Wall clock time and date at job start Tue Mar 31 2020 16:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47418 * 2 1 4 4 N 1.46490 * 109.47500 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00423 * 276.12821 * 4 3 2 6 6 H 1.07993 * 120.00740 * 149.65419 * 5 4 3 7 7 C 1.38953 * 119.99378 * 329.66081 * 5 4 3 8 8 N 1.31413 * 119.99964 * 337.33715 * 7 5 4 9 9 Si 1.86799 * 120.00028 * 157.34525 * 7 5 4 10 10 H 1.48507 * 109.47025 * 94.98453 * 9 7 5 11 11 H 1.48501 * 109.47179 * 214.98602 * 9 7 5 12 12 H 1.48496 * 109.47133 * 334.98884 * 9 7 5 13 13 C 1.34777 * 120.00487 * 96.12248 * 4 3 2 14 14 O 1.21287 * 120.00863 * 184.57200 * 13 4 3 15 15 C 1.50710 * 119.99501 * 4.57147 * 13 4 3 16 16 H 1.09005 * 109.46820 * 316.05089 * 15 13 4 17 17 C 1.53000 * 109.47024 * 76.05342 * 15 13 4 18 18 O 1.42902 * 109.46774 * 196.05569 * 15 13 4 19 19 C 1.35912 * 116.99724 * 151.91452 * 18 15 13 20 20 C 1.39846 * 120.09465 * 5.60220 * 19 18 15 21 21 N 1.31027 * 121.66379 * 180.02562 * 20 19 18 22 22 C 1.33681 * 121.39893 * 359.97438 * 21 20 19 23 23 C 1.40602 * 121.00234 * 180.02562 * 22 21 20 24 24 C 1.36065 * 119.76827 * 179.97438 * 23 22 21 25 25 C 1.39362 * 121.07132 * 0.04926 * 24 23 22 26 26 C 1.36122 * 120.86326 * 359.97119 * 25 24 23 27 27 C 1.40468 * 119.62172 * 0.02562 * 26 25 24 28 28 C 1.37002 * 120.08940 * 185.32593 * 19 18 15 29 29 H 1.09002 * 109.47056 * 59.99530 * 1 2 3 30 30 H 1.08995 * 109.47366 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47179 * 300.00465 * 1 2 3 32 32 H 1.09001 * 109.47108 * 240.00087 * 2 1 3 33 33 H 1.08993 * 109.47154 * 120.00229 * 2 1 3 34 34 H 1.09001 * 109.46910 * 59.99966 * 3 2 1 35 35 H 1.09002 * 109.47390 * 300.00265 * 3 2 1 36 36 H 0.97006 * 119.99717 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.46810 * 56.97333 * 17 15 13 38 38 H 1.08996 * 109.46998 * 296.97039 * 17 15 13 39 39 H 1.09002 * 109.46681 * 176.96892 * 17 15 13 40 40 H 1.07998 * 119.16923 * 359.97438 * 20 19 18 41 41 H 1.08007 * 120.11281 * 359.97438 * 23 22 21 42 42 H 1.08004 * 119.46565 * 180.02562 * 24 23 22 43 43 H 1.07998 * 119.56961 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.18876 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.94073 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1911 1.3156 1.1796 6 1 5.1601 0.8390 1.1924 7 6 3.6395 1.8001 2.3593 8 7 2.7230 2.7410 2.3182 9 14 4.2009 1.1143 4.0036 10 1 5.2693 1.9811 4.5627 11 1 3.0513 1.0771 4.9429 12 1 4.7285 -0.2606 3.8123 13 6 4.1785 1.5671 -1.1614 14 8 5.3884 1.4841 -1.1726 15 6 3.4280 1.8097 -2.4456 16 1 2.5582 1.1541 -2.4875 17 6 2.9702 3.2686 -2.5010 18 8 4.2843 1.5366 -3.5565 19 6 3.6893 1.1304 -4.7090 20 6 2.2945 1.1083 -4.8080 21 7 1.6888 0.7219 -5.9037 22 6 2.3786 0.3308 -6.9799 23 6 1.7200 -0.0817 -8.1517 24 6 2.4470 -0.4744 -9.2327 25 6 3.8403 -0.4765 -9.2002 26 6 4.5133 -0.0844 -8.0839 27 6 3.7953 0.3274 -6.9490 28 6 4.4543 0.7470 -5.7789 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9564 -0.8900 36 1 2.3382 3.0795 3.1418 37 1 3.8353 3.9247 -2.4049 38 1 2.2747 3.4624 -1.6844 39 1 2.4745 3.4579 -3.4531 40 1 1.7016 1.4166 -3.9596 41 1 0.6407 -0.0869 -8.1935 42 1 1.9361 -0.7899 -10.1304 43 1 4.3932 -0.7925 -10.0724 44 1 5.5932 -0.0907 -8.0705 45 1 5.5327 0.7609 -5.7237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348159152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:14 Heat of formation + Delta-G solvation = -10.479288 kcal Electronic energy + Delta-G solvation = -27878.599835 eV Core-core repulsion = 24054.885126 eV Total energy + Delta-G solvation = -3823.714709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.11739 -39.57225 -38.13200 -36.49293 -35.32882 -33.45392 -32.79156 -31.80077 -30.92012 -30.33477 -29.33114 -26.04189 -25.15643 -24.59041 -23.92162 -22.78372 -22.13709 -20.93368 -19.56999 -18.46712 -17.87060 -17.29655 -16.91064 -16.02046 -15.77484 -15.38739 -14.92946 -14.73611 -14.51620 -14.32065 -14.05079 -13.89976 -13.70423 -13.64247 -13.36760 -13.18985 -12.91398 -12.33311 -12.15191 -12.00293 -11.89116 -11.67073 -11.66465 -11.50046 -11.43395 -11.15817 -11.08935 -10.97384 -10.63614 -10.39541 -10.32070 -10.06278 -9.93134 -9.57034 -9.12387 -8.68516 -8.46948 -7.98384 -7.60737 -6.39775 -4.03097 0.28890 0.77457 1.92954 2.80475 3.07501 3.11143 3.21703 3.30179 3.67754 4.02409 4.09091 4.21432 4.47349 4.56221 4.67556 4.71299 4.88407 4.92988 5.04373 5.06368 5.09744 5.28674 5.35365 5.44321 5.56548 5.57980 5.68678 5.69885 5.82604 5.86509 5.89981 5.99612 6.00637 6.09877 6.18516 6.27929 6.32002 6.38454 6.41232 6.48090 6.56470 6.68865 6.88915 7.24535 7.36830 7.55179 7.75807 8.10186 8.40772 9.05955 9.28609 9.84582 10.59139 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.002911 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.400555 B = 9615.601195 C =10216.083153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.078 3.922 4 N -0.431 5.431 5 C -0.304 4.304 6 H 0.096 0.904 7 C 0.036 3.964 8 N -0.867 5.867 9 Si 0.920 3.080 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.459 3.541 14 O -0.562 6.562 15 C 0.066 3.934 16 H 0.083 0.917 17 C -0.170 4.170 18 O -0.275 6.275 19 C 0.090 3.910 20 C 0.067 3.933 21 N -0.440 5.440 22 C 0.086 3.914 23 C -0.078 4.078 24 C -0.121 4.121 25 C -0.110 4.110 26 C -0.105 4.105 27 C -0.059 4.059 28 C -0.116 4.116 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.131 0.869 35 H 0.049 0.951 36 H 0.269 0.731 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.166 0.834 41 H 0.133 0.867 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 -3.804 -16.508 17.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.046 4.046 4 N -0.151 5.151 5 C -0.431 4.431 6 H 0.114 0.886 7 C -0.168 4.168 8 N -0.505 5.505 9 Si 0.746 3.254 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.245 3.755 14 O -0.444 6.444 15 C 0.006 3.994 16 H 0.101 0.899 17 C -0.228 4.228 18 O -0.185 6.185 19 C 0.041 3.959 20 C -0.107 4.107 21 N -0.148 5.148 22 C -0.035 4.035 23 C -0.096 4.096 24 C -0.141 4.141 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.061 4.061 28 C -0.143 4.143 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.148 0.852 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.183 0.817 41 H 0.151 0.849 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.589 -3.742 -16.435 17.758 hybrid contribution 0.765 -0.210 0.950 1.238 sum -4.824 -3.952 -15.485 16.693 Atomic orbital electron populations 1.21681 0.96219 1.00828 1.01563 1.21871 0.94847 0.98972 1.01799 1.22145 0.81729 0.95655 1.05073 1.43455 1.04809 1.62161 1.04640 1.19508 1.04575 1.36362 0.82695 0.88588 1.25287 0.97198 0.94458 0.99845 1.69745 1.28747 1.23316 1.28710 0.86025 0.78326 0.79839 0.81232 1.20309 1.20664 1.19278 1.19733 0.87920 0.83544 0.84261 1.90557 1.13835 1.53986 1.86019 1.22522 0.93156 0.97956 0.85735 0.89901 1.22294 1.03004 0.94674 1.02815 1.86319 1.35031 1.79925 1.17273 1.19889 0.92555 0.95190 0.88271 1.23372 0.91429 0.98884 0.97028 1.67926 1.39255 1.08710 0.98896 1.18853 0.89694 1.01207 0.93771 1.20755 1.00323 0.97602 0.90955 1.20823 0.94095 1.00610 0.98546 1.20897 0.94473 0.99225 0.98163 1.20951 0.99961 0.99308 0.92146 1.18598 0.93696 0.99350 0.94506 1.20668 1.00919 1.01961 0.90756 0.93238 0.93375 0.92553 0.93660 0.91330 0.85197 0.93260 0.92036 0.90717 0.89399 0.91968 0.81690 0.84903 0.85518 0.85648 0.85176 0.83503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.14 -2.44 6.22 -26.73 -0.17 -2.61 16 3 C 0.08 1.58 4.59 -4.05 -0.02 1.57 16 4 N -0.43 -10.48 2.58 -114.82 -0.30 -10.78 16 5 C -0.30 -8.13 9.05 -14.93 -0.14 -8.27 16 6 H 0.10 2.73 7.59 -52.49 -0.40 2.33 16 7 C 0.04 0.90 5.05 -17.47 -0.09 0.82 16 8 N -0.87 -21.88 10.99 55.50 0.61 -21.27 16 9 Si 0.92 19.91 29.61 -169.99 -5.03 14.88 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 13 C 0.46 11.13 6.91 -10.98 -0.08 11.05 16 14 O -0.56 -15.94 16.34 -13.83 -0.23 -16.17 16 15 C 0.07 1.24 1.76 -27.88 -0.05 1.19 16 16 H 0.08 1.38 5.09 -51.93 -0.26 1.12 16 17 C -0.17 -2.78 8.93 37.16 0.33 -2.45 16 18 O -0.27 -5.26 9.36 -38.84 -0.36 -5.62 16 19 C 0.09 1.46 6.60 -39.43 -0.26 1.20 16 20 C 0.07 1.00 9.54 -17.29 -0.16 0.84 16 21 N -0.44 -6.60 10.33 -10.85 -0.11 -6.71 16 22 C 0.09 1.20 6.60 -84.85 -0.56 0.64 16 23 C -0.08 -0.87 9.98 -39.47 -0.39 -1.26 16 24 C -0.12 -1.08 9.94 -39.94 -0.40 -1.48 16 25 C -0.11 -0.97 9.95 -39.92 -0.40 -1.37 16 26 C -0.10 -1.10 9.77 -39.50 -0.39 -1.49 16 27 C -0.06 -0.80 5.74 -106.81 -0.61 -1.41 16 28 C -0.12 -1.69 9.82 -39.10 -0.38 -2.08 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.13 2.94 5.07 -51.93 -0.26 2.67 16 35 H 0.05 0.87 4.52 -51.93 -0.23 0.64 16 36 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.09 1.42 6.38 -51.93 -0.33 1.08 16 39 H 0.06 0.84 7.31 -51.93 -0.38 0.46 16 40 H 0.17 2.20 5.54 -52.49 -0.29 1.91 16 41 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.15 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -31.35 369.86 -9.19 -40.54 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.95 Total: 6.38 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -3.39 Total: -6.83 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.20 Total: -38.75 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.59 Total: -21.79 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.35 -9.19 -40.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348159152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.060 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds