Wall clock time and date at job start Tue Mar 31 2020 16:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00230 * 2 1 4 4 N 1.46498 * 109.47121 * 125.00122 * 3 2 1 5 5 C 1.34534 * 126.68938 * 85.11054 * 4 3 2 6 6 O 1.21538 * 123.76988 * 0.03492 * 5 4 3 7 7 N 1.33787 * 112.45506 * 180.02562 * 5 4 3 8 8 C 1.46498 * 124.17628 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47116 * 90.02791 * 8 7 5 10 10 C 1.50709 * 109.47228 * 180.02562 * 9 8 7 11 11 H 1.07993 * 119.99675 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00045 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99746 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00000 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46838 * 90.00139 * 14 12 10 16 16 H 1.48494 * 109.47317 * 210.00192 * 14 12 10 17 17 H 1.48498 * 109.46955 * 330.00615 * 14 12 10 18 18 C 1.34766 * 111.64778 * 0.23150 * 7 5 4 19 19 O 1.21238 * 127.15938 * 179.72864 * 18 7 5 20 20 C 1.47311 * 126.69207 * 265.15094 * 4 3 2 21 21 H 1.08995 * 110.59853 * 61.43956 * 20 4 3 22 22 C 1.53003 * 110.59883 * 298.64374 * 20 4 3 23 23 C 1.50697 * 109.46979 * 174.07925 * 22 20 4 24 24 C 1.38230 * 120.00298 * 275.91051 * 23 22 20 25 25 C 1.38241 * 119.99917 * 179.80947 * 24 23 22 26 26 C 1.38236 * 119.99996 * 0.42483 * 25 24 23 27 27 C 1.38237 * 119.99766 * 359.80537 * 26 25 24 28 28 C 1.38236 * 119.99516 * 96.18834 * 23 22 20 29 29 H 1.07994 * 119.99903 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00196 * 179.97438 * 1 2 3 31 31 H 1.08007 * 120.00019 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47196 * 5.00175 * 3 2 1 33 33 H 1.09002 * 109.47151 * 245.00535 * 3 2 1 34 34 H 1.09011 * 109.47290 * 330.02576 * 8 7 5 35 35 H 1.09002 * 109.47321 * 210.03030 * 8 7 5 36 36 H 1.08998 * 109.47390 * 60.00057 * 9 8 7 37 37 H 1.08998 * 109.47463 * 299.99858 * 9 8 7 38 38 H 0.96999 * 119.99925 * 179.97438 * 13 12 10 39 39 H 1.09001 * 109.47332 * 294.08441 * 22 20 4 40 40 H 1.09001 * 109.46576 * 54.08464 * 22 20 4 41 41 H 1.08001 * 120.00371 * 359.97438 * 24 23 22 42 42 H 1.08000 * 120.00136 * 180.20983 * 25 24 23 43 43 H 1.07995 * 119.99713 * 179.79221 * 26 25 24 44 44 H 1.08003 * 119.99568 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00261 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.2386 0.8223 1.1607 6 8 4.7604 0.2590 0.2186 7 7 4.8379 1.0053 2.3428 8 6 6.1954 0.5523 2.6561 9 6 7.1953 1.6552 2.3032 10 6 8.5919 1.1890 2.6249 11 1 8.7503 0.2046 3.0399 12 6 9.6672 2.0191 2.3894 13 7 9.4743 3.2176 1.8835 14 14 11.3982 1.4414 2.7888 15 1 11.9796 0.7628 1.6026 16 1 12.2388 2.6104 3.1517 17 1 11.3522 0.4915 3.9293 18 6 4.0366 1.6530 3.2115 19 8 4.2932 1.9588 4.3562 20 6 2.7483 1.9210 2.4590 21 1 1.9107 1.4253 2.9497 22 6 2.4881 3.4241 2.3411 23 6 2.0980 3.9737 3.6890 24 6 0.7848 3.8959 4.1134 25 6 0.4278 4.3964 5.3516 26 6 1.3823 4.9827 6.1615 27 6 2.6947 5.0647 5.7350 28 6 3.0524 4.5607 4.4985 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 6.4225 -0.3429 2.0769 35 1 6.2661 0.3245 3.7197 36 1 6.9683 2.5503 2.8823 37 1 7.1247 1.8830 1.2396 38 1 10.2308 3.8018 1.7181 39 1 3.3925 3.9233 1.9930 40 1 1.6805 3.5983 1.6301 41 1 0.0382 3.4416 3.4789 42 1 -0.5976 4.3326 5.6846 43 1 1.1027 5.3767 7.1273 44 1 3.4404 5.5232 6.3677 45 1 4.0777 4.6252 4.1652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349032240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:42 Heat of formation + Delta-G solvation = -17.130574 kcal Electronic energy + Delta-G solvation = -28055.670966 eV Core-core repulsion = 24231.667836 eV Total energy + Delta-G solvation = -3824.003130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.49746 -40.19700 -39.59385 -37.85587 -37.00750 -35.62760 -34.87672 -33.62501 -31.95524 -31.69759 -29.85322 -28.13618 -26.51401 -25.79541 -23.71117 -23.39836 -23.13611 -22.06260 -21.35170 -20.48966 -18.92540 -18.35001 -17.98108 -17.66601 -17.44010 -16.80669 -16.57061 -16.30671 -16.13968 -15.92376 -15.56034 -15.22826 -15.06878 -14.93557 -14.71922 -14.32360 -14.18907 -14.16742 -13.80835 -13.58118 -13.37195 -13.06729 -12.95823 -12.90470 -12.75210 -12.23412 -12.14108 -12.11123 -11.99738 -11.84406 -11.77577 -11.43932 -11.16307 -10.70454 -10.64949 -10.37260 -10.09964 -9.72262 -9.53916 -8.28267 -6.41699 0.40702 0.58570 0.64705 0.92057 1.37352 1.40383 1.48853 1.52483 1.96714 2.06829 2.37372 2.85452 2.99488 3.05869 3.56198 3.75354 3.90862 3.99163 4.03375 4.09104 4.17043 4.22770 4.33749 4.37686 4.39798 4.47331 4.47506 4.66550 4.67236 4.73671 4.78408 4.86380 4.89437 5.12252 5.17947 5.23435 5.30766 5.34745 5.43528 5.62964 5.67985 5.70290 5.73302 5.75095 5.83613 6.04359 6.14880 6.19662 6.37690 6.71660 7.01881 7.28211 8.84658 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.004092 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.814270 B = 6840.675301 C = 9165.039009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.201 4.201 3 C 0.173 3.827 4 N -0.607 5.607 5 C 0.691 3.309 6 O -0.580 6.580 7 N -0.582 5.582 8 C 0.135 3.865 9 C 0.029 3.971 10 C -0.547 4.547 11 H 0.070 0.930 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.974 3.026 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.259 1.259 18 C 0.510 3.490 19 O -0.486 6.486 20 C 0.116 3.884 21 H 0.157 0.843 22 C -0.068 4.068 23 C -0.097 4.097 24 C -0.106 4.106 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.138 4.138 28 C -0.114 4.114 29 H 0.128 0.872 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.088 0.912 36 H -0.011 1.011 37 H -0.013 1.013 38 H 0.266 0.734 39 H 0.058 0.942 40 H 0.137 0.863 41 H 0.159 0.841 42 H 0.152 0.848 43 H 0.140 0.860 44 H 0.118 0.882 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.837 0.833 1.911 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.220 4.220 3 C 0.054 3.946 4 N -0.344 5.344 5 C 0.394 3.606 6 O -0.456 6.456 7 N -0.326 5.326 8 C 0.014 3.986 9 C -0.009 4.009 10 C -0.585 4.585 11 H 0.088 0.912 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.797 3.203 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.183 1.183 18 C 0.298 3.702 19 O -0.356 6.356 20 C 0.010 3.990 21 H 0.174 0.826 22 C -0.106 4.106 23 C -0.098 4.098 24 C -0.123 4.123 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.156 4.156 28 C -0.132 4.132 29 H 0.146 0.854 30 H 0.125 0.875 31 H 0.103 0.897 32 H 0.154 0.846 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.008 0.992 37 H 0.005 0.995 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.155 0.845 41 H 0.177 0.823 42 H 0.170 0.830 43 H 0.158 0.842 44 H 0.136 0.864 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -26.346 0.823 1.880 26.426 hybrid contribution 2.030 -0.145 0.103 2.038 sum -24.316 0.678 1.982 24.406 Atomic orbital electron populations 1.24127 0.94431 1.03844 0.95837 1.23154 0.96981 0.97960 1.03945 1.20754 0.90396 0.97619 0.85829 1.47901 1.13098 1.58767 1.14657 1.16188 0.82548 0.79664 0.82213 1.90919 1.69007 1.47941 1.37770 1.46760 1.17312 1.54214 1.14355 1.21688 0.76910 0.98550 1.01408 1.19129 0.93921 0.93245 0.94624 1.21461 0.91793 1.02014 1.43240 0.91207 1.26037 1.04406 0.94760 0.94409 1.70115 1.32806 1.09347 1.44849 0.85316 0.77796 0.78082 0.79078 1.19583 1.20484 1.18285 1.21532 0.87004 0.75836 0.85780 1.90775 1.78540 1.49982 1.16333 1.22212 0.96399 0.97639 0.82772 0.82616 1.20710 1.04113 0.89583 0.96200 1.19635 0.94567 0.99984 0.95586 1.21347 0.94773 0.99213 0.97017 1.21506 1.00539 0.97956 0.94247 1.21452 0.92637 0.99370 1.00717 1.21279 0.97627 1.00680 0.96035 1.21055 0.98258 0.98413 0.95511 0.85427 0.87460 0.89684 0.84582 0.89942 0.89902 0.89391 0.99232 0.99459 0.92556 0.92313 0.84469 0.82300 0.83004 0.84238 0.86394 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 14.32 67.78 0.97 -0.42 16 2 C -0.20 -3.26 9.85 25.65 0.25 -3.01 16 3 C 0.17 2.97 6.42 85.63 0.55 3.52 16 4 N -0.61 -15.51 2.72 -822.12 -2.24 -17.74 16 5 C 0.69 26.16 8.31 179.44 1.49 27.65 16 6 O -0.58 -26.32 17.21 -3.84 -0.07 -26.39 16 7 N -0.58 -23.50 2.60 -773.12 -2.01 -25.51 16 8 C 0.14 6.30 5.64 86.38 0.49 6.78 16 9 C 0.03 1.65 5.30 29.85 0.16 1.80 16 10 C -0.55 -32.57 9.11 25.60 0.23 -32.34 16 11 H 0.07 3.91 7.74 -2.91 -0.02 3.88 16 12 C 0.00 0.13 5.46 84.66 0.46 0.60 16 13 N -0.93 -58.87 13.29 21.45 0.28 -58.59 16 14 Si 0.97 45.61 29.54 68.60 2.03 47.63 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 C 0.51 18.02 7.48 87.94 0.66 18.68 16 19 O -0.49 -19.65 15.94 -2.90 -0.05 -19.70 16 20 C 0.12 2.70 3.41 44.37 0.15 2.85 16 21 H 0.16 2.61 8.14 -2.39 -0.02 2.59 16 22 C -0.07 -1.35 5.06 29.85 0.15 -1.20 16 23 C -0.10 -2.10 4.74 -19.87 -0.09 -2.20 16 24 C -0.11 -1.61 9.73 22.27 0.22 -1.39 16 25 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 26 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 27 C -0.14 -3.44 10.05 22.27 0.22 -3.22 16 28 C -0.11 -3.22 8.13 22.27 0.18 -3.04 16 29 H 0.13 0.53 7.84 -2.91 -0.02 0.50 16 30 H 0.11 0.91 8.06 -2.91 -0.02 0.88 16 31 H 0.08 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.14 1.07 6.88 -2.39 -0.02 1.06 16 33 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16 34 H 0.08 3.83 7.86 -2.38 -0.02 3.81 16 35 H 0.09 3.94 8.00 -2.39 -0.02 3.92 16 36 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H -0.01 -0.83 8.14 -2.39 -0.02 -0.84 16 38 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 39 H 0.06 1.51 8.02 -2.39 -0.02 1.49 16 40 H 0.14 1.46 7.22 -2.39 -0.02 1.44 16 41 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 43 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 44 H 0.12 2.81 8.06 -2.91 -0.02 2.79 16 45 H 0.09 2.97 8.04 -2.91 -0.02 2.95 16 Total: -1.00 -82.24 386.51 5.46 -76.78 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.97 Total: 12.22 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 6.54 Total: 11.29 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -3.97 Total: -101.84 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -0.11 Total: -46.09 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -82.24 5.46 -76.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349032240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.652 kcal (2) G-P(sol) polarization free energy of solvation -82.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds