Wall clock time and date at job start Tue Mar 31 2020 15:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46881 * 2 1 4 4 H 1.09001 * 109.60538 * 57.97187 * 3 2 1 5 5 C 1.52921 * 109.68839 * 297.56959 * 3 2 1 6 6 N 1.46963 * 108.87260 * 190.97028 * 5 3 2 7 7 C 1.34784 * 120.58935 * 235.20904 * 6 5 3 8 8 O 1.21284 * 119.99435 * 174.45047 * 7 6 5 9 9 C 1.50696 * 120.00282 * 354.45324 * 7 6 5 10 10 S 1.81000 * 109.47030 * 180.02562 * 9 7 6 11 11 C 1.76197 * 99.99872 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00265 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00191 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99856 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00477 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47287 * 180.02562 * 15 13 11 17 17 H 1.48499 * 109.46830 * 299.99962 * 15 13 11 18 18 H 1.48498 * 109.46965 * 59.99736 * 15 13 11 19 19 C 1.46964 * 118.81607 * 54.93192 * 6 5 3 20 20 H 1.09000 * 109.60693 * 64.77076 * 19 6 5 21 21 C 1.52993 * 109.61054 * 185.28300 * 19 6 5 22 22 C 1.53006 * 109.47101 * 182.47001 * 21 19 6 23 23 C 1.53372 * 108.63074 * 305.03023 * 19 6 5 24 24 N 1.46960 * 108.63721 * 49.42218 * 23 19 6 25 25 C 1.34779 * 120.59629 * 124.75309 * 24 23 19 26 26 C 1.50697 * 119.99652 * 5.06316 * 25 24 23 27 27 O 1.21280 * 120.00290 * 185.06628 * 25 24 23 28 28 H 1.08996 * 109.46793 * 186.26376 * 1 2 3 29 29 H 1.08999 * 109.47459 * 306.26225 * 1 2 3 30 30 H 1.09001 * 109.47183 * 66.26293 * 1 2 3 31 31 H 1.08994 * 109.47395 * 240.00059 * 2 1 3 32 32 H 1.09003 * 109.47209 * 119.99654 * 2 1 3 33 33 H 1.09007 * 109.52912 * 71.12766 * 5 3 2 34 34 H 1.08999 * 109.46304 * 310.76726 * 5 3 2 35 35 H 1.09003 * 109.47191 * 59.99881 * 9 7 6 36 36 H 1.09002 * 109.46995 * 300.00015 * 9 7 6 37 37 H 0.96994 * 120.00040 * 0.02562 * 14 13 11 38 38 H 1.08995 * 109.47832 * 302.47161 * 21 19 6 39 39 H 1.09004 * 109.47167 * 62.47463 * 21 19 6 40 40 H 1.09000 * 109.46844 * 302.73905 * 22 21 19 41 41 H 1.09002 * 109.46874 * 62.73255 * 22 21 19 42 42 H 1.08992 * 109.47178 * 182.74017 * 22 21 19 43 43 H 1.08996 * 109.60831 * 169.16736 * 23 19 6 44 44 H 1.09000 * 109.60663 * 289.50241 * 23 19 6 45 45 H 1.08996 * 109.47293 * 60.00081 * 26 25 24 46 46 H 1.09001 * 109.47154 * 180.02562 * 26 25 24 47 47 H 1.08999 * 109.47282 * 300.00097 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6485 1.9689 0.8705 5 6 1.5834 2.1504 -1.2763 6 7 2.2918 3.4332 -1.3878 7 6 1.6062 4.5862 -1.5196 8 8 2.1951 5.6464 -1.5095 9 6 0.1079 4.5579 -1.6792 10 16 -0.5145 6.2506 -1.8321 11 6 -2.2385 5.9285 -2.0018 12 1 -2.6015 4.9114 -1.9900 13 6 -3.1300 6.9818 -2.1508 14 7 -2.6876 8.2215 -2.1648 15 14 -4.9577 6.6403 -2.3301 16 1 -5.6894 7.9245 -2.4742 17 1 -5.1889 5.8018 -3.5337 18 1 -5.4478 5.9232 -1.1257 19 6 3.7609 3.4371 -1.3470 20 1 4.1523 2.9081 -2.2159 21 6 4.2707 4.8796 -1.3470 22 6 5.8007 4.8797 -1.3666 23 6 4.2172 2.7297 -0.0649 24 7 3.5091 1.4464 0.0409 25 6 4.1946 0.2934 0.1727 26 6 5.6933 0.3215 0.3273 27 8 3.6053 -0.7666 0.1667 28 1 -0.3633 -1.0215 0.1121 29 1 -0.3634 0.6078 0.8286 30 1 -0.3633 0.4137 -0.9407 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.5090 2.3286 -1.2298 34 1 1.8163 1.5277 -2.1401 35 1 -0.3415 4.0824 -0.8074 36 1 -0.1514 3.9935 -2.5749 37 1 -1.7386 8.3988 -2.0713 38 1 3.8961 5.3975 -2.2298 39 1 3.9189 5.3893 -0.4500 40 1 6.1750 4.3200 -0.5094 41 1 6.1522 4.4130 -2.2868 42 1 6.1646 5.9059 -1.3175 43 1 5.2918 2.5522 -0.1078 44 1 3.9835 3.3518 0.7991 45 1 5.9558 0.8875 1.2210 46 1 6.0682 -0.6979 0.4193 47 1 6.1400 0.7950 -0.5469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349018277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:50 Heat of formation + Delta-G solvation = -70.301333 kcal Electronic energy + Delta-G solvation = -27317.946482 eV Core-core repulsion = 23627.081646 eV Total energy + Delta-G solvation = -3690.864836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.16564 -40.74593 -38.22189 -36.42370 -35.28048 -34.75435 -34.11782 -31.17040 -30.57299 -29.53873 -27.96938 -27.09358 -25.88027 -24.41079 -22.76872 -22.42529 -21.06683 -20.40500 -19.70981 -17.89768 -17.83110 -17.44079 -17.23586 -16.96635 -16.55781 -16.28094 -15.71976 -15.24730 -15.23390 -14.87856 -14.84118 -14.68786 -14.56551 -14.26006 -14.08099 -14.02972 -13.76094 -13.60085 -13.19591 -13.14755 -13.05758 -12.93683 -12.80086 -12.74722 -12.72176 -11.99100 -11.96986 -11.95288 -11.76501 -11.63391 -11.54607 -11.10323 -10.42641 -10.32468 -10.20307 -10.11978 -9.34187 -8.92830 -8.86803 -6.27800 1.12773 1.42323 1.50504 1.59508 1.60610 1.73097 1.80266 2.04971 2.32896 3.01679 3.05343 3.34629 3.52577 3.64995 3.69922 3.89418 3.93619 4.01725 4.06377 4.10374 4.23769 4.24898 4.31916 4.46162 4.47046 4.49491 4.54403 4.56120 4.62765 4.68236 4.77295 4.79000 4.88636 5.08557 5.19582 5.23096 5.25488 5.26601 5.31744 5.32731 5.56309 5.63424 5.67738 6.10721 6.15343 6.36763 7.03016 7.05597 7.13729 8.50814 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.003501 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.010303 B = 7995.723871 C = 9670.486283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.091 4.091 3 C 0.133 3.867 4 H 0.073 0.927 5 C 0.097 3.903 6 N -0.607 5.607 7 C 0.535 3.465 8 O -0.537 6.537 9 C -0.110 4.110 10 S -0.185 6.185 11 C -0.615 4.615 12 H 0.073 0.927 13 C -0.017 4.017 14 N -0.913 5.913 15 Si 1.134 2.866 16 H -0.280 1.280 17 H -0.264 1.264 18 H -0.263 1.263 19 C 0.133 3.867 20 H 0.090 0.910 21 C -0.106 4.106 22 C -0.153 4.153 23 C 0.101 3.899 24 N -0.612 5.612 25 C 0.506 3.494 26 C -0.172 4.172 27 O -0.573 6.573 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.261 0.739 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.137 0.863 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.092 0.908 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.816 -18.194 4.846 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.129 4.129 3 C 0.029 3.971 4 H 0.091 0.909 5 C -0.027 4.027 6 N -0.341 5.341 7 C 0.322 3.678 8 O -0.415 6.415 9 C -0.262 4.262 10 S 0.042 5.958 11 C -0.762 4.762 12 H 0.091 0.909 13 C -0.220 4.220 14 N -0.548 5.548 15 Si 0.951 3.049 16 H -0.205 1.205 17 H -0.189 1.189 18 H -0.188 1.188 19 C 0.030 3.970 20 H 0.108 0.892 21 C -0.144 4.144 22 C -0.211 4.211 23 C -0.022 4.022 24 N -0.345 5.345 25 C 0.297 3.703 26 C -0.231 4.231 27 O -0.453 6.453 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.154 0.846 44 H 0.091 0.909 45 H 0.126 0.874 46 H 0.111 0.889 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 16.974 -16.469 4.669 24.108 hybrid contribution 0.408 -1.460 0.084 1.518 sum 17.383 -17.929 4.754 25.421 Atomic orbital electron populations 1.22016 0.95712 1.02426 1.02050 1.21821 0.94521 0.92665 1.03939 1.21642 0.80262 0.98053 0.97161 0.90932 1.22309 0.98164 0.83544 0.98651 1.48050 1.07110 1.05864 1.73074 1.19968 0.88305 0.83833 0.75684 1.90761 1.69138 1.31551 1.50020 1.23306 0.95613 1.01314 1.05922 1.84943 1.06983 1.07842 1.96049 1.24030 0.92000 0.98371 1.61833 0.90891 1.27769 1.11034 0.91347 0.91885 1.70922 1.17024 1.21170 1.45698 0.82750 0.67471 0.76311 0.78320 1.20509 1.18876 1.18806 1.21915 0.78034 0.98115 0.98940 0.89220 1.21843 0.96172 0.93255 1.03116 1.21941 0.93681 1.02470 1.02974 1.22425 0.99320 0.83357 0.97083 1.48255 1.06160 1.07360 1.72713 1.21558 0.91842 0.82364 0.74516 1.22046 0.88798 1.06294 1.05942 1.90763 1.71100 1.31714 1.51733 0.91805 0.92670 0.92375 0.91640 0.90765 0.88250 0.89812 0.87759 0.87936 0.92788 0.92465 0.92840 0.90342 0.91691 0.92835 0.84555 0.90876 0.87355 0.88890 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.47 71.98 0.68 -2.37 16 2 C -0.09 -1.89 3.82 30.60 0.12 -1.77 16 3 C 0.13 2.68 3.13 44.88 0.14 2.82 16 4 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 5 C 0.10 2.08 5.17 86.26 0.45 2.52 16 6 N -0.61 -15.62 2.95 -795.02 -2.35 -17.97 16 7 C 0.53 18.98 7.62 87.65 0.67 19.65 16 8 O -0.54 -22.46 11.26 -3.04 -0.03 -22.50 16 9 C -0.11 -4.34 4.55 71.23 0.32 -4.02 16 10 S -0.19 -10.00 19.60 -56.49 -1.11 -11.11 16 11 C -0.61 -35.20 9.50 67.95 0.65 -34.56 16 12 H 0.07 3.93 7.80 -2.91 -0.02 3.91 16 13 C -0.02 -0.98 5.49 84.86 0.47 -0.51 16 14 N -0.91 -57.63 13.67 21.65 0.30 -57.34 16 15 Si 1.13 49.10 29.92 68.60 2.05 51.16 16 16 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 18 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 19 C 0.13 2.64 3.14 45.03 0.14 2.79 16 20 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 21 C -0.11 -2.49 3.81 30.59 0.12 -2.37 16 22 C -0.15 -2.26 9.72 71.98 0.70 -1.56 16 23 C 0.10 1.43 5.21 86.42 0.45 1.88 16 24 N -0.61 -10.47 2.95 -794.99 -2.34 -12.81 16 25 C 0.51 8.73 7.72 87.66 0.68 9.40 16 26 C -0.17 -1.35 8.71 71.23 0.62 -0.73 16 27 O -0.57 -14.08 12.47 -3.03 -0.04 -14.11 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.04 7.11 -2.39 -0.02 1.02 16 31 H 0.06 1.51 7.05 -2.39 -0.02 1.49 16 32 H 0.07 1.78 6.41 -2.39 -0.02 1.76 16 33 H 0.10 2.18 5.07 -2.38 -0.01 2.17 16 34 H 0.08 1.67 8.11 -2.39 -0.02 1.65 16 35 H 0.10 3.80 7.49 -2.39 -0.02 3.78 16 36 H 0.10 3.78 8.10 -2.39 -0.02 3.76 16 37 H 0.26 17.08 7.12 -92.71 -0.66 16.42 16 38 H 0.06 1.80 6.36 -2.39 -0.02 1.78 16 39 H 0.05 1.54 7.10 -2.38 -0.02 1.52 16 40 H 0.08 0.71 6.66 -2.39 -0.02 0.70 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.14 0.89 4.87 -2.39 -0.01 0.88 16 44 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 45 H 0.11 0.45 8.09 -2.39 -0.02 0.43 16 46 H 0.09 0.78 8.12 -2.39 -0.02 0.76 16 47 H 0.11 0.39 7.51 -2.39 -0.02 0.38 16 Total: -1.00 -77.76 371.13 3.74 -74.03 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 1.07 Total: 19.50 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 6.19 Total: -8.84 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -4.40 Total: -88.12 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -0.07 Total: -36.61 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 2.05 Total: 51.16 kcal Atomic # 16 Polarization: -10.00 SS G_CDS: -1.11 Total: -11.11 kcal Total: -77.76 3.74 -74.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349018277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.725 kcal (2) G-P(sol) polarization free energy of solvation -77.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds