Wall clock time and date at job start Tue Mar 31 2020 16:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00230 * 2 1 4 4 N 1.46498 * 109.47121 * 125.00122 * 3 2 1 5 5 C 1.34534 * 126.68938 * 85.11054 * 4 3 2 6 6 O 1.21538 * 123.76988 * 0.03492 * 5 4 3 7 7 N 1.33787 * 112.45506 * 180.02562 * 5 4 3 8 8 C 1.46498 * 124.17628 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47116 * 90.02791 * 8 7 5 10 10 C 1.50709 * 109.47228 * 180.02562 * 9 8 7 11 11 H 1.07993 * 119.99675 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00045 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99746 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00000 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46838 * 90.00139 * 14 12 10 16 16 H 1.48494 * 109.47317 * 210.00192 * 14 12 10 17 17 H 1.48498 * 109.46955 * 330.00615 * 14 12 10 18 18 C 1.34766 * 111.64778 * 0.23150 * 7 5 4 19 19 O 1.21238 * 127.15938 * 179.72864 * 18 7 5 20 20 C 1.47311 * 126.69207 * 265.15094 * 4 3 2 21 21 H 1.08995 * 110.59853 * 61.43956 * 20 4 3 22 22 C 1.53003 * 110.59883 * 298.64374 * 20 4 3 23 23 C 1.50697 * 109.46979 * 174.07925 * 22 20 4 24 24 C 1.38230 * 120.00298 * 275.91051 * 23 22 20 25 25 C 1.38241 * 119.99917 * 179.80947 * 24 23 22 26 26 C 1.38236 * 119.99996 * 0.42483 * 25 24 23 27 27 C 1.38237 * 119.99766 * 359.80537 * 26 25 24 28 28 C 1.38236 * 119.99516 * 96.18834 * 23 22 20 29 29 H 1.07994 * 119.99903 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00196 * 179.97438 * 1 2 3 31 31 H 1.08007 * 120.00019 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47196 * 5.00175 * 3 2 1 33 33 H 1.09002 * 109.47151 * 245.00535 * 3 2 1 34 34 H 1.09011 * 109.47290 * 330.02576 * 8 7 5 35 35 H 1.09002 * 109.47321 * 210.03030 * 8 7 5 36 36 H 1.08998 * 109.47390 * 60.00057 * 9 8 7 37 37 H 1.08998 * 109.47463 * 299.99858 * 9 8 7 38 38 H 0.96999 * 119.99925 * 179.97438 * 13 12 10 39 39 H 1.09001 * 109.47332 * 294.08441 * 22 20 4 40 40 H 1.09001 * 109.46576 * 54.08464 * 22 20 4 41 41 H 1.08001 * 120.00371 * 359.97438 * 24 23 22 42 42 H 1.08000 * 120.00136 * 180.20983 * 25 24 23 43 43 H 1.07995 * 119.99713 * 179.79221 * 26 25 24 44 44 H 1.08003 * 119.99568 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00261 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.2386 0.8223 1.1607 6 8 4.7604 0.2590 0.2186 7 7 4.8379 1.0053 2.3428 8 6 6.1954 0.5523 2.6561 9 6 7.1953 1.6552 2.3032 10 6 8.5919 1.1890 2.6249 11 1 8.7503 0.2046 3.0399 12 6 9.6672 2.0191 2.3894 13 7 9.4743 3.2176 1.8835 14 14 11.3982 1.4414 2.7888 15 1 11.9796 0.7628 1.6026 16 1 12.2388 2.6104 3.1517 17 1 11.3522 0.4915 3.9293 18 6 4.0366 1.6530 3.2115 19 8 4.2932 1.9588 4.3562 20 6 2.7483 1.9210 2.4590 21 1 1.9107 1.4253 2.9497 22 6 2.4881 3.4241 2.3411 23 6 2.0980 3.9737 3.6890 24 6 0.7848 3.8959 4.1134 25 6 0.4278 4.3964 5.3516 26 6 1.3823 4.9827 6.1615 27 6 2.6947 5.0647 5.7350 28 6 3.0524 4.5607 4.4985 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 6.4225 -0.3429 2.0769 35 1 6.2661 0.3245 3.7197 36 1 6.9683 2.5503 2.8823 37 1 7.1247 1.8830 1.2396 38 1 10.2308 3.8018 1.7181 39 1 3.3925 3.9233 1.9930 40 1 1.6805 3.5983 1.6301 41 1 0.0382 3.4416 3.4789 42 1 -0.5976 4.3326 5.6846 43 1 1.1027 5.3767 7.1273 44 1 3.4404 5.5232 6.3677 45 1 4.0777 4.6252 4.1652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349032240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:43 Heat of formation + Delta-G solvation = 2.327619 kcal Electronic energy + Delta-G solvation = -28054.827196 eV Core-core repulsion = 24231.667836 eV Total energy + Delta-G solvation = -3823.159360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14847 -39.27985 -38.22796 -36.64901 -35.47942 -34.39424 -33.26007 -32.43542 -30.88077 -30.19149 -28.83830 -26.82409 -24.98246 -24.48154 -22.62691 -22.02441 -21.74012 -21.03475 -20.28849 -19.42948 -17.23906 -17.05738 -16.64643 -16.43994 -16.02087 -15.70397 -15.19517 -15.16006 -14.81769 -14.61582 -14.42985 -13.96017 -13.86792 -13.65261 -13.36607 -13.30088 -12.94557 -12.89187 -12.55908 -12.34982 -12.14396 -12.10705 -11.54183 -11.52397 -11.15326 -10.99027 -10.96011 -10.83426 -10.42110 -10.13847 -10.06780 -9.86982 -9.64246 -9.24713 -9.16276 -8.89891 -8.79735 -8.65076 -8.38832 -6.03862 -4.07419 1.28250 1.43261 1.79676 1.97372 2.56977 3.20707 3.32605 3.38380 3.40378 3.42333 3.75441 4.16484 4.44753 4.54204 4.65056 4.71225 4.76930 4.84613 4.97000 5.00243 5.11135 5.14471 5.26765 5.32979 5.41989 5.48011 5.59371 5.64171 5.70506 5.73153 5.98782 6.05776 6.07059 6.10206 6.31606 6.33787 6.42470 6.46966 6.53330 6.58418 6.61284 6.67129 6.99981 7.42807 7.57841 7.72670 7.75028 7.93175 8.27958 8.44769 8.97568 9.56617 11.07844 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.004092 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.814270 B = 6840.675301 C = 9165.039009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.178 3.822 4 N -0.626 5.626 5 C 0.700 3.300 6 O -0.536 6.536 7 N -0.568 5.568 8 C 0.120 3.880 9 C 0.014 3.986 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.061 3.939 13 N -0.892 5.892 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.521 3.479 19 O -0.458 6.458 20 C 0.099 3.901 21 H 0.118 0.882 22 C -0.075 4.075 23 C -0.088 4.088 24 C -0.114 4.114 25 C -0.127 4.127 26 C -0.120 4.120 27 C -0.116 4.116 28 C -0.083 4.083 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.021 0.979 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.129 1.199 1.555 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.189 4.189 3 C 0.057 3.943 4 N -0.365 5.365 5 C 0.403 3.597 6 O -0.409 6.409 7 N -0.313 5.313 8 C 0.001 3.999 9 C -0.024 4.024 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.531 5.531 14 Si 0.724 3.276 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.197 1.197 18 C 0.307 3.693 19 O -0.327 6.327 20 C -0.008 4.008 21 H 0.136 0.864 22 C -0.113 4.113 23 C -0.088 4.088 24 C -0.132 4.132 25 C -0.145 4.145 26 C -0.138 4.138 27 C -0.134 4.134 28 C -0.101 4.101 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.566 1.177 1.526 22.648 hybrid contribution 1.001 -0.312 0.203 1.068 sum -21.565 0.865 1.729 21.651 Atomic orbital electron populations 1.23858 0.95564 1.02071 1.00287 1.23422 0.96171 0.99450 0.99879 1.20357 0.90633 0.95439 0.87829 1.47703 1.14722 1.60676 1.13446 1.15954 0.81088 0.79527 0.83180 1.90963 1.67601 1.45737 1.36607 1.46754 1.18022 1.53492 1.13003 1.22193 0.75881 1.00547 1.01293 1.19391 0.92472 0.92862 0.97657 1.21000 0.90749 1.01344 1.42933 0.92269 1.24982 0.99375 0.94824 0.94957 1.69968 1.31181 1.07951 1.43967 0.86517 0.84038 0.78255 0.78758 1.20542 1.21165 1.19727 1.20636 0.85585 0.77017 0.86043 1.90795 1.77563 1.49307 1.15026 1.22093 0.98595 0.96079 0.84064 0.86408 1.20679 1.03669 0.91687 0.95298 1.19559 0.93841 0.99746 0.95687 1.20943 0.95351 1.00335 0.96578 1.21045 0.99274 0.99523 0.94635 1.21142 0.93462 0.99670 0.99561 1.21158 0.96246 0.99793 0.96238 1.21129 0.99164 0.95814 0.93957 0.88359 0.88246 0.86887 0.89210 0.88520 0.89818 0.89947 0.96107 0.95833 0.92875 0.89568 0.89112 0.86289 0.86343 0.86377 0.86028 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 14.32 29.02 0.42 -0.86 16 2 C -0.17 -1.58 9.85 -36.03 -0.35 -1.93 16 3 C 0.18 1.75 6.42 -5.20 -0.03 1.72 16 4 N -0.63 -8.32 2.72 -173.77 -0.47 -8.79 16 5 C 0.70 12.73 8.31 -88.02 -0.73 12.00 16 6 O -0.54 -11.50 17.21 5.33 0.09 -11.41 16 7 N -0.57 -10.87 2.60 -120.73 -0.31 -11.18 16 8 C 0.12 2.62 5.64 -4.05 -0.02 2.59 16 9 C 0.01 0.37 5.30 -27.88 -0.15 0.22 16 10 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 14 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.52 8.92 7.48 -10.56 -0.08 8.84 16 19 O -0.46 -8.82 15.94 5.59 0.09 -8.73 16 20 C 0.10 1.24 3.41 -68.20 -0.23 1.01 16 21 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 22 C -0.07 -0.82 5.06 -27.88 -0.14 -0.96 16 23 C -0.09 -1.02 4.74 -104.63 -0.50 -1.52 16 24 C -0.11 -1.12 9.73 -39.58 -0.38 -1.51 16 25 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 26 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 27 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 28 C -0.08 -1.11 8.13 -39.58 -0.32 -1.43 16 29 H 0.10 0.54 7.84 -52.49 -0.41 0.13 16 30 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.09 0.60 6.88 -51.93 -0.36 0.24 16 33 H 0.10 1.02 8.12 -51.93 -0.42 0.60 16 34 H 0.08 1.82 7.86 -51.92 -0.41 1.41 16 35 H 0.08 1.74 8.00 -51.93 -0.42 1.33 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 39 H 0.09 1.08 8.02 -51.93 -0.42 0.67 16 40 H 0.09 0.72 7.22 -51.93 -0.37 0.35 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 44 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.12 1.84 8.04 -52.49 -0.42 1.42 16 LS Contribution 386.51 15.07 5.82 5.82 Total: -1.00 -34.26 386.51 -9.77 -44.04 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.57 Total: 0.20 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -4.13 Total: -0.45 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.05 Total: -46.29 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.18 Total: -20.13 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.26 -9.77 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349032240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.363 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds