Wall clock time and date at job start Tue Mar 31 2020 15:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47012 * 2 1 4 4 H 1.08998 * 109.47502 * 305.00004 * 3 2 1 5 5 N 1.46501 * 109.47379 * 64.99870 * 3 2 1 6 6 C 1.34772 * 120.00164 * 264.06758 * 5 3 2 7 7 O 1.21587 * 120.00163 * 0.02562 * 6 5 3 8 8 C 1.47643 * 120.00045 * 179.97438 * 6 5 3 9 9 C 1.40015 * 119.89450 * 359.73493 * 8 6 5 10 10 C 1.36319 * 120.10306 * 179.75449 * 9 8 6 11 11 C 1.40884 * 119.89446 * 0.51297 * 10 9 8 12 12 C 1.41109 * 120.10472 * 179.71652 * 11 10 9 13 13 H 1.08002 * 120.00023 * 209.07651 * 12 11 10 14 14 C 1.40225 * 119.99786 * 29.07699 * 12 11 10 15 15 N 1.30647 * 120.00339 * 10.80540 * 14 12 11 16 16 Si 1.86803 * 119.99868 * 190.80541 * 14 12 11 17 17 H 1.48495 * 109.47326 * 89.99887 * 16 14 12 18 18 H 1.48500 * 109.46870 * 210.00196 * 16 14 12 19 19 H 1.48504 * 109.46946 * 329.99715 * 16 14 12 20 20 C 1.40887 * 119.79189 * 359.73979 * 11 10 9 21 21 C 1.36320 * 119.89407 * 359.97438 * 20 11 10 22 22 C 1.50701 * 109.47237 * 184.99666 * 3 2 1 23 23 C 1.41379 * 128.00949 * 288.88894 * 22 3 2 24 24 C 1.50693 * 126.80280 * 0.03171 * 23 22 3 25 25 N 1.30178 * 106.39752 * 179.97438 * 23 22 3 26 26 O 1.20925 * 111.60087 * 359.72693 * 25 23 22 27 27 C 1.34039 * 111.56737 * 0.44576 * 26 25 23 28 28 C 1.50700 * 126.77316 * 179.82893 * 27 26 25 29 29 H 1.08994 * 109.47307 * 299.99942 * 1 2 3 30 30 H 1.09001 * 109.47181 * 60.00083 * 1 2 3 31 31 H 1.09003 * 109.46848 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47124 * 239.99719 * 2 1 3 33 33 H 1.09001 * 109.47181 * 119.99917 * 2 1 3 34 34 H 0.97008 * 119.99407 * 84.06603 * 5 3 2 35 35 H 1.08000 * 119.94654 * 0.02562 * 9 8 6 36 36 H 1.08006 * 120.04911 * 180.22377 * 10 9 8 37 37 H 0.97001 * 120.00312 * 179.97438 * 15 14 12 38 38 H 1.08001 * 120.05688 * 179.97438 * 20 11 10 39 39 H 1.07999 * 119.95119 * 179.97438 * 21 20 11 40 40 H 1.09000 * 109.47646 * 95.27435 * 24 23 22 41 41 H 1.09004 * 109.47376 * 215.27694 * 24 23 22 42 42 H 1.09007 * 109.46892 * 335.27528 * 24 23 22 43 43 H 1.09006 * 109.47281 * 269.68636 * 28 27 26 44 44 H 1.08997 * 109.47647 * 29.68564 * 28 27 26 45 45 H 1.09004 * 109.46936 * 149.68986 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.5361 2.8510 1.3005 7 8 -0.1496 2.9869 0.3057 8 6 0.1452 3.5107 2.5622 9 6 0.9329 3.3474 3.7082 10 6 0.5787 3.9586 4.8741 11 6 -0.5878 4.7468 4.9275 12 6 -0.9619 5.3766 6.1336 13 1 -2.0041 5.5681 6.3421 14 6 0.0197 5.7537 7.0613 15 7 1.2822 5.7187 6.7272 16 14 -0.4780 6.3062 8.7750 17 1 -0.5274 5.1297 9.6796 18 1 0.5153 7.2837 9.2878 19 1 -1.8177 6.9447 8.7196 20 6 -1.3800 4.9038 3.7731 21 6 -1.0147 4.2935 2.6102 22 6 3.5419 1.4443 -0.1237 23 6 4.4957 1.0543 0.8442 24 6 4.2146 0.5426 2.2335 25 7 5.6648 1.2236 0.2972 26 8 5.5709 1.6428 -0.8331 27 6 4.2905 1.8194 -1.1884 28 6 3.7839 2.3288 -2.5131 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.1993 1.9888 2.0456 35 1 1.8248 2.7398 3.6673 36 1 1.1889 3.8350 5.7567 37 1 1.9612 5.9800 7.3688 38 1 -2.2754 5.5067 3.8093 39 1 -1.6215 4.4129 1.7248 40 1 4.2117 -0.5473 2.2257 41 1 4.9870 0.8990 2.9152 42 1 3.2418 0.9062 2.5647 43 1 3.6901 3.4141 -2.4734 44 1 4.4853 2.0534 -3.3007 45 1 2.8097 1.8874 -2.7235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340297307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:48 Heat of formation + Delta-G solvation = 10.905111 kcal Electronic energy + Delta-G solvation = -27801.520180 eV Core-core repulsion = 23978.732768 eV Total energy + Delta-G solvation = -3822.787412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.00028 -41.00990 -39.12756 -37.63977 -35.63209 -35.08922 -34.35660 -33.39308 -31.75528 -31.29710 -29.86238 -29.17961 -27.95223 -26.91445 -23.83501 -23.48321 -22.85071 -21.85008 -21.55023 -20.92807 -19.35304 -18.72745 -18.61966 -17.90611 -17.31994 -16.85448 -16.21392 -15.76671 -15.66287 -15.41301 -15.12500 -14.81241 -14.57684 -14.43307 -14.31882 -14.22750 -14.03012 -13.90344 -13.79787 -13.58742 -13.32407 -13.30982 -13.13870 -12.85822 -12.64020 -12.58698 -12.38525 -12.34508 -12.02032 -11.77630 -11.70671 -11.36132 -11.17680 -10.92223 -10.67847 -10.22759 -10.03745 -9.57585 -9.35470 -8.73403 -6.49650 0.39680 0.44601 1.07216 1.14195 1.39605 1.43007 1.53089 2.09134 2.15506 2.19665 2.36701 2.81467 3.14242 3.45384 3.67649 3.69438 3.82440 4.06841 4.21563 4.24453 4.26337 4.31816 4.45554 4.48414 4.55536 4.62363 4.64362 4.68298 4.77025 4.85242 4.92141 4.93277 5.02500 5.04358 5.05046 5.14353 5.15862 5.24199 5.30222 5.43678 5.58441 5.62378 5.81615 5.94031 6.00073 6.24101 6.55376 6.66240 6.79114 6.88840 7.23222 7.44106 8.21018 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.003059 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.117831 B = 9150.276516 C =10068.827888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C 0.228 3.772 4 H 0.096 0.904 5 N -0.721 5.721 6 C 0.579 3.421 7 O -0.588 6.588 8 C -0.286 4.286 9 C -0.059 4.059 10 C -0.189 4.189 11 C 0.103 3.897 12 C -0.478 4.478 13 H 0.084 0.916 14 C 0.036 3.964 15 N -0.809 5.809 16 Si 0.988 3.012 17 H -0.259 1.259 18 H -0.267 1.267 19 H -0.258 1.258 20 C -0.247 4.247 21 C -0.033 4.033 22 C -0.227 4.227 23 C 0.027 3.973 24 C -0.083 4.083 25 N -0.392 5.392 26 O 0.088 5.912 27 C -0.007 4.007 28 C -0.078 4.078 29 H 0.030 0.970 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.400 0.600 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.294 0.706 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.095 -9.666 -10.050 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C 0.123 3.877 4 H 0.114 0.886 5 N -0.376 5.376 6 C 0.372 3.628 7 O -0.471 6.471 8 C -0.290 4.290 9 C -0.078 4.078 10 C -0.209 4.209 11 C 0.099 3.901 12 C -0.506 4.506 13 H 0.102 0.898 14 C -0.182 4.182 15 N -0.434 5.434 16 Si 0.808 3.192 17 H -0.183 1.183 18 H -0.192 1.192 19 H -0.182 1.182 20 C -0.267 4.267 21 C -0.052 4.052 22 C -0.232 4.232 23 C -0.132 4.132 24 C -0.141 4.141 25 N -0.101 5.101 26 O 0.026 5.974 27 C -0.071 4.071 28 C -0.135 4.135 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.240 0.760 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.142 -9.710 -10.272 15.836 hybrid contribution -0.597 0.570 1.181 1.441 sum 6.544 -9.140 -9.090 14.457 Atomic orbital electron populations 1.21659 0.95454 1.01469 1.01294 1.21883 0.96036 0.94388 1.03606 1.19082 0.85870 0.94623 0.88168 0.88590 1.46043 1.26492 1.51420 1.13611 1.18236 0.79896 0.76882 0.87747 1.90616 1.54196 1.64796 1.37476 1.19253 1.02452 1.13213 0.94102 1.20711 0.97189 0.97526 0.92376 1.21039 1.00704 1.01189 0.97935 1.18142 0.91326 0.88078 0.92505 1.20087 0.95455 1.33551 1.01518 0.89785 1.26881 0.94061 0.93110 1.04125 1.69744 1.02327 1.33870 1.37453 0.85095 0.79448 0.78960 0.75660 1.18322 1.19184 1.18178 1.20923 1.04192 1.08294 0.93282 1.20523 0.94449 0.93530 0.96717 1.21125 0.97346 1.09836 0.94886 1.23754 0.88120 1.01198 1.00177 1.20416 1.02976 1.02871 0.87828 1.73815 1.23750 1.18303 0.94202 1.84775 1.27555 1.61738 1.23292 1.24872 0.82811 0.99410 1.00051 1.20619 1.02781 1.02489 0.87634 0.95060 0.93101 0.91308 0.89207 0.90980 0.76025 0.86568 0.86892 0.89498 0.87720 0.87459 0.87900 0.89659 0.90313 0.88621 0.87279 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.94 71.98 0.64 -2.88 16 2 C -0.12 -2.59 5.59 30.59 0.17 -2.42 16 3 C 0.23 5.79 2.56 44.24 0.11 5.90 16 4 H 0.10 2.63 6.45 -2.39 -0.02 2.61 16 5 N -0.72 -22.27 4.66 -449.18 -2.10 -24.36 16 6 C 0.58 22.69 6.44 86.73 0.56 23.24 16 7 O -0.59 -25.11 14.86 -3.99 -0.06 -25.17 16 8 C -0.29 -12.57 5.89 -19.93 -0.12 -12.69 16 9 C -0.06 -2.55 9.47 22.25 0.21 -2.34 16 10 C -0.19 -9.27 8.59 22.47 0.19 -9.08 16 11 C 0.10 5.27 5.55 -21.28 -0.12 5.15 16 12 C -0.48 -24.09 9.05 23.46 0.21 -23.88 16 13 H 0.08 4.06 7.87 -2.91 -0.02 4.04 16 14 C 0.04 1.66 5.25 85.35 0.45 2.11 16 15 N -0.81 -39.08 10.85 21.87 0.24 -38.84 16 16 Si 0.99 35.17 29.57 68.60 2.03 37.20 16 17 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 18 H -0.27 -9.09 7.11 99.48 0.71 -8.39 16 19 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 20 C -0.25 -12.02 9.73 22.47 0.22 -11.80 16 21 C -0.03 -1.53 9.52 22.25 0.21 -1.32 16 22 C -0.23 -5.47 5.19 -19.74 -0.10 -5.57 16 23 C 0.03 0.67 7.21 43.57 0.31 0.98 16 24 C -0.08 -1.69 10.22 71.23 0.73 -0.96 16 25 N -0.39 -10.80 12.07 -49.56 -0.60 -11.40 16 26 O 0.09 2.20 11.20 71.64 0.80 3.00 16 27 C -0.01 -0.15 7.49 25.04 0.19 0.03 16 28 C -0.08 -1.03 10.12 71.24 0.72 -0.31 16 29 H 0.03 0.96 6.53 -2.39 -0.02 0.94 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.46 8.07 -2.39 -0.02 1.44 16 34 H 0.40 11.53 3.58 -92.70 -0.33 11.19 16 35 H 0.12 4.16 6.37 -2.91 -0.02 4.15 16 36 H 0.11 5.67 6.23 -2.91 -0.02 5.65 16 37 H 0.29 12.72 8.29 -92.71 -0.77 11.96 16 38 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 39 H 0.11 4.76 7.63 -2.91 -0.02 4.74 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.08 1.60 5.22 -2.38 -0.01 1.59 16 43 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.10 1.19 7.60 -2.39 -0.02 1.17 16 Total: -1.00 -61.98 370.27 5.61 -56.38 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: 0.70 Total: 39.01 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 4.59 Total: -35.81 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -2.46 Total: -74.60 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.74 Total: -22.17 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 2.03 Total: 37.20 kcal Total: -61.98 5.61 -56.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340297307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.283 kcal (2) G-P(sol) polarization free energy of solvation -61.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds