Wall clock time and date at job start Tue Mar 31 2020 16:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 N 1.46493 * 109.46732 * 180.02562 * 3 2 1 5 5 C 1.37104 * 120.00163 * 273.58078 * 4 3 2 6 6 H 1.07997 * 119.99617 * 55.55808 * 5 4 3 7 7 C 1.38944 * 120.00423 * 235.55920 * 5 4 3 8 8 N 1.31419 * 119.99744 * 20.87089 * 7 5 4 9 9 Si 1.86801 * 120.00300 * 200.86825 * 7 5 4 10 10 H 1.48492 * 109.46987 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47004 * 119.99899 * 9 7 5 12 12 H 1.48494 * 109.47260 * 239.99883 * 9 7 5 13 13 C 1.34783 * 119.99972 * 93.58834 * 4 3 2 14 14 O 1.21285 * 119.99944 * 356.30484 * 13 4 3 15 15 C 1.50699 * 119.99544 * 176.58031 * 13 4 3 16 16 H 1.08996 * 109.47299 * 315.08773 * 15 13 4 17 17 C 1.53002 * 109.47516 * 75.09368 * 15 13 4 18 18 N 1.46501 * 109.46874 * 195.09170 * 15 13 4 19 19 C 1.36542 * 118.85929 * 300.00018 * 18 15 13 20 20 C 1.34290 * 122.41084 * 179.97438 * 19 18 15 21 21 C 1.46375 * 119.41757 * 0.02562 * 20 19 18 22 22 C 1.39583 * 122.03979 * 179.97438 * 21 20 19 23 23 C 1.36715 * 119.49150 * 180.02562 * 22 21 20 24 24 C 1.38904 * 120.88955 * 359.97438 * 23 22 21 25 25 C 1.36749 * 120.88669 * 0.02562 * 24 23 22 26 26 C 1.39470 * 119.50574 * 0.02562 * 25 24 23 27 27 C 1.34781 * 118.86882 * 119.73226 * 18 15 13 28 28 O 1.21790 * 120.38117 * 359.97396 * 27 18 15 29 29 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47326 * 299.99705 * 1 2 3 31 31 H 1.08998 * 109.47142 * 59.99773 * 1 2 3 32 32 H 1.08996 * 109.46664 * 240.00251 * 2 1 3 33 33 H 1.08998 * 109.47142 * 120.00227 * 2 1 3 34 34 H 1.09003 * 109.46757 * 59.99946 * 3 2 1 35 35 H 1.08998 * 109.47275 * 300.00145 * 3 2 1 36 36 H 0.96999 * 119.99933 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47323 * 183.13415 * 17 15 13 38 38 H 1.08999 * 109.46490 * 303.13119 * 17 15 13 39 39 H 1.08997 * 109.46938 * 63.13150 * 17 15 13 40 40 H 1.07994 * 118.79583 * 359.97438 * 19 18 15 41 41 H 1.08002 * 120.29537 * 179.97438 * 20 19 18 42 42 H 1.08005 * 120.25026 * 0.02562 * 22 21 20 43 43 H 1.07999 * 119.55666 * 180.02562 * 23 22 21 44 44 H 1.07998 * 119.55852 * 180.02562 * 24 23 22 45 45 H 1.08003 * 120.24803 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.1910 1.3680 1.1841 6 1 4.0031 0.5524 1.8665 7 6 5.1279 2.3420 1.5068 8 7 5.0811 3.5180 0.9222 9 14 6.4541 1.9798 2.7715 10 1 6.2896 0.5936 3.2781 11 1 7.7912 2.1204 2.1409 12 1 6.3362 2.9372 3.9005 13 6 4.1784 1.5156 -1.1659 14 8 3.5734 1.5139 -2.2170 15 6 5.6834 1.5932 -1.1627 16 1 6.0085 2.3121 -0.4107 17 6 6.2645 0.2160 -0.8365 18 7 6.1530 2.0213 -2.4827 19 6 5.8504 1.2538 -3.5707 20 6 6.2439 1.5789 -4.8128 21 6 7.0270 2.7975 -5.0230 22 6 7.4647 3.1871 -6.2899 23 6 8.1937 4.3356 -6.4264 24 6 8.5035 5.1191 -5.3220 25 6 8.0880 4.7619 -4.0691 26 6 7.3435 3.5948 -3.8990 27 6 6.8642 3.1619 -2.5820 28 8 7.1098 3.8230 -1.5891 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 5.7354 4.1979 1.1471 37 1 7.3508 0.2842 -0.7794 38 1 5.8712 -0.1269 0.1204 39 1 5.9855 -0.4905 -1.6183 40 1 5.2734 0.3522 -3.4270 41 1 5.9856 0.9463 -5.6492 42 1 7.2292 2.5858 -7.1557 43 1 8.5325 4.6383 -7.4062 44 1 9.0804 6.0224 -5.4546 45 1 8.3351 5.3785 -3.2175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346210035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:03 Heat of formation + Delta-G solvation = -22.280649 kcal Electronic energy + Delta-G solvation = -29062.990539 eV Core-core repulsion = 25238.764084 eV Total energy + Delta-G solvation = -3824.226454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.88345 -39.00514 -37.83822 -36.33576 -34.99179 -33.87497 -32.67558 -31.19855 -31.14820 -29.84026 -28.79249 -26.02498 -24.99558 -24.14588 -23.44705 -22.41386 -21.34197 -20.83607 -19.58945 -18.13342 -17.47336 -17.04475 -16.40681 -15.37029 -15.27663 -14.87603 -14.82712 -14.75172 -14.43327 -14.14184 -14.03987 -13.73329 -13.59092 -13.19799 -12.72491 -12.65321 -12.49759 -12.35142 -12.03225 -11.91905 -11.62159 -11.49095 -11.42171 -11.30898 -11.19417 -11.05676 -10.89198 -10.84408 -10.65889 -10.53217 -10.37350 -9.96857 -9.46678 -9.28320 -8.91039 -8.82678 -8.37169 -7.43970 -7.19078 -6.50056 -4.37421 1.07958 1.24529 2.60900 3.06640 3.14062 3.18960 3.22414 3.33710 3.85787 4.02287 4.34161 4.70143 4.77560 4.83411 4.94635 5.02765 5.09019 5.43063 5.49485 5.54221 5.56949 5.59310 5.74845 5.75651 5.86711 5.93537 6.05406 6.11644 6.15497 6.18544 6.19340 6.32827 6.40663 6.43098 6.51026 6.57013 6.60592 6.70625 6.72671 6.81108 6.83923 6.96403 7.00090 7.15245 7.35067 7.78314 7.87817 8.48119 8.50113 8.79177 9.37634 9.82618 10.51789 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.004722 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.601998 B = 5928.376120 C = 7276.892940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.116 3.884 4 N -0.440 5.440 5 C -0.362 4.362 6 H 0.087 0.913 7 C 0.050 3.950 8 N -0.831 5.831 9 Si 0.896 3.104 10 H -0.263 1.263 11 H -0.271 1.271 12 H -0.277 1.277 13 C 0.505 3.495 14 O -0.603 6.603 15 C 0.088 3.912 16 H 0.171 0.829 17 C -0.151 4.151 18 N -0.497 5.497 19 C 0.176 3.824 20 C -0.254 4.254 21 C 0.023 3.977 22 C -0.137 4.137 23 C -0.088 4.088 24 C -0.156 4.156 25 C -0.045 4.045 26 C -0.159 4.159 27 C 0.540 3.460 28 O -0.510 6.510 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.280 0.720 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.153 0.847 41 H 0.140 0.860 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -3.819 -8.393 9.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.008 4.008 4 N -0.159 5.159 5 C -0.490 4.490 6 H 0.105 0.895 7 C -0.159 4.159 8 N -0.464 5.464 9 Si 0.721 3.279 10 H -0.186 1.186 11 H -0.197 1.197 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.488 6.488 15 C -0.017 4.017 16 H 0.187 0.813 17 C -0.209 4.209 18 N -0.210 5.210 19 C 0.052 3.948 20 C -0.277 4.277 21 C 0.022 3.978 22 C -0.155 4.155 23 C -0.106 4.106 24 C -0.174 4.174 25 C -0.063 4.063 26 C -0.162 4.162 27 C 0.334 3.666 28 O -0.387 6.387 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.170 0.830 41 H 0.158 0.842 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.472 -3.200 -8.178 9.443 hybrid contribution 0.479 0.069 0.616 0.784 sum 3.952 -3.131 -7.561 9.088 Atomic orbital electron populations 1.21689 0.96440 1.00775 1.01441 1.21809 0.94763 0.98775 1.01735 1.21432 0.83122 0.95021 1.01204 1.43139 1.03260 1.64594 1.04907 1.19260 1.21434 1.09583 0.98723 0.89539 1.25675 0.99417 0.93825 0.97004 1.69935 1.33403 1.02204 1.40898 0.86353 0.81486 0.79290 0.80777 1.18649 1.19651 1.20228 1.20220 0.88650 0.77926 0.83856 1.90521 1.70104 1.56470 1.31726 1.22082 0.94082 1.01023 0.84463 0.81266 1.22043 1.00485 0.94614 1.03797 1.45102 1.45902 1.21194 1.08814 1.21434 0.91990 0.95117 0.86212 1.21185 1.10171 1.00240 0.96145 1.19152 0.93140 0.93045 0.92507 1.20786 1.00665 0.97962 0.96120 1.20943 0.96702 0.94383 0.98586 1.20769 1.03275 1.00968 0.92425 1.20796 0.93651 0.94075 0.97822 1.19935 1.05063 0.98629 0.92579 1.18152 0.78855 0.80218 0.89362 1.90881 1.56744 1.52926 1.38171 0.93368 0.92981 0.93039 0.92455 0.92112 0.91643 0.92168 0.90883 0.92584 0.88534 0.92971 0.82959 0.84211 0.85508 0.86110 0.85952 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.13 -2.35 6.25 -26.73 -0.17 -2.52 16 3 C 0.12 2.48 5.40 -4.04 -0.02 2.46 16 4 N -0.44 -10.61 2.39 -114.82 -0.27 -10.88 16 5 C -0.36 -8.72 7.28 -14.93 -0.11 -8.83 16 6 H 0.09 2.00 7.91 -52.49 -0.42 1.59 16 7 C 0.05 1.23 3.35 -17.47 -0.06 1.17 16 8 N -0.83 -22.35 11.69 55.50 0.65 -21.70 16 9 Si 0.90 19.08 29.60 -169.99 -5.03 14.05 16 10 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 11 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.51 12.46 6.44 -10.98 -0.07 12.38 16 14 O -0.60 -15.50 14.15 5.55 0.08 -15.43 16 15 C 0.09 2.01 2.09 -69.08 -0.14 1.87 16 16 H 0.17 4.35 2.88 -51.93 -0.15 4.20 16 17 C -0.15 -2.88 9.07 37.16 0.34 -2.54 16 18 N -0.50 -10.75 2.47 -111.87 -0.28 -11.03 16 19 C 0.18 3.25 7.93 -16.85 -0.13 3.12 16 20 C -0.25 -4.07 10.03 -37.70 -0.38 -4.45 16 21 C 0.02 0.39 5.89 -104.92 -0.62 -0.23 16 22 C -0.14 -1.82 9.83 -39.63 -0.39 -2.21 16 23 C -0.09 -1.06 9.96 -39.89 -0.40 -1.46 16 24 C -0.16 -2.05 9.96 -39.87 -0.40 -2.45 16 25 C -0.04 -0.73 9.62 -39.66 -0.38 -1.12 16 26 C -0.16 -3.00 5.90 -104.83 -0.62 -3.62 16 27 C 0.54 12.12 7.62 -12.85 -0.10 12.02 16 28 O -0.51 -12.83 15.81 5.11 0.08 -12.75 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.39 8.07 -51.93 -0.42 0.97 16 35 H 0.06 1.36 7.37 -51.93 -0.38 0.98 16 36 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.10 1.85 6.64 -51.93 -0.34 1.51 16 39 H 0.05 0.87 7.03 -51.93 -0.37 0.50 16 40 H 0.15 2.65 6.66 -52.49 -0.35 2.30 16 41 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.13 2.15 7.80 -52.48 -0.41 1.74 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -30.31 367.69 -8.71 -39.02 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.20 Total: 11.32 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -3.28 Total: 1.86 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.10 Total: -43.61 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: 0.16 Total: -28.17 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.31 -8.71 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346210035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.736 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds