Wall clock time and date at job start Tue Mar 31 2020 15:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 H 1.08994 * 109.47007 * 302.57438 * 3 2 1 5 5 C 1.50700 * 109.46928 * 182.57048 * 3 2 1 6 6 H 1.08001 * 120.00393 * 245.27848 * 5 3 2 7 7 C 1.37882 * 119.99677 * 65.28434 * 5 3 2 8 8 N 1.31516 * 120.00097 * 7.24254 * 7 5 3 9 9 Si 1.86796 * 119.99769 * 187.24561 * 7 5 3 10 10 H 1.48502 * 109.47001 * 84.99090 * 9 7 5 11 11 H 1.48503 * 109.47160 * 204.98471 * 9 7 5 12 12 H 1.48497 * 109.47555 * 324.98675 * 9 7 5 13 13 N 1.46503 * 109.46832 * 62.57721 * 3 2 1 14 14 C 1.34781 * 119.99710 * 275.26881 * 13 3 2 15 15 O 1.21284 * 119.99750 * 359.72996 * 14 13 3 16 16 C 1.50693 * 119.99818 * 179.72827 * 14 13 3 17 17 H 1.09005 * 109.47511 * 60.00671 * 16 14 13 18 18 C 1.53002 * 109.47590 * 300.00214 * 16 14 13 19 19 O 1.42908 * 109.47045 * 180.02562 * 16 14 13 20 20 C 1.35912 * 116.99886 * 205.02241 * 19 16 14 21 21 C 1.39851 * 120.09446 * 354.58544 * 20 19 16 22 22 N 1.31018 * 121.66107 * 180.02562 * 21 20 19 23 23 C 1.33689 * 121.39969 * 359.97226 * 22 21 20 24 24 C 1.40603 * 120.99138 * 179.97438 * 23 22 21 25 25 C 1.36079 * 119.75846 * 180.02562 * 24 23 22 26 26 C 1.39359 * 121.07213 * 359.97438 * 25 24 23 27 27 C 1.36125 * 120.86582 * 0.02562 * 26 25 24 28 28 C 1.40469 * 119.62024 * 359.97438 * 27 26 25 29 29 C 1.37004 * 120.09002 * 174.31029 * 20 19 16 30 30 H 1.09001 * 109.47071 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46895 * 300.00065 * 1 2 3 32 32 H 1.09000 * 109.46489 * 60.00075 * 1 2 3 33 33 H 1.08992 * 109.47235 * 239.99560 * 2 1 3 34 34 H 1.09009 * 109.46580 * 119.99843 * 2 1 3 35 35 H 0.97000 * 119.99994 * 180.02562 * 8 7 5 36 36 H 0.96998 * 120.00258 * 95.00128 * 13 3 2 37 37 H 1.09005 * 109.46928 * 59.99634 * 18 16 14 38 38 H 1.08993 * 109.47486 * 180.02562 * 18 16 14 39 39 H 1.08996 * 109.46957 * 300.00598 * 18 16 14 40 40 H 1.08005 * 119.16615 * 359.97438 * 21 20 19 41 41 H 1.07998 * 120.12127 * 359.97438 * 24 23 22 42 42 H 1.08004 * 119.46021 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.56373 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.19305 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.93280 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6395 1.9694 -0.8660 5 6 3.5457 1.4429 -0.0637 6 1 4.1213 1.8215 0.7680 7 6 4.1884 0.9601 -1.1840 8 7 3.4930 0.6324 -2.2511 9 14 6.0468 0.7714 -1.1860 10 1 6.4121 -0.5372 -0.5867 11 1 6.5492 0.8339 -2.5820 12 1 6.6565 1.8675 -0.3909 13 7 1.6030 2.1149 1.2261 14 6 0.3801 2.6783 1.2864 15 8 -0.3566 2.6328 0.3240 16 6 -0.0718 3.3646 2.5496 17 1 0.6077 4.1851 2.7804 18 6 -0.0700 2.3607 3.7042 19 8 -1.3932 3.8770 2.3667 20 6 -1.7591 4.9312 3.1426 21 6 -0.9019 5.3943 4.1459 22 7 -1.2237 6.4074 4.9118 23 6 -2.3891 7.0466 4.7682 24 6 -2.7259 8.1325 5.5953 25 6 -3.9192 8.7647 5.4275 26 6 -4.8188 8.3542 4.4455 27 6 -4.5280 7.3070 3.6258 28 6 -3.3053 6.6309 3.7704 29 6 -2.9662 5.5467 2.9403 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 3.9451 0.2924 -3.0390 36 1 2.1923 2.1513 1.9957 37 1 0.9378 1.9694 3.8438 38 1 -0.3972 2.8570 4.6177 39 1 -0.7494 1.5403 3.4734 40 1 0.0490 4.9038 4.2936 41 1 -2.0404 8.4633 6.3615 42 1 -4.1729 9.5986 6.0653 43 1 -5.7590 8.8738 4.3334 44 1 -5.2334 6.9978 2.8687 45 1 -3.6400 5.2071 2.1676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350932653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:43 Heat of formation + Delta-G solvation = -42.877865 kcal Electronic energy + Delta-G solvation = -27222.509995 eV Core-core repulsion = 23397.390378 eV Total energy + Delta-G solvation = -3825.119617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.21612 -41.09852 -39.71869 -37.53189 -36.83859 -34.68411 -34.28223 -33.36019 -32.09766 -31.25693 -30.35760 -28.89608 -25.94763 -25.56751 -24.94377 -24.05458 -23.12863 -22.06466 -21.15041 -19.67208 -19.37323 -18.94721 -18.14994 -17.27618 -17.18802 -16.89976 -16.67396 -16.13869 -16.05944 -15.63891 -15.20676 -15.12044 -14.83763 -14.67426 -14.57162 -14.38964 -14.01531 -13.98480 -13.47009 -13.31456 -13.26775 -13.02945 -12.91229 -12.69369 -12.63461 -12.60599 -12.39855 -12.27226 -12.16574 -12.07884 -11.62697 -11.10482 -11.08542 -10.72325 -10.57135 -10.49115 -9.70107 -9.58120 -9.02731 -8.18651 -6.32646 -0.64990 -0.20612 0.97403 1.45827 1.46516 1.55562 1.61484 1.71258 1.92140 2.40295 2.72320 3.06849 3.13580 3.23877 3.38623 3.63725 3.68841 3.78961 3.85089 3.92573 4.02954 4.21673 4.29749 4.44139 4.46791 4.52406 4.55883 4.65010 4.72289 4.75300 4.79064 4.99356 5.04319 5.08746 5.12581 5.23368 5.34047 5.40891 5.45356 5.50013 5.50772 5.60209 5.74689 5.85664 5.90135 6.06709 6.12894 6.72152 6.75871 6.91331 7.32905 7.51145 8.89815 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024390 B = 0.002362 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.713119 B =11850.337437 C =12296.596743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.077 0.923 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.263 1.263 13 N -0.694 5.694 14 C 0.503 3.497 15 O -0.573 6.573 16 C 0.067 3.933 17 H 0.121 0.879 18 C -0.169 4.169 19 O -0.300 6.300 20 C 0.064 3.936 21 C 0.062 3.938 22 N -0.455 5.455 23 C 0.067 3.933 24 C -0.099 4.099 25 C -0.104 4.104 26 C -0.100 4.100 27 C -0.116 4.116 28 C -0.077 4.077 29 C -0.116 4.116 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.023 0.977 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.264 0.736 36 H 0.407 0.593 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.186 0.814 41 H 0.144 0.856 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.149 0.851 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.772 12.601 18.556 25.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.095 0.905 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.793 3.207 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.187 1.187 13 N -0.345 5.345 14 C 0.288 3.712 15 O -0.453 6.453 16 C 0.008 3.992 17 H 0.138 0.862 18 C -0.226 4.226 19 O -0.212 6.212 20 C 0.017 3.983 21 C -0.112 4.112 22 N -0.163 5.163 23 C -0.054 4.054 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.135 4.135 28 C -0.079 4.079 29 C -0.143 4.143 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.243 0.757 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.202 0.798 41 H 0.162 0.838 42 H 0.180 0.820 43 H 0.179 0.821 44 H 0.166 0.834 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.857 12.749 18.212 25.680 hybrid contribution 0.834 -0.735 -1.113 1.573 sum -12.023 12.014 17.099 24.109 Atomic orbital electron populations 1.21701 0.96890 0.99357 1.00338 1.21706 0.93781 0.98949 1.00738 1.18407 0.93389 0.88887 0.81847 0.98123 1.21543 0.91000 1.42862 1.03095 0.90528 1.25780 1.03316 0.94798 0.94542 1.70125 1.37772 1.43855 1.03845 0.85420 0.79194 0.79071 0.77033 1.19517 1.21695 1.18719 1.46102 1.15062 1.55373 1.17948 1.20546 0.82328 0.79317 0.89005 1.90704 1.54926 1.60374 1.39302 1.22413 0.83767 0.98634 0.94386 0.86176 1.22363 1.05484 0.98744 0.96032 1.86241 1.31702 1.44360 1.58901 1.19917 0.95996 0.89514 0.92883 1.23563 1.00578 0.94926 0.92091 1.67947 1.17362 1.06608 1.24392 1.19300 0.90768 0.98153 0.97201 1.21020 0.98298 0.93687 0.98698 1.21315 0.92708 1.00116 0.98238 1.21385 1.00706 0.95710 0.93946 1.21262 0.94814 0.96471 1.00928 1.18819 0.96981 0.96122 0.95981 1.20928 0.96176 0.95836 1.01334 0.93328 0.93551 0.95758 0.92863 0.92867 0.92672 0.75674 0.87723 0.88975 0.91754 0.79758 0.83835 0.82018 0.82120 0.83369 0.83047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.47 71.98 0.61 -4.91 16 2 C -0.11 -5.32 5.49 30.60 0.17 -5.16 16 3 C 0.28 13.78 2.14 44.24 0.09 13.88 16 4 H 0.00 0.05 7.55 -2.39 -0.02 0.03 16 5 C -0.55 -27.90 8.67 25.60 0.22 -27.68 16 6 H 0.08 3.59 7.73 -2.91 -0.02 3.57 16 7 C 0.02 0.85 5.22 84.66 0.44 1.29 16 8 N -0.92 -52.59 12.04 21.45 0.26 -52.33 16 9 Si 0.97 41.27 29.54 68.60 2.03 43.29 16 10 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 13 N -0.69 -26.75 4.89 -446.10 -2.18 -28.93 16 14 C 0.50 19.31 5.68 87.65 0.50 19.81 16 15 O -0.57 -27.89 13.61 15.99 0.22 -27.67 16 16 C 0.07 1.85 2.64 29.85 0.08 1.93 16 17 H 0.12 2.64 6.30 -2.38 -0.02 2.63 16 18 C -0.17 -3.41 9.06 71.98 0.65 -2.76 16 19 O -0.30 -9.41 9.33 -73.53 -0.69 -10.10 16 20 C 0.06 1.75 6.57 22.37 0.15 1.89 16 21 C 0.06 1.49 9.40 85.20 0.80 2.29 16 22 N -0.45 -11.61 10.33 -188.23 -1.95 -13.55 16 23 C 0.07 1.60 6.60 40.29 0.27 1.87 16 24 C -0.10 -1.76 9.98 22.34 0.22 -1.53 16 25 C -0.10 -1.28 9.94 22.04 0.22 -1.06 16 26 C -0.10 -1.19 9.95 22.05 0.22 -0.97 16 27 C -0.12 -1.91 9.77 22.32 0.22 -1.69 16 28 C -0.08 -1.77 5.74 -21.28 -0.12 -1.89 16 29 C -0.12 -2.95 9.82 22.58 0.22 -2.72 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.95 5.69 -2.39 -0.01 1.93 16 32 H 0.02 1.17 7.69 -2.39 -0.02 1.15 16 33 H 0.05 2.83 6.74 -2.39 -0.02 2.82 16 34 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.41 12.52 7.94 -92.71 -0.74 11.79 16 37 H 0.10 1.68 7.56 -2.38 -0.02 1.67 16 38 H 0.09 1.48 6.92 -2.39 -0.02 1.46 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 40 H 0.19 3.40 5.38 -2.91 -0.02 3.38 16 41 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 42 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 44 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -73.09 368.75 2.93 -70.15 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.28 Total: 26.55 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 4.96 Total: -7.41 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -3.87 Total: -94.81 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.47 Total: -37.77 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -73.09 2.93 -70.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350932653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.277 kcal (2) G-P(sol) polarization free energy of solvation -73.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds