Wall clock time and date at job start Tue Mar 31 2020 15:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 H 1.08994 * 109.47007 * 302.57438 * 3 2 1 5 5 C 1.50700 * 109.46928 * 182.57048 * 3 2 1 6 6 H 1.08001 * 120.00393 * 245.27848 * 5 3 2 7 7 C 1.37882 * 119.99677 * 65.28434 * 5 3 2 8 8 N 1.31516 * 120.00097 * 7.24254 * 7 5 3 9 9 Si 1.86796 * 119.99769 * 187.24561 * 7 5 3 10 10 H 1.48502 * 109.47001 * 84.99090 * 9 7 5 11 11 H 1.48503 * 109.47160 * 204.98471 * 9 7 5 12 12 H 1.48497 * 109.47555 * 324.98675 * 9 7 5 13 13 N 1.46503 * 109.46832 * 62.57721 * 3 2 1 14 14 C 1.34781 * 119.99710 * 275.26881 * 13 3 2 15 15 O 1.21284 * 119.99750 * 359.72996 * 14 13 3 16 16 C 1.50693 * 119.99818 * 179.72827 * 14 13 3 17 17 H 1.09005 * 109.47511 * 60.00671 * 16 14 13 18 18 C 1.53002 * 109.47590 * 300.00214 * 16 14 13 19 19 O 1.42908 * 109.47045 * 180.02562 * 16 14 13 20 20 C 1.35912 * 116.99886 * 205.02241 * 19 16 14 21 21 C 1.39851 * 120.09446 * 354.58544 * 20 19 16 22 22 N 1.31018 * 121.66107 * 180.02562 * 21 20 19 23 23 C 1.33689 * 121.39969 * 359.97226 * 22 21 20 24 24 C 1.40603 * 120.99138 * 179.97438 * 23 22 21 25 25 C 1.36079 * 119.75846 * 180.02562 * 24 23 22 26 26 C 1.39359 * 121.07213 * 359.97438 * 25 24 23 27 27 C 1.36125 * 120.86582 * 0.02562 * 26 25 24 28 28 C 1.40469 * 119.62024 * 359.97438 * 27 26 25 29 29 C 1.37004 * 120.09002 * 174.31029 * 20 19 16 30 30 H 1.09001 * 109.47071 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46895 * 300.00065 * 1 2 3 32 32 H 1.09000 * 109.46489 * 60.00075 * 1 2 3 33 33 H 1.08992 * 109.47235 * 239.99560 * 2 1 3 34 34 H 1.09009 * 109.46580 * 119.99843 * 2 1 3 35 35 H 0.97000 * 119.99994 * 180.02562 * 8 7 5 36 36 H 0.96998 * 120.00258 * 95.00128 * 13 3 2 37 37 H 1.09005 * 109.46928 * 59.99634 * 18 16 14 38 38 H 1.08993 * 109.47486 * 180.02562 * 18 16 14 39 39 H 1.08996 * 109.46957 * 300.00598 * 18 16 14 40 40 H 1.08005 * 119.16615 * 359.97438 * 21 20 19 41 41 H 1.07998 * 120.12127 * 359.97438 * 24 23 22 42 42 H 1.08004 * 119.46021 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.56373 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.19305 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.93280 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6395 1.9694 -0.8660 5 6 3.5457 1.4429 -0.0637 6 1 4.1213 1.8215 0.7680 7 6 4.1884 0.9601 -1.1840 8 7 3.4930 0.6324 -2.2511 9 14 6.0468 0.7714 -1.1860 10 1 6.4121 -0.5372 -0.5867 11 1 6.5492 0.8339 -2.5820 12 1 6.6565 1.8675 -0.3909 13 7 1.6030 2.1149 1.2261 14 6 0.3801 2.6783 1.2864 15 8 -0.3566 2.6328 0.3240 16 6 -0.0718 3.3646 2.5496 17 1 0.6077 4.1851 2.7804 18 6 -0.0700 2.3607 3.7042 19 8 -1.3932 3.8770 2.3667 20 6 -1.7591 4.9312 3.1426 21 6 -0.9019 5.3943 4.1459 22 7 -1.2237 6.4074 4.9118 23 6 -2.3891 7.0466 4.7682 24 6 -2.7259 8.1325 5.5953 25 6 -3.9192 8.7647 5.4275 26 6 -4.8188 8.3542 4.4455 27 6 -4.5280 7.3070 3.6258 28 6 -3.3053 6.6309 3.7704 29 6 -2.9662 5.5467 2.9403 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 3.9451 0.2924 -3.0390 36 1 2.1923 2.1513 1.9957 37 1 0.9378 1.9694 3.8438 38 1 -0.3972 2.8570 4.6177 39 1 -0.7494 1.5403 3.4734 40 1 0.0490 4.9038 4.2936 41 1 -2.0404 8.4633 6.3615 42 1 -4.1729 9.5986 6.0653 43 1 -5.7590 8.8738 4.3334 44 1 -5.2334 6.9978 2.8687 45 1 -3.6400 5.2071 2.1676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350932653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:44 Heat of formation + Delta-G solvation = -23.630047 kcal Electronic energy + Delta-G solvation = -27221.675347 eV Core-core repulsion = 23397.390378 eV Total energy + Delta-G solvation = -3824.284969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.30347 -39.85158 -38.46082 -36.66721 -35.05434 -33.65153 -32.72610 -31.82815 -30.67738 -30.45688 -29.50618 -27.02691 -24.82678 -24.67660 -23.41788 -22.85091 -22.30199 -20.50533 -19.44757 -18.73771 -18.14239 -17.95912 -16.78045 -16.12967 -15.75540 -15.62972 -15.30115 -14.90174 -14.75776 -14.47438 -14.23524 -13.98467 -13.87033 -13.63349 -13.31031 -13.06598 -12.74707 -12.56061 -12.29543 -12.06157 -11.95629 -11.81519 -11.58359 -11.55106 -11.40176 -11.23084 -11.05742 -10.81783 -10.39345 -10.26259 -10.24210 -9.76443 -9.72955 -9.15872 -9.04649 -8.77778 -8.55179 -8.17661 -7.95338 -6.19087 -4.25961 0.14851 0.61824 1.78599 2.64708 2.77502 3.18766 3.22154 3.29314 3.30384 3.87796 3.95337 4.09253 4.28373 4.33160 4.42467 4.56122 4.71553 4.77370 4.89172 4.90782 4.94156 5.14253 5.15921 5.19594 5.34566 5.53434 5.56496 5.59411 5.74902 5.83017 5.98658 6.04030 6.16571 6.23597 6.30599 6.34681 6.54794 6.55143 6.93522 7.04736 7.14283 7.25299 7.32512 7.54703 7.59913 7.64956 7.77822 8.01493 8.53576 8.72015 8.99357 9.40276 10.88891 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024390 B = 0.002362 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.713119 B =11850.337437 C =12296.596743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.271 3.729 4 H 0.056 0.944 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.899 3.101 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.507 3.493 15 O -0.524 6.524 16 C 0.058 3.942 17 H 0.095 0.905 18 C -0.176 4.176 19 O -0.274 6.274 20 C 0.085 3.915 21 C 0.066 3.934 22 N -0.439 5.439 23 C 0.089 3.911 24 C -0.079 4.079 25 C -0.118 4.118 26 C -0.108 4.108 27 C -0.104 4.104 28 C -0.061 4.061 29 C -0.109 4.109 30 H 0.024 0.976 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.389 0.611 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.166 0.834 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.618 11.182 15.647 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.169 3.831 4 H 0.074 0.926 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.727 3.273 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.351 5.351 14 C 0.290 3.710 15 O -0.400 6.400 16 C -0.002 4.002 17 H 0.113 0.887 18 C -0.233 4.233 19 O -0.184 6.184 20 C 0.037 3.963 21 C -0.108 4.108 22 N -0.148 5.148 23 C -0.032 4.032 24 C -0.098 4.098 25 C -0.138 4.138 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.063 4.063 29 C -0.136 4.136 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.221 0.779 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.183 0.817 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.149 0.851 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.712 11.313 15.242 22.845 hybrid contribution 0.958 -0.460 -0.232 1.087 sum -11.754 10.853 15.010 21.938 Atomic orbital electron populations 1.21862 0.98057 0.98288 1.01462 1.21864 0.92860 0.99748 1.01486 1.18845 0.93849 0.88686 0.81675 0.92573 1.21155 0.90267 1.43472 1.02764 0.92008 1.24890 0.98675 0.95043 0.94897 1.69965 1.35867 1.42647 1.03141 0.86501 0.84852 0.78649 0.77335 1.20404 1.21139 1.19895 1.46413 1.14298 1.55602 1.18785 1.19697 0.83273 0.80214 0.87855 1.90725 1.53658 1.58661 1.36960 1.22491 0.83440 0.97555 0.96715 0.88743 1.22355 1.04463 0.99844 0.96670 1.86297 1.31235 1.43301 1.57614 1.19800 0.95129 0.89321 0.92078 1.23351 1.00072 0.94881 0.92477 1.67923 1.16677 1.06193 1.23967 1.18857 0.90705 0.97286 0.96399 1.20772 0.96922 0.93757 0.98305 1.20860 0.93961 1.00274 0.98677 1.20928 0.99657 0.96743 0.95280 1.20967 0.95401 0.96029 0.99906 1.18597 0.95788 0.95923 0.95949 1.20691 0.96188 0.95599 1.01127 0.95664 0.94222 0.92850 0.89905 0.94587 0.92470 0.77875 0.89715 0.91271 0.90500 0.81675 0.84814 0.85394 0.85516 0.85063 0.83379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.47 37.16 0.31 -2.68 16 2 C -0.12 -2.79 5.49 -26.73 -0.15 -2.94 16 3 C 0.27 6.52 2.14 -69.08 -0.15 6.37 16 4 H 0.06 1.60 7.55 -51.93 -0.39 1.21 16 5 C -0.54 -13.68 8.67 -34.44 -0.30 -13.98 16 6 H 0.06 1.49 7.73 -52.49 -0.41 1.08 16 7 C 0.07 1.81 5.22 -17.82 -0.09 1.72 16 8 N -0.88 -24.36 12.04 55.43 0.67 -23.69 16 9 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 13 N -0.70 -13.50 4.89 -54.93 -0.27 -13.77 16 14 C 0.51 9.59 5.68 -10.99 -0.06 9.52 16 15 O -0.52 -12.14 13.61 -14.36 -0.20 -12.34 16 16 C 0.06 0.81 2.64 -27.89 -0.07 0.74 16 17 H 0.09 1.11 6.30 -51.93 -0.33 0.78 16 18 C -0.18 -1.94 9.06 37.16 0.34 -1.60 16 19 O -0.27 -4.23 9.33 -39.37 -0.37 -4.60 16 20 C 0.09 1.15 6.57 -39.43 -0.26 0.89 16 21 C 0.07 0.82 9.40 -17.30 -0.16 0.66 16 22 N -0.44 -5.75 10.33 -10.85 -0.11 -5.86 16 23 C 0.09 1.10 6.60 -84.84 -0.56 0.54 16 24 C -0.08 -0.78 9.98 -39.47 -0.39 -1.17 16 25 C -0.12 -0.92 9.94 -39.94 -0.40 -1.32 16 26 C -0.11 -0.83 9.95 -39.92 -0.40 -1.23 16 27 C -0.10 -0.95 9.77 -39.50 -0.39 -1.34 16 28 C -0.06 -0.71 5.74 -106.81 -0.61 -1.32 16 29 C -0.11 -1.37 9.82 -39.10 -0.38 -1.75 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.82 5.69 -51.93 -0.30 0.52 16 32 H 0.05 1.24 7.69 -51.93 -0.40 0.84 16 33 H 0.08 2.13 6.74 -51.93 -0.35 1.78 16 34 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.39 6.26 7.94 -40.82 -0.32 5.93 16 37 H 0.08 0.81 7.56 -51.93 -0.39 0.41 16 38 H 0.07 0.64 6.92 -51.93 -0.36 0.28 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.17 1.66 5.38 -52.48 -0.28 1.38 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 43 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -31.73 368.75 -9.51 -41.24 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.05 Total: 7.23 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -3.72 Total: -8.89 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.29 Total: -43.33 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.56 Total: -16.94 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.73 -9.51 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350932653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.614 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds