Wall clock time and date at job start Tue Mar 31 2020 15:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46881 * 2 1 4 4 H 1.09001 * 109.60538 * 57.97187 * 3 2 1 5 5 C 1.52921 * 109.68839 * 297.56959 * 3 2 1 6 6 N 1.46963 * 108.87260 * 190.97028 * 5 3 2 7 7 C 1.34784 * 120.58935 * 235.20904 * 6 5 3 8 8 O 1.21284 * 119.99435 * 174.45047 * 7 6 5 9 9 C 1.50696 * 120.00282 * 354.45324 * 7 6 5 10 10 S 1.81000 * 109.47030 * 180.02562 * 9 7 6 11 11 C 1.76197 * 99.99872 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00265 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00191 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99856 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00477 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47287 * 180.02562 * 15 13 11 17 17 H 1.48499 * 109.46830 * 299.99962 * 15 13 11 18 18 H 1.48498 * 109.46965 * 59.99736 * 15 13 11 19 19 C 1.46964 * 118.81607 * 54.93192 * 6 5 3 20 20 H 1.09000 * 109.60693 * 64.77076 * 19 6 5 21 21 C 1.52993 * 109.61054 * 185.28300 * 19 6 5 22 22 C 1.53006 * 109.47101 * 182.47001 * 21 19 6 23 23 C 1.53372 * 108.63074 * 305.03023 * 19 6 5 24 24 N 1.46960 * 108.63721 * 49.42218 * 23 19 6 25 25 C 1.34779 * 120.59629 * 124.75309 * 24 23 19 26 26 C 1.50697 * 119.99652 * 5.06316 * 25 24 23 27 27 O 1.21280 * 120.00290 * 185.06628 * 25 24 23 28 28 H 1.08996 * 109.46793 * 186.26376 * 1 2 3 29 29 H 1.08999 * 109.47459 * 306.26225 * 1 2 3 30 30 H 1.09001 * 109.47183 * 66.26293 * 1 2 3 31 31 H 1.08994 * 109.47395 * 240.00059 * 2 1 3 32 32 H 1.09003 * 109.47209 * 119.99654 * 2 1 3 33 33 H 1.09007 * 109.52912 * 71.12766 * 5 3 2 34 34 H 1.08999 * 109.46304 * 310.76726 * 5 3 2 35 35 H 1.09003 * 109.47191 * 59.99881 * 9 7 6 36 36 H 1.09002 * 109.46995 * 300.00015 * 9 7 6 37 37 H 0.96994 * 120.00040 * 0.02562 * 14 13 11 38 38 H 1.08995 * 109.47832 * 302.47161 * 21 19 6 39 39 H 1.09004 * 109.47167 * 62.47463 * 21 19 6 40 40 H 1.09000 * 109.46844 * 302.73905 * 22 21 19 41 41 H 1.09002 * 109.46874 * 62.73255 * 22 21 19 42 42 H 1.08992 * 109.47178 * 182.74017 * 22 21 19 43 43 H 1.08996 * 109.60831 * 169.16736 * 23 19 6 44 44 H 1.09000 * 109.60663 * 289.50241 * 23 19 6 45 45 H 1.08996 * 109.47293 * 60.00081 * 26 25 24 46 46 H 1.09001 * 109.47154 * 180.02562 * 26 25 24 47 47 H 1.08999 * 109.47282 * 300.00097 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6485 1.9689 0.8705 5 6 1.5834 2.1504 -1.2763 6 7 2.2918 3.4332 -1.3878 7 6 1.6062 4.5862 -1.5196 8 8 2.1951 5.6464 -1.5095 9 6 0.1079 4.5579 -1.6792 10 16 -0.5145 6.2506 -1.8321 11 6 -2.2385 5.9285 -2.0018 12 1 -2.6015 4.9114 -1.9900 13 6 -3.1300 6.9818 -2.1508 14 7 -2.6876 8.2215 -2.1648 15 14 -4.9577 6.6403 -2.3301 16 1 -5.6894 7.9245 -2.4742 17 1 -5.1889 5.8018 -3.5337 18 1 -5.4478 5.9232 -1.1257 19 6 3.7609 3.4371 -1.3470 20 1 4.1523 2.9081 -2.2159 21 6 4.2707 4.8796 -1.3470 22 6 5.8007 4.8797 -1.3666 23 6 4.2172 2.7297 -0.0649 24 7 3.5091 1.4464 0.0409 25 6 4.1946 0.2934 0.1727 26 6 5.6933 0.3215 0.3273 27 8 3.6053 -0.7666 0.1667 28 1 -0.3633 -1.0215 0.1121 29 1 -0.3634 0.6078 0.8286 30 1 -0.3633 0.4137 -0.9407 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.5090 2.3286 -1.2298 34 1 1.8163 1.5277 -2.1401 35 1 -0.3415 4.0824 -0.8074 36 1 -0.1514 3.9935 -2.5749 37 1 -1.7386 8.3988 -2.0713 38 1 3.8961 5.3975 -2.2298 39 1 3.9189 5.3893 -0.4500 40 1 6.1750 4.3200 -0.5094 41 1 6.1522 4.4130 -2.2868 42 1 6.1646 5.9059 -1.3175 43 1 5.2918 2.5522 -0.1078 44 1 3.9835 3.3518 0.7991 45 1 5.9558 0.8875 1.2210 46 1 6.0682 -0.6979 0.4193 47 1 6.1400 0.7950 -0.5469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349018277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:51 Heat of formation + Delta-G solvation = -48.843374 kcal Electronic energy + Delta-G solvation = -27317.015995 eV Core-core repulsion = 23627.081646 eV Total energy + Delta-G solvation = -3689.934349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19685 -39.65809 -37.15212 -35.53140 -34.23920 -33.19699 -32.55987 -30.22729 -29.53516 -28.64075 -27.01337 -25.15228 -24.77352 -23.49004 -21.84074 -21.50718 -19.93168 -18.96797 -18.16088 -16.93179 -16.80112 -16.41391 -16.13608 -15.90902 -15.50446 -14.58691 -14.30286 -14.22539 -13.95564 -13.87813 -13.77189 -13.75522 -13.33667 -13.19043 -13.07666 -12.69920 -12.50913 -12.42368 -12.28029 -12.15837 -12.09288 -12.00593 -11.89138 -11.76526 -11.14707 -11.08122 -10.94317 -10.89407 -10.71950 -10.19432 -9.60363 -9.42604 -9.30031 -9.04239 -8.89800 -8.33914 -8.26140 -6.71018 -6.65096 -4.03430 2.31278 2.47158 2.82405 2.84940 3.28058 3.35991 3.38030 3.55855 4.15842 4.21992 4.41969 4.50134 4.61061 4.73316 4.80401 4.85994 4.89333 4.97326 5.01486 5.06012 5.15288 5.19597 5.27493 5.30623 5.34506 5.34587 5.40316 5.47318 5.51523 5.60130 5.61746 5.67976 5.70183 5.93685 5.98399 6.01644 6.07096 6.12624 6.22535 6.29258 6.44243 6.66792 7.08068 7.37290 7.88372 7.88727 8.37677 8.47123 9.23737 10.78827 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.003501 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.010303 B = 7995.723871 C = 9670.486283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 C 0.131 3.869 4 H 0.078 0.922 5 C 0.097 3.903 6 N -0.618 5.618 7 C 0.535 3.465 8 O -0.505 6.505 9 C -0.132 4.132 10 S -0.114 6.114 11 C -0.608 4.608 12 H 0.065 0.935 13 C 0.036 3.964 14 N -0.884 5.884 15 Si 1.083 2.917 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.137 3.863 20 H 0.073 0.927 21 C -0.113 4.113 22 C -0.161 4.161 23 C 0.094 3.906 24 N -0.611 5.611 25 C 0.512 3.488 26 C -0.177 4.177 27 O -0.537 6.537 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.278 0.722 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.608 -15.847 4.536 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.144 4.144 3 C 0.028 3.972 4 H 0.096 0.904 5 C -0.027 4.027 6 N -0.354 5.354 7 C 0.323 3.677 8 O -0.380 6.380 9 C -0.283 4.283 10 S 0.112 5.888 11 C -0.756 4.756 12 H 0.084 0.916 13 C -0.174 4.174 14 N -0.518 5.518 15 Si 0.909 3.091 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.211 1.211 19 C 0.033 3.967 20 H 0.091 0.909 21 C -0.151 4.151 22 C -0.219 4.219 23 C -0.030 4.030 24 N -0.345 5.345 25 C 0.301 3.699 26 C -0.237 4.237 27 O -0.415 6.415 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.713 -14.078 4.350 21.542 hybrid contribution 0.674 -2.092 0.171 2.204 sum 16.387 -16.170 4.521 23.462 Atomic orbital electron populations 1.22023 0.96355 1.02050 1.01920 1.22026 0.94096 0.93062 1.05202 1.21750 0.79080 0.98407 0.98010 0.90364 1.22186 0.98353 0.84471 0.97670 1.48087 1.05813 1.06615 1.74852 1.20306 0.89187 0.82990 0.75186 1.90736 1.68934 1.30073 1.48247 1.23407 0.93804 1.06249 1.04794 1.84772 1.06756 1.01442 1.95804 1.23691 0.91197 0.97956 1.62715 0.91640 1.26042 1.06335 0.91983 0.93076 1.70806 1.18003 1.19783 1.43182 0.83345 0.73039 0.76019 0.76725 1.20265 1.21115 1.21100 1.21669 0.79971 0.98343 0.96758 0.90878 1.22104 0.93543 0.93219 1.06237 1.22012 0.96856 1.02058 1.00968 1.22386 0.97397 0.84289 0.98887 1.48181 1.06684 1.06754 1.72831 1.20794 0.90212 0.83171 0.75691 1.22008 0.92302 1.05399 1.03962 1.90768 1.69966 1.30536 1.50251 0.92277 0.92684 0.92651 0.90548 0.89397 0.88017 0.90924 0.89135 0.89083 0.91003 0.88648 0.90197 0.93241 0.93067 0.92187 0.88422 0.90466 0.89441 0.88974 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.47 37.16 0.35 -1.28 16 2 C -0.11 -1.15 3.82 -26.73 -0.10 -1.25 16 3 C 0.13 1.42 3.13 -67.71 -0.21 1.21 16 4 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 5 C 0.10 1.12 5.17 -3.83 -0.02 1.10 16 6 N -0.62 -8.28 2.95 -165.22 -0.49 -8.77 16 7 C 0.53 9.43 7.62 -10.98 -0.08 9.34 16 8 O -0.51 -10.18 11.26 5.55 0.06 -10.12 16 9 C -0.13 -2.59 4.55 36.00 0.16 -2.42 16 10 S -0.11 -2.99 19.60 -107.50 -2.11 -5.09 16 11 C -0.61 -17.24 9.50 30.94 0.29 -16.94 16 12 H 0.07 1.78 7.80 -52.49 -0.41 1.37 16 13 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 14 N -0.88 -27.19 13.67 55.49 0.76 -26.43 16 15 Si 1.08 24.70 29.92 -169.99 -5.09 19.61 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.14 1.50 3.14 -67.49 -0.21 1.29 16 20 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 21 C -0.11 -1.37 3.81 -26.73 -0.10 -1.47 16 22 C -0.16 -1.40 9.72 37.16 0.36 -1.03 16 23 C 0.09 0.82 5.21 -3.60 -0.02 0.80 16 24 N -0.61 -6.01 2.95 -165.21 -0.49 -6.49 16 25 C 0.51 5.10 7.72 -10.99 -0.08 5.02 16 26 C -0.18 -1.06 8.71 36.00 0.31 -0.75 16 27 O -0.54 -6.99 12.47 5.56 0.07 -6.93 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.53 7.11 -51.93 -0.37 0.16 16 31 H 0.08 0.92 7.05 -51.93 -0.37 0.55 16 32 H 0.09 1.08 6.41 -51.93 -0.33 0.75 16 33 H 0.10 1.19 5.07 -51.93 -0.26 0.92 16 34 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.09 1.67 7.49 -51.92 -0.39 1.28 16 36 H 0.09 1.70 8.10 -51.91 -0.42 1.28 16 37 H 0.28 8.70 7.12 -40.82 -0.29 8.41 16 38 H 0.10 1.46 6.36 -51.93 -0.33 1.13 16 39 H 0.08 1.13 7.10 -51.93 -0.37 0.76 16 40 H 0.05 0.33 6.66 -51.93 -0.35 -0.01 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.57 4.87 -51.93 -0.25 0.32 16 44 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 45 H 0.09 0.40 8.09 -51.93 -0.42 -0.02 16 46 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 47 H 0.09 0.39 7.51 -51.93 -0.39 0.00 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -33.99 371.13 -8.68 -42.67 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.54 Total: 1.41 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 0.55 Total: -5.45 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -0.22 Total: -41.70 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.13 Total: -17.04 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.09 Total: 19.61 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -2.11 Total: -5.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.99 -8.68 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349018277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.177 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds