 109.47326 * 89.99887 * 16 14 12 18 18 H 1.48500 * 109.46870 * 210.00196 * 16 14 12 19 19 H 1.48504 * 109.46946 * 329.99715 * 16 14 12 20 20 C 1.40887 * 119.79189 * 359.73979 * 11 10 9 21 21 C 1.36320 * 119.89407 * 359.97438 * 20 11 10 22 22 C 1.50701 * 109.47237 * 184.99666 * 3 2 1 23 23 C 1.41379 * 128.00949 * 288.88894 * 22 3 2 24 24 C 1.50693 * 126.80280 * 0.03171 * 23 22 3 25 25 N 1.30178 * 106.39752 * 179.97438 * 23 22 3 26 26 O 1.20925 * 111.60087 * 359.72693 * 25 23 22 27 27 C 1.34039 * 111.56737 * 0.44576 * 26 25 23 28 28 C 1.50700 * 126.77316 * 179.82893 * 27 26 25 29 29 H 1.08994 * 109.47307 * 299.99942 * 1 2 3 30 30 H 1.09001 * 109.47181 * 60.00083 * 1 2 3 31 31 H 1.09003 * 109.46848 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47124 * 239.99719 * 2 1 3 33 33 H 1.09001 * 109.47181 * 119.99917 * 2 1 3 34 34 H 0.97008 * 119.99407 * 84.06603 * 5 3 2 35 35 H 1.08000 * 119.94654 * 0.02562 * 9 8 6 36 36 H 1.08006 * 120.04911 * 180.22377 * 10 9 8 37 37 H 0.97001 * 120.00312 * 179.97438 * 15 14 12 38 38 H 1.08001 * 120.05688 * 179.97438 * 20 11 10 39 39 H 1.07999 * 119.95119 * 179.97438 * 21 20 11 40 40 H 1.09000 * 109.47646 * 95.27435 * 24 23 22 41 41 H 1.09004 * 109.47376 * 215.27694 * 24 23 22 42 42 H 1.09007 * 109.46892 * 335.27528 * 24 23 22 43 43 H 1.09006 * 109.47281 * 269.68636 * 28 27 26 44 44 H 1.08997 * 109.47647 * 29.68564 * 28 27 26 45 45 H 1.09004 * 109.46936 * 149.68986 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.5361 2.8510 1.3005 7 8 -0.1496 2.9869 0.3057 8 6 0.1452 3.5107 2.5622 9 6 0.9329 3.3474 3.7082 10 6 0.5787 3.9586 4.8741 11 6 -0.5878 4.7468 4.9275 12 6 -0.9619 5.3766 6.1336 13 1 -2.0041 5.5681 6.3421 14 6 0.0197 5.7537 7.0613 15 7 1.2822 5.7187 6.7272 16 14 -0.4780 6.3062 8.7750 17 1 -0.5274 5.1297 9.6796 18 1 0.5153 7.2837 9.2878 19 1 -1.8177 6.9447 8.7196 20 6 -1.3800 4.9038 3.7731 21 6 -1.0147 4.2935 2.6102 22 6 3.5419 1.4443 -0.1237 23 6 4.4957 1.0543 0.8442 24 6 4.2146 0.5426 2.2335 25 7 5.6648 1.2236 0.2972 26 8 5.5709 1.6428 -0.8331 27 6 4.2905 1.8194 -1.1884 28 6 3.7839 2.3288 -2.5131 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.1993 1.9888 2.0456 35 1 1.8248 2.7398 3.6673 36 1 1.1889 3.8350 5.7567 37 1 1.9612 5.9800 7.3688 38 1 -2.2754 5.5067 3.8093 39 1 -1.6215 4.4129 1.7248 40 1 4.2117 -0.5473 2.2257 41 1 4.9870 0.8990 2.9152 42 1 3.2418 0.9062 2.5647 43 1 3.6901 3.4141 -2.4734 44 1 4.4853 2.0534 -3.3007 45 1 2.8097 1.8874 -2.7235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340297307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:50 Heat of formation + Delta-G solvation = 24.819804 kcal Electronic energy + Delta-G solvation = -27800.916794 eV Core-core repulsion = 23978.732768 eV Total energy + Delta-G solvation = -3822.184026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.00688 -39.50534 -37.47429 -36.30338 -34.09053 -33.85456 -33.34755 -32.12201 -30.07914 -29.49063 -28.93296 -28.24033 -26.61097 -25.48516 -22.49728 -22.19408 -21.14647 -20.56723 -20.41744 -19.56831 -17.71979 -17.56092 -17.28725 -16.62541 -15.87651 -15.39123 -14.91783 -14.37966 -14.15348 -14.08750 -13.99862 -13.55242 -13.35583 -13.30989 -13.20287 -13.12416 -12.87839 -12.76898 -12.51347 -12.28959 -12.06587 -11.90874 -11.63848 -11.49423 -11.33266 -11.29957 -11.00658 -10.96994 -10.72119 -10.65828 -10.03086 -9.92659 -9.57212 -9.46031 -9.30581 -8.97368 -8.70713 -7.76396 -7.53188 -6.99725 -4.64520 1.35282 2.07250 2.17987 2.91174 2.94566 2.97651 2.98918 2.99798 3.65780 3.73735 3.83427 4.12648 4.34692 4.54874 4.68201 4.80908 5.08979 5.12587 5.16646 5.24200 5.30619 5.35768 5.51554 5.52281 5.53049 5.65174 5.68305 5.81645 5.90558 5.96623 5.97965 6.03103 6.07214 6.27154 6.28882 6.51068 6.73363 6.81808 6.87790 7.01030 7.09606 7.40951 7.59872 7.74114 7.83121 8.04818 8.15345 8.19793 8.38036 8.61325 8.71509 8.99904 9.91953 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.003059 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.117831 B = 9150.276516 C =10068.827888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.224 3.776 4 H 0.103 0.897 5 N -0.735 5.735 6 C 0.575 3.425 7 O -0.570 6.570 8 C -0.280 4.280 9 C -0.066 4.066 10 C -0.170 4.170 11 C 0.130 3.870 12 C -0.445 4.445 13 H 0.084 0.916 14 C 0.072 3.928 15 N -0.781 5.781 16 Si 0.916 3.084 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.235 4.235 21 C -0.024 4.024 22 C -0.207 4.207 23 C 0.031 3.969 24 C -0.082 4.082 25 N -0.367 5.367 26 O 0.096 5.904 27 C -0.020 4.020 28 C -0.076 4.076 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.395 0.605 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.286 0.714 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.330 -8.729 -9.581 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.118 3.882 4 H 0.121 0.879 5 N -0.390 5.390 6 C 0.370 3.630 7 O -0.451 6.451 8 C -0.285 4.285 9 C -0.085 4.085 10 C -0.190 4.190 11 C 0.126 3.874 12 C -0.473 4.473 13 H 0.102 0.898 14 C -0.148 4.148 15 N -0.405 5.405 16 Si 0.740 3.260 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.254 4.254 21 C -0.043 4.043 22 C -0.212 4.212 23 C -0.128 4.128 24 C -0.139 4.139 25 N -0.073 5.073 26 O 0.031 5.969 27 C -0.084 4.084 28 C -0.133 4.133 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.234 0.766 35 H 0.104 0.896 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.349 -8.753 -9.772 14.575 hybrid contribution -0.403 0.329 1.195 1.304 sum 5.946 -8.424 -8.577 13.412 Atomic orbital electron populations 1.21705 0.94479 1.00774 1.03268 1.21908 0.97128 0.95453 1.02058 1.18999 0.85321 0.93940 0.89954 0.87864 1.46148 1.27911 1.52655 1.12258 1.18564 0.78997 0.76542 0.88864 1.90627 1.53307 1.63983 1.37208 1.18916 1.02875 1.13766 0.92896 1.20477 0.96526 0.98162 0.93369 1.21027 1.00482 1.00131 0.97315 1.17806 0.90473 0.87324 0.91757 1.19840 0.94897 1.32099 1.00497 0.89791 1.26071 0.94402 0.93616 1.00701 1.69708 1.01355 1.33443 1.35960 0.86166 0.79822 0.79247 0.80760 1.19020 1.20020 1.18341 1.20778 1.03797 1.07712 0.93125 1.20364 0.93828 0.93284 0.96802 1.21193 0.97896 1.08003 0.94099 1.23391 0.88282 1.01765 0.99383 1.20320 1.03144 1.01608 0.88868 1.73819 1.23054 1.16913 0.93536 1.84796 1.26859 1.61665 1.23533 1.24234 0.83540 1.01461 0.99156 1.20390 1.01759 1.02300 0.88880 0.92037 0.92269 0.93293 0.91543 0.91792 0.76632 0.89628 0.86005 0.90328 0.88319 0.88012 0.89846 0.89957 0.90104 0.89125 0.89760 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.94 37.16 0.33 -1.59 16 2 C -0.13 -1.52 5.59 -26.73 -0.15 -1.66 16 3 C 0.22 3.05 2.56 -69.08 -0.18 2.88 16 4 H 0.10 1.50 6.45 -51.93 -0.34 1.17 16 5 N -0.73 -11.82 4.66 -55.94 -0.26 -12.08 16 6 C 0.58 11.45 6.44 -12.42 -0.08 11.37 16 7 O -0.57 -12.30 14.86 5.29 0.08 -12.22 16 8 C -0.28 -6.16 5.89 -104.73 -0.62 -6.78 16 9 C -0.07 -1.43 9.47 -39.61 -0.38 -1.81 16 10 C -0.17 -4.09 8.59 -39.27 -0.34 -4.43 16 11 C 0.13 3.24 5.55 -106.81 -0.59 2.65 16 12 C -0.45 -10.95 9.05 -37.75 -0.34 -11.29 16 13 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 14 C 0.07 1.67 5.25 -17.31 -0.09 1.58 16 15 N -0.78 -18.66 10.85 55.56 0.60 -18.06 16 16 Si 0.92 17.27 29.57 -169.99 -5.03 12.24 16 17 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 18 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 20 C -0.23 -5.55 9.73 -39.27 -0.38 -5.93 16 21 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 22 C -0.21 -2.69 5.19 -104.42 -0.54 -3.24 16 23 C 0.03 0.41 7.21 -82.10 -0.59 -0.18 16 24 C -0.08 -0.90 10.22 36.00 0.37 -0.54 16 25 N -0.37 -5.29 12.07 33.42 0.40 -4.89 16 26 O 0.10 1.26 11.20 17.18 0.19 1.46 16 27 C -0.02 -0.23 7.49 -35.30 -0.26 -0.50 16 28 C -0.08 -0.60 10.12 36.01 0.36 -0.24 16 29 H 0.06 0.98 6.53 -51.93 -0.34 0.64 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.40 6.00 3.58 -40.82 -0.15 5.85 16 35 H 0.09 1.58 6.37 -52.49 -0.33 1.25 16 36 H 0.12 2.98 6.23 -52.48 -0.33 2.66 16 37 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 38 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.10 2.23 7.63 -52.49 -0.40 1.83 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.90 5.22 -51.93 -0.27 0.63 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.67 7.60 -51.93 -0.39 0.27 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -28.41 370.27 -8.18 -36.59 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -5.90 Total: 11.99 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -3.85 Total: -20.60 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.75 Total: -35.03 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.27 Total: -10.76 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.41 -8.18 -36.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340297307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.407 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds