Wall clock time and date at job start Tue Mar 31 2020 16:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00391 * 2 1 4 4 N 1.46494 * 109.47481 * 124.99779 * 3 2 1 5 5 C 1.34527 * 126.69045 * 267.34051 * 4 3 2 6 6 O 1.21531 * 123.77141 * 0.03639 * 5 4 3 7 7 N 1.33799 * 112.45651 * 179.87456 * 5 4 3 8 8 C 1.46492 * 124.17659 * 180.14107 * 7 5 4 9 9 C 1.53000 * 109.47262 * 270.29993 * 8 7 5 10 10 C 1.50699 * 109.47279 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00190 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99972 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00031 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00074 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47038 * 90.00257 * 14 12 10 16 16 H 1.48499 * 109.47154 * 209.99741 * 14 12 10 17 17 H 1.48498 * 109.47290 * 330.00169 * 14 12 10 18 18 C 1.34770 * 111.64090 * 0.40934 * 7 5 4 19 19 O 1.21231 * 127.15044 * 179.73459 * 18 7 5 20 20 C 1.47316 * 126.68948 * 87.65304 * 4 3 2 21 21 H 1.08994 * 110.60282 * 298.49537 * 20 4 3 22 22 C 1.53001 * 110.59431 * 61.28479 * 20 4 3 23 23 C 1.50699 * 109.46628 * 185.77723 * 22 20 4 24 24 C 1.38241 * 120.00094 * 263.66243 * 23 22 20 25 25 C 1.38236 * 119.99957 * 179.78729 * 24 23 22 26 26 C 1.38237 * 120.00052 * 0.44999 * 25 24 23 27 27 C 1.38232 * 120.00139 * 359.80631 * 26 25 24 28 28 C 1.38237 * 120.00096 * 83.94170 * 23 22 20 29 29 H 1.08004 * 119.99913 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.99909 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.00237 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46962 * 4.99876 * 3 2 1 33 33 H 1.09004 * 109.46912 * 245.00132 * 3 2 1 34 34 H 1.09001 * 109.47527 * 30.30678 * 8 7 5 35 35 H 1.09006 * 109.47315 * 150.30603 * 8 7 5 36 36 H 1.08995 * 109.47378 * 300.00302 * 9 8 7 37 37 H 1.09005 * 109.46976 * 60.00084 * 9 8 7 38 38 H 0.97004 * 119.99780 * 180.02562 * 13 12 10 39 39 H 1.08998 * 109.47668 * 305.77366 * 22 20 4 40 40 H 1.08998 * 109.47705 * 65.77904 * 22 20 4 41 41 H 1.08001 * 119.99813 * 0.02562 * 24 23 22 42 42 H 1.08003 * 119.99988 * 180.27754 * 25 24 23 43 43 H 1.08001 * 119.99708 * 179.83570 * 26 25 24 44 44 H 1.07994 * 120.00504 * 180.02562 * 27 26 25 45 45 H 1.07992 * 119.99860 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7550 1.8337 2.3565 6 8 1.7014 2.3428 2.6845 7 7 3.8061 1.7065 3.1746 8 6 3.8253 2.1624 4.5667 9 6 4.3142 3.6111 4.6222 10 6 4.3345 4.0799 6.0543 11 1 4.0297 3.4113 6.8457 12 6 4.7423 5.3624 6.3541 13 7 5.1140 6.1765 5.3904 14 14 4.7669 5.9437 8.1292 15 1 6.0930 5.6481 8.7286 16 1 4.5185 7.4071 8.1743 17 1 3.7088 5.2381 8.8959 18 6 4.8469 1.1124 2.5580 19 8 5.9343 0.8638 3.0328 20 6 4.3752 0.8204 1.1474 21 1 4.3894 -0.2519 0.9525 22 6 5.2361 1.5634 0.1238 23 6 6.6012 0.9282 0.0602 24 6 7.6456 1.4594 0.7937 25 6 8.8968 0.8741 0.7387 26 6 9.1058 -0.2368 -0.0569 27 6 8.0627 -0.7649 -0.7945 28 6 6.8105 -0.1822 -0.7361 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 2.8197 2.1020 4.9828 35 1 4.4971 1.5298 5.1470 36 1 5.3198 3.6715 4.2062 37 1 3.6424 4.2437 4.0420 38 1 5.4012 7.0786 5.6014 39 1 4.7637 1.5081 -0.8569 40 1 5.3347 2.6074 0.4213 41 1 7.4832 2.3294 1.4127 42 1 9.7117 1.2865 1.3153 43 1 10.0839 -0.6925 -0.1018 44 1 8.2259 -1.6330 -1.4158 45 1 5.9955 -0.5948 -1.3123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349032136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:37 Heat of formation + Delta-G solvation = 2.304350 kcal Electronic energy + Delta-G solvation = -28040.178806 eV Core-core repulsion = 24217.018437 eV Total energy + Delta-G solvation = -3823.160369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13919 -39.27578 -38.21834 -36.62605 -35.47046 -34.37137 -33.25505 -32.40840 -30.87812 -30.17976 -28.80052 -26.85425 -24.99526 -24.46737 -22.62402 -22.06312 -21.68534 -21.06914 -19.95517 -19.69139 -17.21665 -17.04817 -16.63836 -16.53754 -15.92545 -15.54676 -15.25816 -15.14399 -14.84112 -14.61877 -14.39859 -14.00314 -13.89383 -13.69520 -13.36212 -13.16436 -12.99837 -12.90037 -12.50385 -12.40952 -12.21784 -11.84253 -11.55922 -11.50724 -11.15150 -10.98471 -10.96180 -10.82538 -10.43845 -10.14739 -10.07029 -9.84979 -9.60135 -9.24426 -9.14676 -8.89596 -8.78883 -8.64163 -8.38591 -6.03648 -4.07183 1.28612 1.43509 1.84136 1.98458 2.58274 3.23703 3.32598 3.38470 3.41482 3.42948 3.75714 4.16979 4.44962 4.53784 4.65063 4.75782 4.81962 4.85664 4.98251 5.00903 5.03183 5.13925 5.27391 5.33168 5.45797 5.49822 5.63360 5.66778 5.70523 5.74086 5.99230 6.06090 6.08557 6.17787 6.32044 6.36451 6.39685 6.43012 6.53839 6.61085 6.65433 6.69193 7.00268 7.43680 7.58087 7.73181 7.75783 7.93432 8.28363 8.46061 8.97804 9.56834 11.08040 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.004213 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.058533 B = 6644.130927 C = 9163.955911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.183 4.183 3 C 0.178 3.822 4 N -0.626 5.626 5 C 0.701 3.299 6 O -0.536 6.536 7 N -0.569 5.569 8 C 0.120 3.880 9 C 0.014 3.986 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.521 3.479 19 O -0.458 6.458 20 C 0.099 3.901 21 H 0.118 0.882 22 C -0.076 4.076 23 C -0.088 4.088 24 C -0.082 4.082 25 C -0.116 4.116 26 C -0.120 4.120 27 C -0.127 4.127 28 C -0.114 4.114 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.020 0.980 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 -14.823 -17.491 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.202 4.202 3 C 0.058 3.942 4 N -0.365 5.365 5 C 0.403 3.597 6 O -0.409 6.409 7 N -0.313 5.313 8 C 0.001 3.999 9 C -0.024 4.024 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.531 5.531 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C 0.307 3.693 19 O -0.327 6.327 20 C -0.009 4.009 21 H 0.136 0.864 22 C -0.114 4.114 23 C -0.088 4.088 24 C -0.101 4.101 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.145 4.145 28 C -0.132 4.132 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.339 -14.457 -17.063 22.366 hybrid contribution 0.082 0.325 0.997 1.052 sum 0.422 -14.132 -16.066 21.401 Atomic orbital electron populations 1.23927 0.95831 1.02259 0.98275 1.23289 0.96404 0.98779 1.01736 1.20353 0.90884 0.96297 0.86715 1.47701 1.13224 1.63601 1.12004 1.15938 0.83916 0.78909 0.80915 1.90956 1.25371 1.47256 1.77274 1.46756 1.13813 1.55141 1.15571 1.22188 1.03046 0.99801 0.74864 1.19393 0.96787 0.88113 0.98102 1.20999 1.45007 0.98049 0.91955 0.92271 1.24983 0.95048 0.96637 0.97472 1.69973 1.44291 1.06994 1.31818 0.86516 0.78446 0.77881 0.84723 1.20565 1.21157 1.19717 1.20636 0.84279 0.76872 0.87517 1.90793 1.20050 1.50488 1.71385 1.22094 0.82559 1.01157 0.95099 0.86407 1.20681 0.91852 1.00055 0.98805 1.19564 0.94487 0.96559 0.98203 1.21131 0.92421 0.99765 0.96735 1.21157 0.97334 0.96219 0.98717 1.21141 0.98931 0.96584 0.97193 1.21043 0.93215 1.00089 1.00142 1.20945 0.97236 0.95814 0.99240 0.88070 0.88274 0.87212 0.88728 0.89084 0.89826 0.89953 0.96118 0.95831 0.92881 0.89048 0.89592 0.85859 0.86034 0.86384 0.86350 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 14.32 29.02 0.42 -1.02 16 2 C -0.18 -1.65 9.85 -36.02 -0.35 -2.00 16 3 C 0.18 1.76 6.47 -5.20 -0.03 1.73 16 4 N -0.63 -8.35 2.72 -173.77 -0.47 -8.83 16 5 C 0.70 12.86 8.31 -88.01 -0.73 12.12 16 6 O -0.54 -11.60 17.12 5.34 0.09 -11.51 16 7 N -0.57 -10.92 2.60 -120.73 -0.31 -11.24 16 8 C 0.12 2.63 5.63 -4.05 -0.02 2.61 16 9 C 0.01 0.37 5.30 -27.88 -0.15 0.22 16 10 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 14 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.52 8.92 7.47 -10.56 -0.08 8.85 16 19 O -0.46 -8.83 15.91 5.60 0.09 -8.74 16 20 C 0.10 1.22 3.42 -68.20 -0.23 0.99 16 21 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 22 C -0.08 -0.82 5.06 -27.88 -0.14 -0.96 16 23 C -0.09 -1.02 4.73 -104.62 -0.50 -1.52 16 24 C -0.08 -1.11 8.12 -39.58 -0.32 -1.43 16 25 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 26 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 27 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 28 C -0.11 -1.12 9.73 -39.58 -0.38 -1.51 16 29 H 0.10 0.89 7.84 -52.48 -0.41 0.47 16 30 H 0.10 0.73 8.06 -52.48 -0.42 0.31 16 31 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.09 1.03 7.63 -51.93 -0.40 0.63 16 33 H 0.09 0.62 7.21 -51.93 -0.37 0.25 16 34 H 0.08 1.83 7.87 -51.93 -0.41 1.42 16 35 H 0.08 1.74 8.00 -51.93 -0.42 1.33 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.09 0.73 7.21 -51.93 -0.37 0.35 16 40 H 0.09 1.08 8.02 -51.93 -0.42 0.67 16 41 H 0.12 1.84 8.03 -52.49 -0.42 1.42 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -34.50 386.25 -9.77 -44.27 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.57 Total: 0.29 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -4.13 Total: -0.58 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.05 Total: -46.41 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.18 Total: -20.25 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.50 -9.77 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349032136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.579 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds