Wall clock time and date at job start Tue Mar 31 2020 16:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 N 1.46493 * 109.46732 * 180.02562 * 3 2 1 5 5 C 1.37104 * 120.00163 * 273.58078 * 4 3 2 6 6 H 1.07997 * 119.99617 * 55.55808 * 5 4 3 7 7 C 1.38944 * 120.00423 * 235.55920 * 5 4 3 8 8 N 1.31419 * 119.99744 * 20.87089 * 7 5 4 9 9 Si 1.86801 * 120.00300 * 200.86825 * 7 5 4 10 10 H 1.48492 * 109.46987 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47004 * 119.99899 * 9 7 5 12 12 H 1.48494 * 109.47260 * 239.99883 * 9 7 5 13 13 C 1.34783 * 119.99972 * 93.58834 * 4 3 2 14 14 O 1.21285 * 119.99944 * 356.30484 * 13 4 3 15 15 C 1.50699 * 119.99544 * 176.58031 * 13 4 3 16 16 H 1.08996 * 109.47299 * 315.08773 * 15 13 4 17 17 C 1.53002 * 109.47516 * 75.09368 * 15 13 4 18 18 N 1.46501 * 109.46874 * 195.09170 * 15 13 4 19 19 C 1.36542 * 118.85929 * 300.00018 * 18 15 13 20 20 C 1.34290 * 122.41084 * 179.97438 * 19 18 15 21 21 C 1.46375 * 119.41757 * 0.02562 * 20 19 18 22 22 C 1.39583 * 122.03979 * 179.97438 * 21 20 19 23 23 C 1.36715 * 119.49150 * 180.02562 * 22 21 20 24 24 C 1.38904 * 120.88955 * 359.97438 * 23 22 21 25 25 C 1.36749 * 120.88669 * 0.02562 * 24 23 22 26 26 C 1.39470 * 119.50574 * 0.02562 * 25 24 23 27 27 C 1.34781 * 118.86882 * 119.73226 * 18 15 13 28 28 O 1.21790 * 120.38117 * 359.97396 * 27 18 15 29 29 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47326 * 299.99705 * 1 2 3 31 31 H 1.08998 * 109.47142 * 59.99773 * 1 2 3 32 32 H 1.08996 * 109.46664 * 240.00251 * 2 1 3 33 33 H 1.08998 * 109.47142 * 120.00227 * 2 1 3 34 34 H 1.09003 * 109.46757 * 59.99946 * 3 2 1 35 35 H 1.08998 * 109.47275 * 300.00145 * 3 2 1 36 36 H 0.96999 * 119.99933 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47323 * 183.13415 * 17 15 13 38 38 H 1.08999 * 109.46490 * 303.13119 * 17 15 13 39 39 H 1.08997 * 109.46938 * 63.13150 * 17 15 13 40 40 H 1.07994 * 118.79583 * 359.97438 * 19 18 15 41 41 H 1.08002 * 120.29537 * 179.97438 * 20 19 18 42 42 H 1.08005 * 120.25026 * 0.02562 * 22 21 20 43 43 H 1.07999 * 119.55666 * 180.02562 * 23 22 21 44 44 H 1.07998 * 119.55852 * 180.02562 * 24 23 22 45 45 H 1.08003 * 120.24803 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.1910 1.3680 1.1841 6 1 4.0031 0.5524 1.8665 7 6 5.1279 2.3420 1.5068 8 7 5.0811 3.5180 0.9222 9 14 6.4541 1.9798 2.7715 10 1 6.2896 0.5936 3.2781 11 1 7.7912 2.1204 2.1409 12 1 6.3362 2.9372 3.9005 13 6 4.1784 1.5156 -1.1659 14 8 3.5734 1.5139 -2.2170 15 6 5.6834 1.5932 -1.1627 16 1 6.0085 2.3121 -0.4107 17 6 6.2645 0.2160 -0.8365 18 7 6.1530 2.0213 -2.4827 19 6 5.8504 1.2538 -3.5707 20 6 6.2439 1.5789 -4.8128 21 6 7.0270 2.7975 -5.0230 22 6 7.4647 3.1871 -6.2899 23 6 8.1937 4.3356 -6.4264 24 6 8.5035 5.1191 -5.3220 25 6 8.0880 4.7619 -4.0691 26 6 7.3435 3.5948 -3.8990 27 6 6.8642 3.1619 -2.5820 28 8 7.1098 3.8230 -1.5891 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 5.7354 4.1979 1.1471 37 1 7.3508 0.2842 -0.7794 38 1 5.8712 -0.1269 0.1204 39 1 5.9855 -0.4905 -1.6183 40 1 5.2734 0.3522 -3.4270 41 1 5.9856 0.9463 -5.6492 42 1 7.2292 2.5858 -7.1557 43 1 8.5325 4.6383 -7.4062 44 1 9.0804 6.0224 -5.4546 45 1 8.3351 5.3785 -3.2175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346210035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:01 Heat of formation + Delta-G solvation = -38.487593 kcal Electronic energy + Delta-G solvation = -29063.693325 eV Core-core repulsion = 25238.764084 eV Total energy + Delta-G solvation = -3824.929240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.39385 -40.64511 -39.25018 -37.92937 -36.82184 -35.46785 -34.13098 -32.96968 -32.38373 -31.24035 -30.13821 -27.67770 -26.76912 -25.61259 -24.74951 -23.89794 -22.61841 -22.34335 -21.40730 -19.62860 -18.78875 -18.63926 -18.08952 -17.13747 -16.94773 -16.52554 -16.27591 -16.08108 -15.90485 -15.75551 -15.43358 -15.36943 -14.87331 -14.75647 -14.25978 -13.99616 -13.78687 -13.68212 -13.62885 -13.52095 -13.18645 -13.08274 -12.99641 -12.83419 -12.65969 -12.54033 -12.44814 -12.25801 -12.14739 -12.02626 -11.93883 -11.52750 -11.09079 -10.86112 -10.51120 -10.17870 -10.00499 -9.32441 -8.58521 -8.40966 -6.32957 -0.17728 0.03818 1.25791 1.33614 1.41660 1.53205 1.62461 1.98810 2.03779 2.23619 2.89070 2.92496 3.09506 3.49652 3.72232 3.85626 4.00890 4.10109 4.13074 4.14621 4.23077 4.28982 4.38727 4.40377 4.46066 4.52208 4.65655 4.74121 4.79662 4.82461 4.91365 4.95243 5.04781 5.05838 5.09510 5.15710 5.18782 5.30541 5.38488 5.40294 5.46060 5.50389 5.52161 5.70113 5.96718 5.99971 6.31034 6.55912 6.87828 6.94886 7.47691 7.93211 8.59465 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.004722 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.601998 B = 5928.376120 C = 7276.892940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.112 3.888 4 N -0.451 5.451 5 C -0.362 4.362 6 H 0.099 0.901 7 C 0.017 3.983 8 N -0.870 5.870 9 Si 0.950 3.050 10 H -0.235 1.235 11 H -0.284 1.284 12 H -0.278 1.278 13 C 0.495 3.505 14 O -0.623 6.623 15 C 0.083 3.917 16 H 0.144 0.856 17 C -0.143 4.143 18 N -0.503 5.503 19 C 0.131 3.869 20 C -0.220 4.220 21 C -0.001 4.001 22 C -0.125 4.125 23 C -0.076 4.076 24 C -0.139 4.139 25 C -0.073 4.073 26 C -0.188 4.188 27 C 0.518 3.482 28 O -0.563 6.563 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.271 0.729 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.157 0.843 41 H 0.182 0.818 42 H 0.167 0.833 43 H 0.170 0.830 44 H 0.156 0.844 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 -5.213 -11.129 12.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C -0.011 4.011 4 N -0.170 5.170 5 C -0.489 4.489 6 H 0.117 0.883 7 C -0.189 4.189 8 N -0.505 5.505 9 Si 0.773 3.227 10 H -0.158 1.158 11 H -0.210 1.210 12 H -0.204 1.204 13 C 0.284 3.716 14 O -0.510 6.510 15 C -0.022 4.022 16 H 0.161 0.839 17 C -0.201 4.201 18 N -0.216 5.216 19 C 0.010 3.990 20 C -0.243 4.243 21 C -0.003 4.003 22 C -0.143 4.143 23 C -0.094 4.094 24 C -0.157 4.157 25 C -0.092 4.092 26 C -0.191 4.191 27 C 0.315 3.685 28 O -0.445 6.445 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.174 0.826 41 H 0.199 0.801 42 H 0.184 0.816 43 H 0.187 0.813 44 H 0.173 0.827 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.052 -4.652 -10.932 12.553 hybrid contribution 0.305 0.602 1.254 1.424 sum 4.356 -4.050 -9.679 11.360 Atomic orbital electron populations 1.21646 0.93572 1.02558 1.01870 1.21674 0.97150 0.95640 1.01305 1.21558 0.82042 0.97517 0.99996 1.43407 1.04332 1.64258 1.04968 1.19537 1.21281 1.09512 0.98563 0.88318 1.26342 1.00836 0.93254 0.98428 1.70055 1.34063 1.03376 1.42959 0.85520 0.78331 0.80412 0.78442 1.15765 1.21025 1.20384 1.20620 0.89587 0.77650 0.83743 1.90472 1.70778 1.57499 1.32289 1.21926 0.92970 1.02058 0.85232 0.83911 1.21989 1.00767 0.93095 1.04245 1.45080 1.45952 1.21469 1.09102 1.21677 0.94822 0.95971 0.86519 1.21750 1.06822 0.99608 0.96126 1.19456 0.94251 0.93220 0.93326 1.21271 0.99047 0.98427 0.95509 1.21510 0.94719 0.93050 1.00092 1.21211 1.01556 1.01780 0.91150 1.20886 0.95099 0.93919 0.99282 1.20023 1.06942 1.00471 0.91653 1.18913 0.78921 0.80160 0.90507 1.90822 1.59249 1.54509 1.39913 0.90865 0.92058 0.93164 0.93582 0.91689 0.91900 0.94202 0.91934 0.91721 0.88848 0.90830 0.82565 0.80099 0.81567 0.81299 0.82655 0.86554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.08 16 2 C -0.12 -4.20 6.25 30.60 0.19 -4.01 16 3 C 0.11 4.94 5.40 86.38 0.47 5.40 16 4 N -0.45 -22.49 2.39 -635.55 -1.52 -24.01 16 5 C -0.36 -17.76 7.28 84.04 0.61 -17.15 16 6 H 0.10 4.54 7.91 -2.91 -0.02 4.52 16 7 C 0.02 0.86 3.35 84.92 0.28 1.15 16 8 N -0.87 -49.63 11.69 21.66 0.25 -49.38 16 9 Si 0.95 40.19 29.60 68.60 2.03 42.22 16 10 H -0.24 -8.83 7.11 99.48 0.71 -8.12 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 13 C 0.50 25.48 6.44 87.66 0.56 26.05 16 14 O -0.62 -33.40 14.15 -3.04 -0.04 -33.44 16 15 C 0.08 4.02 2.09 44.25 0.09 4.11 16 16 H 0.14 7.81 2.88 -2.39 -0.01 7.81 16 17 C -0.14 -5.58 9.07 71.98 0.65 -4.93 16 18 N -0.50 -22.84 2.47 -626.02 -1.55 -24.38 16 19 C 0.13 4.89 7.93 83.06 0.66 5.55 16 20 C -0.22 -6.69 10.03 23.49 0.24 -6.45 16 21 C 0.00 -0.02 5.89 -20.06 -0.12 -0.14 16 22 C -0.12 -2.73 9.83 22.24 0.22 -2.51 16 23 C -0.08 -1.43 9.96 22.07 0.22 -1.21 16 24 C -0.14 -3.24 9.96 22.08 0.22 -3.03 16 25 C -0.07 -2.43 9.62 22.22 0.21 -2.22 16 26 C -0.19 -7.30 5.90 -20.00 -0.12 -7.41 16 27 C 0.52 24.88 7.62 86.45 0.66 25.54 16 28 O -0.56 -30.99 15.81 -4.64 -0.07 -31.06 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.06 2.75 8.07 -2.39 -0.02 2.73 16 35 H 0.04 1.89 7.37 -2.39 -0.02 1.87 16 36 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.09 3.63 6.64 -2.39 -0.02 3.62 16 39 H 0.07 2.48 7.03 -2.39 -0.02 2.46 16 40 H 0.16 5.52 6.66 -2.91 -0.02 5.50 16 41 H 0.18 3.83 8.06 -2.91 -0.02 3.81 16 42 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 43 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 44 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 45 H 0.12 4.11 7.80 -2.91 -0.02 4.09 16 Total: -1.00 -72.89 367.69 5.87 -67.03 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: 1.00 Total: 37.37 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 5.77 Total: 15.66 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -2.81 Total: -97.77 kcal Atomic # 8 Polarization: -64.38 SS G_CDS: -0.12 Total: -64.50 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -72.89 5.87 -67.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346210035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.540 kcal (2) G-P(sol) polarization free energy of solvation -72.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds