Wall clock time and date at job start Tue Mar 31 2020 16:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47418 * 2 1 4 4 N 1.46490 * 109.47500 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00423 * 276.12821 * 4 3 2 6 6 H 1.07993 * 120.00740 * 149.65419 * 5 4 3 7 7 C 1.38953 * 119.99378 * 329.66081 * 5 4 3 8 8 N 1.31413 * 119.99964 * 337.33715 * 7 5 4 9 9 Si 1.86799 * 120.00028 * 157.34525 * 7 5 4 10 10 H 1.48507 * 109.47025 * 94.98453 * 9 7 5 11 11 H 1.48501 * 109.47179 * 214.98602 * 9 7 5 12 12 H 1.48496 * 109.47133 * 334.98884 * 9 7 5 13 13 C 1.34777 * 120.00487 * 96.12248 * 4 3 2 14 14 O 1.21287 * 120.00863 * 184.57200 * 13 4 3 15 15 C 1.50710 * 119.99501 * 4.57147 * 13 4 3 16 16 H 1.09005 * 109.46820 * 316.05089 * 15 13 4 17 17 C 1.53000 * 109.47024 * 76.05342 * 15 13 4 18 18 O 1.42902 * 109.46774 * 196.05569 * 15 13 4 19 19 C 1.35912 * 116.99724 * 151.91452 * 18 15 13 20 20 C 1.39846 * 120.09465 * 5.60220 * 19 18 15 21 21 N 1.31027 * 121.66379 * 180.02562 * 20 19 18 22 22 C 1.33681 * 121.39893 * 359.97438 * 21 20 19 23 23 C 1.40602 * 121.00234 * 180.02562 * 22 21 20 24 24 C 1.36065 * 119.76827 * 179.97438 * 23 22 21 25 25 C 1.39362 * 121.07132 * 0.04926 * 24 23 22 26 26 C 1.36122 * 120.86326 * 359.97119 * 25 24 23 27 27 C 1.40468 * 119.62172 * 0.02562 * 26 25 24 28 28 C 1.37002 * 120.08940 * 185.32593 * 19 18 15 29 29 H 1.09002 * 109.47056 * 59.99530 * 1 2 3 30 30 H 1.08995 * 109.47366 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47179 * 300.00465 * 1 2 3 32 32 H 1.09001 * 109.47108 * 240.00087 * 2 1 3 33 33 H 1.08993 * 109.47154 * 120.00229 * 2 1 3 34 34 H 1.09001 * 109.46910 * 59.99966 * 3 2 1 35 35 H 1.09002 * 109.47390 * 300.00265 * 3 2 1 36 36 H 0.97006 * 119.99717 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.46810 * 56.97333 * 17 15 13 38 38 H 1.08996 * 109.46998 * 296.97039 * 17 15 13 39 39 H 1.09002 * 109.46681 * 176.96892 * 17 15 13 40 40 H 1.07998 * 119.16923 * 359.97438 * 20 19 18 41 41 H 1.08007 * 120.11281 * 359.97438 * 23 22 21 42 42 H 1.08004 * 119.46565 * 180.02562 * 24 23 22 43 43 H 1.07998 * 119.56961 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.18876 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.94073 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1911 1.3156 1.1796 6 1 5.1601 0.8390 1.1924 7 6 3.6395 1.8001 2.3593 8 7 2.7230 2.7410 2.3182 9 14 4.2009 1.1143 4.0036 10 1 5.2693 1.9811 4.5627 11 1 3.0513 1.0771 4.9429 12 1 4.7285 -0.2606 3.8123 13 6 4.1785 1.5671 -1.1614 14 8 5.3884 1.4841 -1.1726 15 6 3.4280 1.8097 -2.4456 16 1 2.5582 1.1541 -2.4875 17 6 2.9702 3.2686 -2.5010 18 8 4.2843 1.5366 -3.5565 19 6 3.6893 1.1304 -4.7090 20 6 2.2945 1.1083 -4.8080 21 7 1.6888 0.7219 -5.9037 22 6 2.3786 0.3308 -6.9799 23 6 1.7200 -0.0817 -8.1517 24 6 2.4470 -0.4744 -9.2327 25 6 3.8403 -0.4765 -9.2002 26 6 4.5133 -0.0844 -8.0839 27 6 3.7953 0.3274 -6.9490 28 6 4.4543 0.7470 -5.7789 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9564 -0.8900 36 1 2.3382 3.0795 3.1418 37 1 3.8353 3.9247 -2.4049 38 1 2.2747 3.4624 -1.6844 39 1 2.4745 3.4579 -3.4531 40 1 1.7016 1.4166 -3.9596 41 1 0.6407 -0.0869 -8.1935 42 1 1.9361 -0.7899 -10.1304 43 1 4.3932 -0.7925 -10.0724 44 1 5.5932 -0.0907 -8.0705 45 1 5.5327 0.7609 -5.7237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348159152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:13 Heat of formation + Delta-G solvation = -27.587840 kcal Electronic energy + Delta-G solvation = -27879.341718 eV Core-core repulsion = 24054.885126 eV Total energy + Delta-G solvation = -3824.456592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.21259 -41.02629 -39.60521 -37.54972 -37.12959 -34.71454 -34.31310 -33.32643 -32.48347 -31.25475 -30.35272 -27.77538 -26.76290 -25.64231 -25.22965 -23.98122 -23.08783 -22.40985 -21.15742 -19.61416 -19.01146 -18.88342 -18.44451 -17.53010 -16.94537 -16.71520 -16.60106 -16.09995 -15.74692 -15.61680 -15.39674 -15.15680 -15.06945 -14.75831 -14.63335 -14.41688 -14.12925 -13.93779 -13.53809 -13.39883 -13.21594 -13.07182 -12.88112 -12.71957 -12.62761 -12.56478 -12.42045 -12.30284 -12.17442 -12.09326 -11.98590 -11.52207 -11.09811 -11.00025 -10.67236 -10.36143 -9.57587 -9.52831 -9.02195 -8.34042 -6.06498 -0.65593 -0.20287 0.97685 1.33192 1.41097 1.52002 1.73872 1.87664 1.92356 2.32839 2.96406 3.00868 3.07104 3.21996 3.40290 3.63823 3.67501 3.75776 3.87887 3.91827 4.02949 4.15156 4.21826 4.30006 4.33576 4.44187 4.47729 4.53908 4.61637 4.68414 4.75757 4.79692 4.97589 4.99686 5.08599 5.09712 5.13289 5.28769 5.35027 5.40138 5.45764 5.46511 5.50315 5.64482 5.88442 6.05862 6.20097 6.49644 6.71169 7.10751 7.37323 7.94280 8.62628 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.002911 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.400555 B = 9615.601195 C =10216.083153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.076 3.924 4 N -0.437 5.437 5 C -0.343 4.343 6 H 0.063 0.937 7 C 0.011 3.989 8 N -0.875 5.875 9 Si 0.978 3.022 10 H -0.277 1.277 11 H -0.262 1.262 12 H -0.273 1.273 13 C 0.441 3.559 14 O -0.620 6.620 15 C 0.080 3.920 16 H 0.105 0.895 17 C -0.162 4.162 18 O -0.303 6.303 19 C 0.060 3.940 20 C 0.060 3.940 21 N -0.450 5.450 22 C 0.066 3.934 23 C -0.097 4.097 24 C -0.103 4.103 25 C -0.098 4.098 26 C -0.116 4.116 27 C -0.076 4.076 28 C -0.117 4.117 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.277 0.723 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.177 0.823 41 H 0.145 0.855 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.149 0.851 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.416 -4.611 -19.012 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C -0.046 4.046 4 N -0.155 5.155 5 C -0.471 4.471 6 H 0.081 0.919 7 C -0.192 4.192 8 N -0.513 5.513 9 Si 0.801 3.199 10 H -0.203 1.203 11 H -0.186 1.186 12 H -0.198 1.198 13 C 0.229 3.771 14 O -0.507 6.507 15 C 0.021 3.979 16 H 0.123 0.877 17 C -0.219 4.219 18 O -0.215 6.215 19 C 0.013 3.987 20 C -0.113 4.113 21 N -0.159 5.159 22 C -0.055 4.055 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.115 4.115 26 C -0.135 4.135 27 C -0.078 4.078 28 C -0.144 4.144 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.194 0.806 41 H 0.163 0.837 42 H 0.182 0.818 43 H 0.181 0.819 44 H 0.167 0.833 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.682 -4.540 -18.945 20.941 hybrid contribution 1.425 -0.018 1.498 2.068 sum -6.256 -4.558 -17.447 19.087 Atomic orbital electron populations 1.21633 0.92948 1.02392 1.02512 1.21807 0.97582 0.96859 1.00745 1.22290 0.79443 0.97478 1.05436 1.43692 1.06350 1.61283 1.04197 1.19376 1.04545 1.38419 0.84776 0.91880 1.25930 0.97027 0.94110 1.02124 1.69802 1.28612 1.22952 1.29935 0.85172 0.78393 0.78732 0.77579 1.20332 1.18644 1.19764 1.20668 0.87742 0.82498 0.86146 1.90496 1.16419 1.56486 1.87255 1.22258 0.92496 0.99771 0.83371 0.87722 1.22252 1.02414 0.92559 1.04712 1.86257 1.35935 1.81115 1.18173 1.20049 0.93487 0.97484 0.87707 1.23428 0.90853 0.99436 0.97614 1.67945 1.39552 1.09129 0.99247 1.19341 0.90273 1.01474 0.94435 1.21016 1.01265 0.98539 0.90733 1.21322 0.94316 0.97781 0.98847 1.21394 0.94736 0.96889 0.98516 1.21254 1.01096 0.99368 0.91763 1.18828 0.93902 1.00002 0.95026 1.20926 1.01318 1.01109 0.91004 0.91168 0.91538 0.92716 0.93460 0.93722 0.86965 0.90507 0.91243 0.92594 0.89074 0.88657 0.80593 0.83734 0.81808 0.81924 0.83340 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.95 16 2 C -0.13 -4.69 6.22 30.59 0.19 -4.50 16 3 C 0.08 3.13 4.59 86.38 0.40 3.53 16 4 N -0.44 -22.19 2.58 -635.55 -1.64 -23.83 16 5 C -0.34 -19.36 9.05 84.04 0.76 -18.60 16 6 H 0.06 3.89 7.59 -2.91 -0.02 3.86 16 7 C 0.01 0.59 5.05 84.93 0.43 1.02 16 8 N -0.88 -44.50 10.99 21.66 0.24 -44.26 16 9 Si 0.98 41.45 29.61 68.60 2.03 43.48 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 C 0.44 22.56 6.91 87.66 0.61 23.17 16 14 O -0.62 -37.76 16.34 15.48 0.25 -37.51 16 15 C 0.08 3.11 1.76 29.85 0.05 3.16 16 16 H 0.11 3.49 5.09 -2.38 -0.01 3.48 16 17 C -0.16 -5.31 8.93 71.98 0.64 -4.67 16 18 O -0.30 -12.10 9.36 -74.03 -0.69 -12.80 16 19 C 0.06 2.00 6.60 22.37 0.15 2.15 16 20 C 0.06 1.79 9.54 85.20 0.81 2.60 16 21 N -0.45 -13.19 10.33 -188.24 -1.95 -15.13 16 22 C 0.07 1.77 6.60 40.30 0.27 2.04 16 23 C -0.10 -1.91 9.98 22.34 0.22 -1.69 16 24 C -0.10 -1.40 9.94 22.03 0.22 -1.18 16 25 C -0.10 -1.30 9.95 22.05 0.22 -1.09 16 26 C -0.12 -2.15 9.77 22.32 0.22 -1.93 16 27 C -0.08 -1.96 5.74 -21.28 -0.12 -2.08 16 28 C -0.12 -3.46 9.82 22.58 0.22 -3.24 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.11 5.11 5.07 -2.39 -0.01 5.10 16 35 H 0.08 2.67 4.52 -2.39 -0.01 2.66 16 36 H 0.28 13.06 8.31 -92.70 -0.77 12.29 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.09 2.89 6.38 -2.39 -0.02 2.87 16 39 H 0.09 2.48 7.31 -2.39 -0.02 2.46 16 40 H 0.18 4.55 5.54 -2.91 -0.02 4.53 16 41 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 42 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 43 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 44 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 45 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -73.37 369.86 5.25 -68.12 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 1.01 Total: 26.20 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 6.00 Total: -4.27 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -3.35 Total: -83.22 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -0.44 Total: -50.30 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -73.37 5.25 -68.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348159152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.527 kcal (2) G-P(sol) polarization free energy of solvation -73.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds