Wall clock time and date at job start Tue Mar 31 2020 16:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00391 * 2 1 4 4 N 1.46494 * 109.47481 * 124.99779 * 3 2 1 5 5 C 1.34527 * 126.69045 * 267.34051 * 4 3 2 6 6 O 1.21531 * 123.77141 * 0.03639 * 5 4 3 7 7 N 1.33799 * 112.45651 * 179.87456 * 5 4 3 8 8 C 1.46492 * 124.17659 * 180.14107 * 7 5 4 9 9 C 1.53000 * 109.47262 * 270.29993 * 8 7 5 10 10 C 1.50699 * 109.47279 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00190 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99972 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00031 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00074 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47038 * 90.00257 * 14 12 10 16 16 H 1.48499 * 109.47154 * 209.99741 * 14 12 10 17 17 H 1.48498 * 109.47290 * 330.00169 * 14 12 10 18 18 C 1.34770 * 111.64090 * 0.40934 * 7 5 4 19 19 O 1.21231 * 127.15044 * 179.73459 * 18 7 5 20 20 C 1.47316 * 126.68948 * 87.65304 * 4 3 2 21 21 H 1.08994 * 110.60282 * 298.49537 * 20 4 3 22 22 C 1.53001 * 110.59431 * 61.28479 * 20 4 3 23 23 C 1.50699 * 109.46628 * 185.77723 * 22 20 4 24 24 C 1.38241 * 120.00094 * 263.66243 * 23 22 20 25 25 C 1.38236 * 119.99957 * 179.78729 * 24 23 22 26 26 C 1.38237 * 120.00052 * 0.44999 * 25 24 23 27 27 C 1.38232 * 120.00139 * 359.80631 * 26 25 24 28 28 C 1.38237 * 120.00096 * 83.94170 * 23 22 20 29 29 H 1.08004 * 119.99913 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.99909 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.00237 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46962 * 4.99876 * 3 2 1 33 33 H 1.09004 * 109.46912 * 245.00132 * 3 2 1 34 34 H 1.09001 * 109.47527 * 30.30678 * 8 7 5 35 35 H 1.09006 * 109.47315 * 150.30603 * 8 7 5 36 36 H 1.08995 * 109.47378 * 300.00302 * 9 8 7 37 37 H 1.09005 * 109.46976 * 60.00084 * 9 8 7 38 38 H 0.97004 * 119.99780 * 180.02562 * 13 12 10 39 39 H 1.08998 * 109.47668 * 305.77366 * 22 20 4 40 40 H 1.08998 * 109.47705 * 65.77904 * 22 20 4 41 41 H 1.08001 * 119.99813 * 0.02562 * 24 23 22 42 42 H 1.08003 * 119.99988 * 180.27754 * 25 24 23 43 43 H 1.08001 * 119.99708 * 179.83570 * 26 25 24 44 44 H 1.07994 * 120.00504 * 180.02562 * 27 26 25 45 45 H 1.07992 * 119.99860 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7550 1.8337 2.3565 6 8 1.7014 2.3428 2.6845 7 7 3.8061 1.7065 3.1746 8 6 3.8253 2.1624 4.5667 9 6 4.3142 3.6111 4.6222 10 6 4.3345 4.0799 6.0543 11 1 4.0297 3.4113 6.8457 12 6 4.7423 5.3624 6.3541 13 7 5.1140 6.1765 5.3904 14 14 4.7669 5.9437 8.1292 15 1 6.0930 5.6481 8.7286 16 1 4.5185 7.4071 8.1743 17 1 3.7088 5.2381 8.8959 18 6 4.8469 1.1124 2.5580 19 8 5.9343 0.8638 3.0328 20 6 4.3752 0.8204 1.1474 21 1 4.3894 -0.2519 0.9525 22 6 5.2361 1.5634 0.1238 23 6 6.6012 0.9282 0.0602 24 6 7.6456 1.4594 0.7937 25 6 8.8968 0.8741 0.7387 26 6 9.1058 -0.2368 -0.0569 27 6 8.0627 -0.7649 -0.7945 28 6 6.8105 -0.1822 -0.7361 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 2.8197 2.1020 4.9828 35 1 4.4971 1.5298 5.1470 36 1 5.3198 3.6715 4.2062 37 1 3.6424 4.2437 4.0420 38 1 5.4012 7.0786 5.6014 39 1 4.7637 1.5081 -0.8569 40 1 5.3347 2.6074 0.4213 41 1 7.4832 2.3294 1.4127 42 1 9.7117 1.2865 1.3153 43 1 10.0839 -0.6925 -0.1018 44 1 8.2259 -1.6330 -1.4158 45 1 5.9955 -0.5948 -1.3123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349032136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:35 Heat of formation + Delta-G solvation = -17.194820 kcal Electronic energy + Delta-G solvation = -28041.024353 eV Core-core repulsion = 24217.018437 eV Total energy + Delta-G solvation = -3824.005916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.49084 -40.19571 -39.58665 -37.84613 -37.00152 -35.61952 -34.87794 -33.60643 -31.95199 -31.69779 -29.81947 -28.17876 -26.53541 -25.79539 -23.68255 -23.39799 -23.20016 -22.04317 -21.12802 -20.69137 -18.90537 -18.34487 -18.04683 -17.66797 -17.41026 -16.71195 -16.56394 -16.33987 -16.12539 -15.79796 -15.62997 -15.18399 -15.14687 -14.91170 -14.82721 -14.35716 -14.19130 -14.10102 -13.83036 -13.60895 -13.37061 -13.16840 -12.90805 -12.75060 -12.67688 -12.26080 -12.15394 -12.12837 -12.03615 -11.83398 -11.77744 -11.45367 -11.16302 -10.69533 -10.64664 -10.37530 -10.08311 -9.72303 -9.53531 -8.28085 -6.41489 0.40976 0.58588 0.65461 0.91322 1.37452 1.40449 1.48062 1.52474 1.97986 2.09705 2.37561 2.85770 2.99982 3.06076 3.55572 3.75352 3.92614 3.96399 4.00990 4.14284 4.17377 4.22266 4.35088 4.36353 4.38979 4.45342 4.48301 4.66388 4.67334 4.72571 4.83544 4.86306 4.92717 5.04405 5.18065 5.23413 5.31124 5.35626 5.41556 5.62941 5.68217 5.70240 5.71052 5.75118 5.86683 6.04641 6.14822 6.19623 6.38535 6.71940 7.02748 7.28456 8.84802 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.004213 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.058533 B = 6644.130927 C = 9163.955911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.186 4.186 3 C 0.169 3.831 4 N -0.606 5.606 5 C 0.692 3.308 6 O -0.579 6.579 7 N -0.582 5.582 8 C 0.135 3.865 9 C 0.028 3.972 10 C -0.547 4.547 11 H 0.070 0.930 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.974 3.026 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.259 1.259 18 C 0.510 3.490 19 O -0.486 6.486 20 C 0.115 3.885 21 H 0.160 0.840 22 C -0.069 4.069 23 C -0.097 4.097 24 C -0.114 4.114 25 C -0.138 4.138 26 C -0.124 4.124 27 C -0.125 4.125 28 C -0.106 4.106 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.088 0.912 36 H -0.011 1.011 37 H -0.013 1.013 38 H 0.266 0.734 39 H 0.137 0.863 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.140 0.860 44 H 0.152 0.848 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.101 -17.554 -19.358 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.205 4.205 3 C 0.050 3.950 4 N -0.344 5.344 5 C 0.395 3.605 6 O -0.456 6.456 7 N -0.326 5.326 8 C 0.015 3.985 9 C -0.009 4.009 10 C -0.585 4.585 11 H 0.088 0.912 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.797 3.203 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.183 1.183 18 C 0.298 3.702 19 O -0.356 6.356 20 C 0.009 3.991 21 H 0.177 0.823 22 C -0.107 4.107 23 C -0.097 4.097 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.142 4.142 27 C -0.143 4.143 28 C -0.124 4.124 29 H 0.112 0.888 30 H 0.132 0.868 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.152 0.848 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.007 0.993 37 H 0.005 0.995 38 H 0.074 0.926 39 H 0.155 0.845 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.136 0.864 43 H 0.158 0.842 44 H 0.170 0.830 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.092 -17.224 -18.993 25.640 hybrid contribution 0.205 1.165 1.493 1.905 sum 0.297 -16.059 -17.500 23.754 Atomic orbital electron populations 1.24099 0.96133 1.02730 0.97787 1.23333 0.96416 0.98744 1.02034 1.20772 0.90854 0.96678 0.86656 1.47863 1.13947 1.61819 1.10750 1.16170 0.83050 0.79033 0.82281 1.90916 1.26854 1.49405 1.78380 1.46762 1.15281 1.55698 1.14888 1.21682 1.02672 0.96831 0.77344 1.19133 0.94129 0.90755 0.96932 1.21460 1.45271 0.98838 0.92909 0.91197 1.26036 0.94206 0.96692 1.02675 1.70120 1.44987 1.07497 1.34532 0.85317 0.79097 0.77423 0.78445 1.19474 1.20551 1.18344 1.21534 0.83366 0.75855 0.89403 1.90775 1.20900 1.51456 1.72498 1.22230 0.81699 1.03451 0.91718 0.82301 1.20709 0.91771 0.98114 1.00098 1.19638 0.93915 0.97552 0.98628 1.21055 0.94265 0.99805 0.98085 1.21278 0.96912 0.97498 0.99924 1.21450 1.00570 0.95676 0.96488 1.21502 0.92700 1.00576 0.99481 1.21347 0.98544 0.94342 0.98147 0.88843 0.86767 0.85302 0.90184 0.84811 0.89908 0.89363 0.99269 0.99460 0.92570 0.84523 0.92366 0.89482 0.86402 0.84247 0.83034 0.82332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 14.32 67.78 0.97 -1.61 16 2 C -0.19 -2.75 9.85 25.65 0.25 -2.49 16 3 C 0.17 2.87 6.47 85.63 0.55 3.43 16 4 N -0.61 -15.21 2.72 -822.13 -2.24 -17.45 16 5 C 0.69 25.93 8.31 179.44 1.49 27.42 16 6 O -0.58 -26.07 17.12 -3.81 -0.07 -26.14 16 7 N -0.58 -23.28 2.60 -773.14 -2.01 -25.29 16 8 C 0.14 6.28 5.63 86.38 0.49 6.76 16 9 C 0.03 1.62 5.30 29.85 0.16 1.78 16 10 C -0.55 -32.48 9.11 25.60 0.23 -32.24 16 11 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 12 C 0.00 0.13 5.46 84.65 0.46 0.60 16 13 N -0.93 -58.82 13.29 21.45 0.28 -58.54 16 14 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 18 C 0.51 17.82 7.47 87.94 0.66 18.48 16 19 O -0.49 -19.51 15.91 -2.88 -0.05 -19.55 16 20 C 0.12 2.63 3.42 44.37 0.15 2.78 16 21 H 0.16 2.49 8.14 -2.39 -0.02 2.47 16 22 C -0.07 -1.36 5.06 29.85 0.15 -1.21 16 23 C -0.10 -2.10 4.73 -19.86 -0.09 -2.19 16 24 C -0.11 -3.21 8.12 22.27 0.18 -3.03 16 25 C -0.14 -3.44 10.05 22.27 0.22 -3.22 16 26 C -0.12 -2.35 10.05 22.27 0.22 -2.13 16 27 C -0.12 -1.91 10.05 22.27 0.22 -1.68 16 28 C -0.11 -1.62 9.73 22.27 0.22 -1.41 16 29 H 0.09 1.54 7.84 -2.91 -0.02 1.52 16 30 H 0.11 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.08 1.65 7.63 -2.39 -0.02 1.63 16 33 H 0.13 1.16 7.21 -2.38 -0.02 1.14 16 34 H 0.08 3.81 7.87 -2.39 -0.02 3.79 16 35 H 0.09 3.92 8.00 -2.38 -0.02 3.91 16 36 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 38 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.14 1.48 7.21 -2.39 -0.02 1.46 16 40 H 0.06 1.50 8.02 -2.39 -0.02 1.48 16 41 H 0.09 2.97 8.03 -2.91 -0.02 2.95 16 42 H 0.12 2.82 8.06 -2.91 -0.02 2.79 16 43 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 45 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -81.58 386.25 5.46 -76.11 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.97 Total: 13.27 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.54 Total: 10.03 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -3.97 Total: -101.28 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -0.11 Total: -45.69 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -81.58 5.46 -76.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349032136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.918 kcal (2) G-P(sol) polarization free energy of solvation -81.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds